-
1
-
-
0036174975
-
rRNA Promoter Activity in the Fast-Growing Bacterium Vibrio natriegens
-
Aiyar, S.E., Gaal, T., Gourse, R.L., rRNA Promoter Activity in the Fast-Growing Bacterium Vibrio natriegens. J. Bacteriol. 184 (2002), 1349–1358.
-
(2002)
J. Bacteriol.
, vol.184
, pp. 1349-1358
-
-
Aiyar, S.E.1
Gaal, T.2
Gourse, R.L.3
-
2
-
-
84941282441
-
Parallel labeling experiments for pathway elucidation and 13C metabolic flux analysis
-
Antoniewicz, M.R., Parallel labeling experiments for pathway elucidation and 13C metabolic flux analysis. Curr. Opin. Biotechnol. 36 (2015), 91–97.
-
(2015)
Curr. Opin. Biotechnol.
, vol.36
, pp. 91-97
-
-
Antoniewicz, M.R.1
-
3
-
-
79954522565
-
Measuring deuterium enrichment of glucose hydrogen atoms by gas chromatography/mass spectrometry
-
Antoniewicz, M.R., Kelleher, J.K., Stephanopoulos, G., Measuring deuterium enrichment of glucose hydrogen atoms by gas chromatography/mass spectrometry. Anal. Chem. 83 (2011), 3211–3216.
-
(2011)
Anal. Chem.
, vol.83
, pp. 3211-3216
-
-
Antoniewicz, M.R.1
Kelleher, J.K.2
Stephanopoulos, G.3
-
4
-
-
35348941242
-
Accurate Assessment of Amino Acid Mass Isotopomer Distributions for Metabolic Flux Analysis
-
Antoniewicz, M.R., Kelleher, J.K., Stephanopoulos, G., Accurate Assessment of Amino Acid Mass Isotopomer Distributions for Metabolic Flux Analysis. Anal. Chem. 79 (2007), 7554–7559.
-
(2007)
Anal. Chem.
, vol.79
, pp. 7554-7559
-
-
Antoniewicz, M.R.1
Kelleher, J.K.2
Stephanopoulos, G.3
-
5
-
-
33845679072
-
Elementary metabolite units (EMU): a novel framework for modeling isotopic distributions
-
Antoniewicz, M.R., Kelleher, J.K., Stephanopoulos, G., Elementary metabolite units (EMU): a novel framework for modeling isotopic distributions. Metab. Eng. 9 (2007), 68–86.
-
(2007)
Metab. Eng.
, vol.9
, pp. 68-86
-
-
Antoniewicz, M.R.1
Kelleher, J.K.2
Stephanopoulos, G.3
-
6
-
-
33745155105
-
Determination of confidence intervals of metabolic fluxes estimated from stable isotope measurements
-
Antoniewicz, M.R., Kelleher, J.K., Stephanopoulos, G., Determination of confidence intervals of metabolic fluxes estimated from stable isotope measurements. Metab. Eng. 8 (2006), 324–337.
-
(2006)
Metab. Eng.
, vol.8
, pp. 324-337
-
-
Antoniewicz, M.R.1
Kelleher, J.K.2
Stephanopoulos, G.3
-
7
-
-
34249297627
-
Metabolic flux analysis in a nonstationary system: fed-batch fermentation of a high yielding strain of E. coli producing 1,3-propanediol
-
Antoniewicz, M.R., Kraynie, D.F., Laffend, L. a., González-Lergier, J., Kelleher, J.K., Stephanopoulos, G., Metabolic flux analysis in a nonstationary system: fed-batch fermentation of a high yielding strain of E. coli producing 1,3-propanediol. Metab. Eng. 9 (2007), 277–292.
-
(2007)
Metab. Eng.
, vol.9
, pp. 277-292
-
-
Antoniewicz, M.R.1
Kraynie, D.F.2
Laffend, L.A.3
González-Lergier, J.4
Kelleher, J.K.5
Stephanopoulos, G.6
-
8
-
-
34347258175
-
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox
-
Becker, S.A., Feist, A.M., Mo, M.L., Hannum, G., Palsson, B.Ø., Herrgard, M.J., Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox. Nat. Protoc. 2 (2007), 727–738.
