Erratum: Landscape of X chromosome inactivation across human tissues (Nature (2017) 550 (244-248) DOI: 10.1038/nature24265);Landscape of X chromosome inactivation across human tissues
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Tukiainen, Taru
a,b,i
Villani, Alexandra Chloé
a,b
Yen, Angela
b,c
Rivas, Manuel A
a,b,d
Marshall, Jamie L
a,b
Satija, Rahul
b,e,f
Aguirre, Matt
a,b
Gauthier, Laura
a,b
Fleharty, Mark
b
Kirby, Andrew
a,b
Cummings, Beryl B
a,b,i
Castel, Stephane E
e,g,u
Karczewski, Konrad J
a,b,i
Aguet, François
b,i
Byrnes, Andrea
a,b
Gelfand, Ellen T
i
Getz, Gad
i,j
Hadley, Kane
i
Handsaker, Robert E
i,k
Huang, Katherine H
i
Kashin, Seva
i,k
Lek, Monkol
a,i
Li, Xiao
d,i
Nedzel, Jared L
i
Nguyen, Duyen T
i
Noble, Michael S
i
Segrè, Ayellet V
i
Trowbridge, Casandra A
i
Abell, Nathan S
d,l
Balliu, Brunilda
l
Barshir, Ruth
m
Basha, Omer
m
Battle, Alexis
n
Bogu, Gireesh K
o,p
Brown, Andrew
q,r,s
Brown, Christopher D
t
Chen, Lin S
v
Chiang, Colby
w
Conrad, Donald F
w
Cox, Nancy J
x
Damani, Farhan N
n
Davis, Joe R
d,l
Delaneau, Olivier
q,r,s
Dermitzakis, Emmanouil T
q,r,s
Engelhardt, Barbara E
y
Eskin, Eleazar
z,aa
Ferreira, Pedro G
ab,ac
Frésard, Laure
d,l
Gamazon, Eric R
x,ad
Garrido Martín, Diego
o,p
Gewirtz, Ariel D H
ae
Gliner, Genna
y
Gloudemans, Michael J
d,l
Guigo, Roderic
o,p,af
Hall, Ira M
w
Han, Buhm
ag
He, Yuan
ah
Hormozdiari, Farhad
z
Howald, Cedric
q,r,s
Im, Hae Kyung
v
Jo, Brian
ae
Kang, Eun Yong
z
Kim, Yungil
n
Kim Hellmuth, Sarah
e,u
Lappalainen, Tuuli
e,g,u
Li, Gen
ai
Li, Xin
l
Liu, Boxiang
d,l
Mangul, Serghei
z
McCarthy, Mark I
aj,ak,al
McDowell, Ian C
am
Mohammadi, Pejman
e,u
Monlong, Jean
o,p,an
Montgomery, Stephen B
d,l
Muñoz Aguirre, Manuel
o,p,ao
Ndungu, Anne W
aj
Nicolae, Dan L
v
Nobel, Andrew B
ap,aq
Oliva, Meritxell
v,ar
Ongen, Halit
q,r,s
Palowitch, John J
ap
Panousis, Nikolaos
q,r,s
Papasaikas, Panagiotis
o,p
Park, Yoson
t
Parsana, Princy
n
Payne, Anthony J
aj
Peterson, Christine B
as
Quan, Jie
at
Reverter, Ferran
o,p,au
Sabatti, Chiara
d
Saha, Ashis
n
Sammeth, Michael
av
Scott, Alexandra J
w
Shabalin, Andrey A
aw
Sodaei, Reza
o,p
Stephens, Matthew
v
Stranger, Barbara E
v,ar
Strober, Benjamin J
ah
Sul, Jae Hoon
ax
Tsang, Emily K
d,l
Urbut, Sarah
v
Van De Bunt, Martijn
aj,ak
Wang, Gao
v
Wen, Xiaoquan
ay
Wright, Fred A
az
Xi, Hualin S
at
Yeger Lotem, Esti
m
Zappala, Zachary
d,l
Zaugg, Judith B
ba
Zhou, Yi Hui
az
Akey, Joshua M
ae
Bates, Daniel
bb
Chan, Joanne
d
Claussnitzer, Melina
i,k,bc
Demanelis, Kathryn
v
Diegel, Morgan
bb
Doherty, Jennifer A
bd
Feinberg, Andrew P
ah,be,bf
Fernando, Marian S
v,ar
Halow, Jessica
bb
Hansen, Kasper D
be,bg
Haugen, Eric
bb
Hickey, Peter F
bg
Hou, Lei
c,i
Jasmine, Farzana
v
Jian, Ruiqi
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Jiang, Lihua
d
Johnson, Audra
bb
Kaul, Rajinder
bb
Kellis, Manolis
c,i
Kibriya, Muhammad G
v
Lee, Kristen
bb
Li, Jin Billy
d
Li, Qin
d
Lin, Jessica
d,bh
Lin, Shin
d,bi
Linder, Sandra
d,l
Linke, Caroline
v,ar
Liu, Yaping
c,i
Maurano, Matthew T
bj
Molinie, Benoit
i
Nelson, Jemma
bb
Neri, Fidencio J
bb
Park, Yongjin
c,i
Pierce, Brandon L
v
Rinaldi, Nicola J
c,i
Rizzardi, Lindsay F
be
Sandstrom, Richard
bb
Skol, Andrew
v,ar
Smith, Kevin S
d,l
Snyder, Michael P
d
Stamatoyannopoulos, John
bb,bh
Tang, Hua
d
Wang, Li
i
Wang, Meng
d
Van Wittenberghe, Nicholas
i
Wu, Fan
v,ar
Zhang, Rui
d
Nierras, Concepcion R
bk
Branton, Philip A
bl
Carithers, Latarsha J
bl,bm
Guan, Ping
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Moore, Helen M
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Rao, Abhi
bl
Vaught, Jimmie B
bl
Gould, Sarah E
bn
Lockart, Nicole C
bn
Martin, Casey
bn
Struewing, Jeffery P
bn
Volpi, Simona
bn
Addington, Anjene M
bo
Koester, Susan E
bo
Little, A Roger
bp