-
(2007)
Nat. Protoc.
, vol.2
, pp. 727-738
-
-
Becker, S.A.1
Feist, A.M.2
Mo, M.L.3
Hannum, G.4
Palsson, B.Ø.5
Herrgard, M.J.6
-
9
-
-
84860490976
-
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
-
Caspi, R., Altman, T., Dreher, K., Fulcher, C.A., Pallavi, S., Keseler, I.M., Kothari, A., Krummenacker, M., Latendresse, M., Mueller, L.A., Ong, Q., Paley, S., Pujar, A., Shearer, A.G., Travers, M., Weerasinghe, D., Zhang, P., Karp, P.D., The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. Nucleic Acids Res. 40 (2012), D472–D753.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. D472-D753
-
-
Caspi, R.1
Altman, T.2
Dreher, K.3
Fulcher, C.A.4
Pallavi, S.5
Keseler, I.M.6
Kothari, A.7
Krummenacker, M.8
Latendresse, M.9
Mueller, L.A.10
Ong, Q.11
Paley, S.12
Pujar, A.13
Shearer, A.G.14
Travers, M.15
Weerasinghe, D.16
Zhang, P.17
Karp, P.D.18
-
10
-
-
84952638985
-
13C metabolic flux analysis of the extremely thermophilic, fast growing, xylose-utilizing Geobacillus strain LC300
-
13C metabolic flux analysis of the extremely thermophilic, fast growing, xylose-utilizing Geobacillus strain LC300. Metab. Eng. 33 (2016), 148–157.
-
(2016)
Metab. Eng.
, vol.33
, pp. 148-157
-
-
Cordova, L.T.1
Antoniewicz, M.R.2
-
11
-
-
84943239543
-
Complete genome sequence, metabolic model construction and phenotypic characterization of Geobacillus LC300, an extremely thermophilic, fast growing, xylose-utilizing bacterium
-
Cordova, L.T., Long, C.P., Venkataramanan, P., Antoniewicz, M.R., Complete genome sequence, metabolic model construction and phenotypic characterization of Geobacillus LC300, an extremely thermophilic, fast growing, xylose-utilizing bacterium. Metab. Eng. 32 (2015), 74–81.
-
(2015)
Metab. Eng.
, vol.32
, pp. 74-81
-
-
Cordova, L.T.1
Long, C.P.2
Venkataramanan, P.3
Antoniewicz, M.R.4
-
12
-
-
84966700439
-
Co-utilization of glucose and xylose by evolved Thermus thermophilus LC113 strain elucidated by 13C metabolic flux analysis and whole genome sequencing
-
Cordova, L.T., Lu, J., Cipolla, R.M., Sandoval, N.R., Long, C.P., Antoniewicz, M.R., Co-utilization of glucose and xylose by evolved Thermus thermophilus LC113 strain elucidated by 13C metabolic flux analysis and whole genome sequencing. Metab. Eng. 37 (2016), 63–71.
-
(2016)
Metab. Eng.
, vol.37
, pp. 63-71
-
-
Cordova, L.T.1
Lu, J.2
Cipolla, R.M.3
Sandoval, N.R.4
Long, C.P.5
Antoniewicz, M.R.6
-
13
-
-
84973441412
-
13C metabolic flux analysis: a new precision and synergy scoring system
-
13C metabolic flux analysis: a new precision and synergy scoring system. Metab. Eng. 38 (2016), 10–18.
-
(2016)
Metab. Eng.
, vol.38
, pp. 10-18
-
-
Crown, S.B.1
Long, C.P.2
Antoniewicz, M.R.3
-
14
-
-
84922245805
-
Integrated 13C-metabolic flux analysis of 14 parallel labeling experiments in Escherichia coli
-
Crown, S.B., Long, C.P., Antoniewicz, M.R., Integrated 13C-metabolic flux analysis of 14 parallel labeling experiments in Escherichia coli. Metab. Eng. 28 (2015), 151–158.
-
(2015)
Metab. Eng.
, vol.28
, pp. 151-158
-
-
Crown, S.B.1
Long, C.P.2
Antoniewicz, M.R.3
-
15
-
-
84957536756
-
Catabolism of branched chain amino acids contributes significantly to synthesis of odd-chain and even-chain fatty acids in 3T3-L1 adipocytes
-
Crown, S.B., Marze, N., Antoniewicz, M.R., Catabolism of branched chain amino acids contributes significantly to synthesis of odd-chain and even-chain fatty acids in 3T3-L1 adipocytes. PLoS One, 10, 2015, e0145850.
-
(2015)
PLoS One
, vol.10
, pp. e0145850
-
-
Crown, S.B.1
Marze, N.2
Antoniewicz, M.R.3
-
16
-
-
0034612342
-
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
-
Datsenko, K.A., Wanner, B.L., One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl. Acad. Sci. USA 97 (2000), 6640–6645.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 6640-6645
-
-
Datsenko, K.A.1
Wanner, B.L.2
-
17
-
-
0008467605
-
Pseudomonas natriegens, a marine bacterium with a generation time of less than 10 min
-
Eagon, R.G., Pseudomonas natriegens, a marine bacterium with a generation time of less than 10 min. J. Bacteriol. 83 (1962), 736–737.
-
(1962)
J. Bacteriol.
, vol.83
, pp. 736-737
-
-
Eagon, R.G.1
-
18
-
-
0029664919
-
Correction of 13C mass isotopomer distributions for natural stable isotope abundance
-
Fernandez, C.A., Des Rosiers, C., Previs, S.F., David, F., Brunengraber, H., Correction of 13C mass isotopomer distributions for natural stable isotope abundance. J. Mass Spectrom. 31 (1996), 255–262.
-
(1996)
J. Mass Spectrom.
, vol.31
, pp. 255-262
-
-
Fernandez, C.A.1
Des Rosiers, C.2
Previs, S.F.3
David, F.4
Brunengraber, H.5
-
19
-
-
67349270900
-
Enzymatic assembly of DNA molecules up to several hundred kilobases
-
Gibson, D.G., Young, L., Chuang, R.-Y., Venter, J.C., Hutchison, C. a., Smith, H.O., Iii, C.A.H., America, N., Enzymatic assembly of DNA molecules up to several hundred kilobases. Nat. Methods 6 (2009), 343–345.
-
(2009)
Nat. Methods
, vol.6
, pp. 343-345
-
-
Gibson, D.G.1
Young, L.2
Chuang, R.-Y.3
Venter, J.C.4
Hutchison, C.A.5
Smith, H.O.6
Iii, C.A.H.7
America, N.8
-
20
-
-
84992401825
-
Tracing metabolism from lignocellulosic biomass and gaseous substrates to products with stable-isotopes
-
Gonzalez, J.E., Antoniewicz, M.R., Tracing metabolism from lignocellulosic biomass and gaseous substrates to products with stable-isotopes. Curr. Opin. Biotechnol. 43 (2017), 86–95.
-
(2017)
Curr. Opin. Biotechnol.
, vol.43
, pp. 86-95
-
-
Gonzalez, J.E.1
Antoniewicz, M.R.2
-
21
-
-
84995622089
-
Comprehensive analysis of glucose and xylose metabolism in Escherichia coli under aerobic and anaerobic conditions by 13C metabolic flux analysis
-
Gonzalez, J.E., Long, C.P., Antoniewicz, M.R., Comprehensive analysis of glucose and xylose metabolism in Escherichia coli under aerobic and anaerobic conditions by 13C metabolic flux analysis. Metab. Eng. 39 (2017), 9–18.
-
(2017)
Metab. Eng.
, vol.39
, pp. 9-18
-
-
Gonzalez, J.E.1
Long, C.P.2
Antoniewicz, M.R.3
-
22
-
-
20044377232
-
Genome coverage, literally speaking
-
Janssen, P., Goldovsky, L., Kunin, V., Darzentas, N., Ouzounis, Ca, Genome coverage, literally speaking. EMBO Rep. 6 (2005), 397–399.
-
(2005)
EMBO Rep.
, vol.6
, pp. 397-399
-
-
Janssen, P.1
Goldovsky, L.2
Kunin, V.3
Darzentas, N.4
Ouzounis, C.5
-
23
-
-
0033982936
-
KEGG: kyoto encyclopedia of genes and genomes
-
Kanehisa, M., Goto, S., KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 28 (2000), 27–30.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
24
-
-
84858983547
-
KEGG for integration and interpretation of large-scale molecular data sets
-
Kanehisa, M., Goto, S., Sato, Y., Furumichi, M., Tanabe, M., KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Res. 40 (2012), 109–114.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 109-114
-
-
Kanehisa, M.1
Goto, S.2
Sato, Y.3
Furumichi, M.4
Tanabe, M.5
-
25
-
-
84955701469
-
Cutting the Gordian knot: identifiability of anaplerotic reactions in Corynebacterium glutamicum by means of 13C-metabolic flux analysis
-
Kappelmann, J., Wiechert, W., Noack, S., Cutting the Gordian knot: identifiability of anaplerotic reactions in Corynebacterium glutamicum by means of 13C-metabolic flux analysis. Biotechnol. Bioeng. 113 (2015), 661–674.
-
(2015)
Biotechnol. Bioeng.
, vol.113
, pp. 661-674
-
-
Kappelmann, J.1
Wiechert, W.2
Noack, S.3
-
26
-
-
84864258618
-
-
A Whole-Cell Computational Model Predicts Phenotype from Genotype
-
Karr, J.R., Sanghvi, J.C., Macklin, D.N., Gutschow, M. V, Jacobs, J.M., Bolival, B., Assad-garcia, N., Glass, J.I., Covert, M.W., 2012. A Whole-Cell Computational Model Predicts Phenotype from Genotype, pp. 389–401.
-
(2012)
, pp. 389-401
-
-
Karr, J.R.1
Sanghvi, J.C.2
Macklin, D.N.3
Gutschow, M.V.4
Jacobs, J.M.5
Bolival, B.6
Assad-garcia, N.7
Glass, J.I.8
Covert, M.W.9
-
27
-
-
85007015976
-
A genome-scale Escherichia coli kinetic metabolic model satisfying flux data for multiple mutant strains
-
Khodayari, A., Maranas, C.D., A genome-scale Escherichia coli kinetic metabolic model satisfying flux data for multiple mutant strains. Nat. Commun. 7 (2016), 1–12.
-
(2016)
Nat. Commun.
, vol.7
, pp. 1-12
-
-
Khodayari, A.1
Maranas, C.D.2
-
28
-
-
84925356213
-
Large-Scale 13C flux profiling reveals conservation of the Entner-Doudoroff pathway as a glycolytic strategy among marine bacteria that use glucose
-
Klingner, A., Bartsch, A., Dogs, M., Wagner-Döbler, I., Jahn, D., Simon, M., Brinkhoff, T., Becker, J., Wittmann, C., Large-Scale 13C flux profiling reveals conservation of the Entner-Doudoroff pathway as a glycolytic strategy among marine bacteria that use glucose. Appl. Environ. Microbiol. 81 (2015), 2408–2422.
-
(2015)
Appl. Environ. Microbiol.
, vol.81
, pp. 2408-2422
-
-
Klingner, A.1
Bartsch, A.2
Dogs, M.3
Wagner-Döbler, I.4
Jahn, D.5
Simon, M.6
Brinkhoff, T.7
Becker, J.8
Wittmann, C.9
-
29
-
-
84917705874
-
Use of adaptive laboratory evolution to discover key mutations enabling rapid growth of Escherichia coli K-12 MG1655 on glucose minimal medium
-
LaCroix, R.A., Sandberg, T.E., O'Brien, E.J., Utrilla, J., Ebrahim, A., Guzman, G.I., Szubin, R., Palsson, B.O., Feist, A.M., Use of adaptive laboratory evolution to discover key mutations enabling rapid growth of Escherichia coli K-12 MG1655 on glucose minimal medium. Appl. Environ. Microbiol. 81 (2015), 17–30.
-
(2015)
Appl. Environ. Microbiol.
, vol.81
, pp. 17-30
-
-
LaCroix, R.A.1
Sandberg, T.E.2
O'Brien, E.J.3
Utrilla, J.4
Ebrahim, A.5
Guzman, G.I.6
Szubin, R.7
Palsson, B.O.8
Feist, A.M.9
-
30
-
-
85031808199
-
-
Vibrio natriegens, a new genomic powerhouse. bioRxiv.
-
Lee, H.H., Ostrov, N., Wong, B.G., Gold, M.A., Khalil, A.S., Church, G.M., 2016. Vibrio natriegens, a new genomic powerhouse. bioRxiv.
-
(2016)
-
-
Lee, H.H.1
Ostrov, N.2
Wong, B.G.3
Gold, M.A.4
Khalil, A.S.5
Church, G.M.6
-
31
-
-
84884386184
-
COMPLETE-MFA: complementary parallel labeling experiments technique for metabolic flux analysis
-
Leighty, R.W., Antoniewicz, M.R., COMPLETE-MFA: complementary parallel labeling experiments technique for metabolic flux analysis. Metab. Eng. 20 (2013), 49–55.
-
(2013)
Metab. Eng.
, vol.20
, pp. 49-55
-
-
Leighty, R.W.1
Antoniewicz, M.R.2
-
32
-
-
84865597532
-
Parallel labeling experiments with [U-13C]glucose validate E. coli metabolic network model for 13C metabolic flux analysis
-
Leighty, R.W., Antoniewicz, M.R., Parallel labeling experiments with [U-13C]glucose validate E. coli metabolic network model for 13C metabolic flux analysis. Metab. Eng. 14 (2012), 533–541.
-
(2012)
Metab. Eng.
, vol.14
, pp. 533-541
-
-
Leighty, R.W.1
Antoniewicz, M.R.2
-
33
-
-
84937538704
-
Metabolic engineering of Escherichia coli using CRISPR-Cas9 meditated genome editing
-
Li, Y., Lin, Z., Huang, C., Zhang, Y., Wang, Z., Tang, Y. jie, Chen, T., Zhao, X., Metabolic engineering of Escherichia coli using CRISPR-Cas9 meditated genome editing. Metab. Eng. 31 (2015), 13–21.
-
(2015)
Metab. Eng.
, vol.31
, pp. 13-21
-
-
Li, Y.1
Lin, Z.2
Huang, C.3
Zhang, Y.4
Wang, Z.5
Tang, Y.J.6
Chen, T.7
Zhao, X.8
-
34
-
-
84907272917
-
Reconstruction and modeling protein translocation and compartmentalization in Escherichia coli at the genome-scale
-
Liu, J.K., O Brien, E.J., Lerman, J.A., Zengler, K., Palsson, B.O., Feist, A.M., Reconstruction and modeling protein translocation and compartmentalization in Escherichia coli at the genome-scale. BMC Syst. Biol., 8, 2014, 110.
-
(2014)
BMC Syst. Biol.
, vol.8
, pp. 110
-
-
Liu, J.K.1
O Brien, E.J.2
Lerman, J.A.3
Zengler, K.4
Palsson, B.O.5
Feist, A.M.6
-
35
-
-
84897083269
-
Metabolic flux analysis of Escherichia coli knockouts: lessons from the Keio collection and future outlook
-
Long, C.P., Antoniewicz, M.R., Metabolic flux analysis of Escherichia coli knockouts: lessons from the Keio collection and future outlook. Curr. Opin. Biotechnol. 28 (2014), 127–133.
-
(2014)
Curr. Opin. Biotechnol.
, vol.28
, pp. 127-133
-
-
Long, C.P.1
Antoniewicz, M.R.2
-
36
-
-
84907889105
-
Quantifying biomass composition by gas chromatography/mass spectrometry
-
Long, C.P., Antoniewicz, M.R., Quantifying biomass composition by gas chromatography/mass spectrometry. Anal. Chem. 86 (2014), 9423–9427.
-
(2014)
Anal. Chem.
, vol.86
, pp. 9423-9427
-
-
Long, C.P.1
Antoniewicz, M.R.2
-
37
-
-
84978249216
-
13C metabolic flux analysis of microbial and mammalian systems is enhanced with GC–MS measurements of glycogen and RNA labeling
-
Long, C.P., Au, J., Gonzalez, J.E., Antoniewicz, M.R., 13C metabolic flux analysis of microbial and mammalian systems is enhanced with GC–MS measurements of glycogen and RNA labeling. Metab. Eng. 38 (2016), 65–72.
-
(2016)
Metab. Eng.
, vol.38
, pp. 65-72
-
-
Long, C.P.1
Au, J.2
Gonzalez, J.E.3
Antoniewicz, M.R.4
-
38
-
-
84973335042
-
Characterization of physiological responses to 22 gene knockouts in Escherichia coli central carbon metabolism
-
Long, C.P., Gonzalez, J.E., Sandoval, N.R., Antoniewicz, M.R., Characterization of physiological responses to 22 gene knockouts in Escherichia coli central carbon metabolism. Metab. Eng. 37 (2016), 102–113.
-
(2016)
Metab. Eng.
, vol.37
, pp. 102-113
-
-
Long, C.P.1
Gonzalez, J.E.2
Sandoval, N.R.3
Antoniewicz, M.R.4
-
39
-
-
85030212667
-
Fast growth phenotype of E. coli K-12 from adaptive laboratory evolution does not require intracellular flux rewiring
-
Long, C.P., Gonzalez, J.E., Feist, A.M., Palsson, B.O., Antoniewicz, M.R., Fast growth phenotype of E. coli K-12 from adaptive laboratory evolution does not require intracellular flux rewiring. Metab. Eng. 44 (2017), 100–107.
-
(2017)
Metab. Eng.
, vol.44
, pp. 100-107
-
-
Long, C.P.1
Gonzalez, J.E.2
Feist, A.M.3
Palsson, B.O.4
Antoniewicz, M.R.5
-
40
-
-
84997684036
-
Complete Genome Sequence of the Fast-Growing Bacterium Vibrio natriegens Strain DSMZ 759
-
e00648-13
-
Maida, I., Bosi, E., Perrin, E., Papaleo, M.C., Orlandini, V., Fondi, M., Fani, R., Wiegel, J., Bianconi, G., Canganella, F., Complete Genome Sequence of the Fast-Growing Bacterium Vibrio natriegens Strain DSMZ 759. Genome Announc., 1, 2013, 10.1186/1471-2164-9-75.9 e00648-13.
-
(2013)
Genome Announc.
, vol.1
-
-
Maida, I.1
Bosi, E.2
Perrin, E.3
Papaleo, M.C.4
Orlandini, V.5
Fondi, M.6
Fani, R.7
Wiegel, J.8
Bianconi, G.9
Canganella, F.10
-
41
-
-
84968754630
-
Measuring the composition and stable-isotope labeling of algal biomass carbohydrates via gas chromatography/mass spectrometry
-
McConnell, B.O., Antoniewicz, M.R., Measuring the composition and stable-isotope labeling of algal biomass carbohydrates via gas chromatography/mass spectrometry. Anal. Chem. 88 (2016), 4624–4628.
-
(2016)
Anal. Chem.
, vol.88
, pp. 4624-4628
-
-
McConnell, B.O.1
Antoniewicz, M.R.2
-
42
-
-
84885367114
-
Genome-scale models of metabolism and gene expression extend and refine growth phenotype prediction
-
O'Brien, E.J., Lerman, J.A., Chang, R.L., Hyduke, D.R., Palsson, B.Ø., Genome-scale models of metabolism and gene expression extend and refine growth phenotype prediction. Mol. Syst. Biol., 9, 2013, 693.
-
(2013)
Mol. Syst. Biol.
, vol.9
, pp. 693
-
-
O'Brien, E.J.1
Lerman, J.A.2
Chang, R.L.3
Hyduke, D.R.4
Palsson, B.Ø.5
-
43
-
-
51249195920
-
Some observations on the physiology of Pseudomonas natriegens nov. spec
-
Payne, W.J., Eagon, R.G., Williams, A.K., Some observations on the physiology of Pseudomonas natriegens nov. spec. Antonie Van. Leeuwenhoek 27 (1961), 121–128.
-
(1961)
Antonie Van. Leeuwenhoek
, vol.27
, pp. 121-128
-
-
Payne, W.J.1
Eagon, R.G.2
Williams, A.K.3
-
44
-
-
0343035686
-
Stoichiometric model of Escherichia coli metabolism: incorporation of growth-rate dependent biomass composition and mechanistic energy requirements
-
Pramanik, J., Keasling, J.D., Stoichiometric model of Escherichia coli metabolism: incorporation of growth-rate dependent biomass composition and mechanistic energy requirements. Biotechnol. Bioeng. 56 (1997), 398–421.
-
(1997)
Biotechnol. Bioeng.
, vol.56
, pp. 398-421
-
-
Pramanik, J.1
Keasling, J.D.2
-
45
-
-
84962602150
-
Evolution of E. coli on [U-13C]Glucose Reveals a Negligible Isotopic Influence on Metabolism and Physiology
-
Sandberg, T.E., Long, C.P., Gonzalez, J.E., Feist, A.M., Antoniewicz, M.R., Palsson, B.O., Evolution of E. coli on [U-13C]Glucose Reveals a Negligible Isotopic Influence on Metabolism and Physiology. PLoS One, 11, 2016, e0151130.
-
(2016)
PLoS One
, vol.11
, pp. e0151130
-
-
Sandberg, T.E.1
Long, C.P.2
Gonzalez, J.E.3
Feist, A.M.4
Antoniewicz, M.R.5
Palsson, B.O.6
-
46
-
-
1342325419
-
The soluble and membrane-bound transhydrogenases UdhA and PntAB have divergent functions in NADPH metabolism of Escherichia coli
-
Sauer, U., Canonaco, F., Heri, S., Perrenoud, A., Fischer, E., The soluble and membrane-bound transhydrogenases UdhA and PntAB have divergent functions in NADPH metabolism of Escherichia coli. J. Biol. Chem. 279 (2004), 6613–6619.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 6613-6619
-
-
Sauer, U.1
Canonaco, F.2
Heri, S.3
Perrenoud, A.4
Fischer, E.5
-
47
-
-
79551662521
-
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0
-
Schellenberger, J., Que, R., Fleming, R.M.T., Thiele, I., Orth, J.D., Feist, A.M., Zielinski, D.C., Bordbar, A., Lewis, N.E., Rahmanian, S., Kang, J., Hyduke, D.R., Palsson, B.Ø., Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0. Nat. Protoc. 6 (2011), 1290–1307.
-
(2011)
Nat. Protoc.
, vol.6
, pp. 1290-1307
-
-
Schellenberger, J.1
Que, R.2
Fleming, R.M.T.3
Thiele, I.4
Orth, J.D.5
Feist, A.M.6
Zielinski, D.C.7
Bordbar, A.8
Lewis, N.E.9
Rahmanian, S.10
Kang, J.11
Hyduke, D.R.12
Palsson, B.Ø.13
-
48
-
-
58749106454
-
Ensemble modeling of metabolic networks
-
Tran, L.M., Rizk, M.L., Liao, J.C., Ensemble modeling of metabolic networks. Biophys. J. 95 (2008), 5606–5617.
-
(2008)
Biophys. J.
, vol.95
, pp. 5606-5617
-
-
Tran, L.M.1
Rizk, M.L.2
Liao, J.C.3
-
49
-
-
84967180536
-
Global rebalancing of cellular resources by pleiotropic point mutations illustrates a multi-scale mechanism of adaptive evolution
-
Utrilla, J., O'Brien, E.J., Chen, K., McCloskey, D., Cheung, J., Wang, H., Armenta-Medina, D., Feist, A.M., Palsson, B.O., Global rebalancing of cellular resources by pleiotropic point mutations illustrates a multi-scale mechanism of adaptive evolution. Cell Syst. 2 (2016), 260–271.
-
(2016)
Cell Syst.
, vol.2
, pp. 260-271
-
-
Utrilla, J.1
O'Brien, E.J.2
Chen, K.3
McCloskey, D.4
Cheung, J.5
Wang, H.6
Armenta-Medina, D.7
Feist, A.M.8
Palsson, B.O.9
-
50
-
-
68949161807
-
Programming cells by multiplex genome engineering and accelerated evolution
-
Wang, H.H., Isaacs, F.J., Carr, P.A., Sun, Z.Z., Xu, G., Forest, C.R., Church, G.M., Programming cells by multiplex genome engineering and accelerated evolution. Nature 460 (2009), 894–898.
-
(2009)
Nature
, vol.460
, pp. 894-898
-
-
Wang, H.H.1
Isaacs, F.J.2
Carr, P.A.3
Sun, Z.Z.4
Xu, G.5
Forest, C.R.6
Church, G.M.7
-
51
-
-
84997771443
-
Draft genome sequence of the fast-growing marine bacterium vibrio natriegens strain ATCC 14048
-
Wang, Z., Lin, B., Iv, W.J.H., Vora, G.J., Draft genome sequence of the fast-growing marine bacterium vibrio natriegens strain ATCC 14048. Genome Announc. 1 (2013), e00589–13.
-
(2013)
Genome Announc.
, vol.1
, pp. e00589-13
-
-
Wang, Z.1
Lin, B.2
Iv, W.J.H.3
Vora, G.J.4
-
52
-
-
84984666893
-
Vibrio natriegens as a fast-growing host for molecular biology - supplementary data
-
Weinstock, M.T., Hesek, E.D., Wilson, C.M., Gibson, D.G., Vibrio natriegens as a fast-growing host for molecular biology - supplementary data. Nat. Methods 13 (2016), 1–39.
-
(2016)
Nat. Methods
, vol.13
, pp. 1-39
-
-
Weinstock, M.T.1
Hesek, E.D.2
Wilson, C.M.3
Gibson, D.G.4
-
53
-
-
84992321320
-
Engineering the biological conversion of methanol to specialty chemicals in Escherichia coli
-
Whitaker, W.B., Jones, J.A., Bennett, R.K., Gonzalez, J.E., Vernacchio, V.R., Collins, S.M., Palmer, M.A., Schmidt, S., Antoniewicz, M.R., Koffas, M.A., Papoutsakis, E.T., Engineering the biological conversion of methanol to specialty chemicals in Escherichia coli. Metab. Eng. 39 (2017), 49–59.
-
(2017)
Metab. Eng.
, vol.39
, pp. 49-59
-
-
Whitaker, W.B.1
Jones, J.A.2
Bennett, R.K.3
Gonzalez, J.E.4
Vernacchio, V.R.5
Collins, S.M.6
Palmer, M.A.7
Schmidt, S.8
Antoniewicz, M.R.9
Koffas, M.A.10
Papoutsakis, E.T.11
-
54
-
-
51049091904
-
Quantifying reductive carboxylation flux of glutamine to lipid in a brown adipocyte cell line
-
Yoo, H., Antoniewicz, M.R., Stephanopoulos, G., Kelleher, J.K., Quantifying reductive carboxylation flux of glutamine to lipid in a brown adipocyte cell line. J. Biol. Chem. 283 (2008), 20621–20627.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 20621-20627
-
-
Yoo, H.1
Antoniewicz, M.R.2
Stephanopoulos, G.3
Kelleher, J.K.4
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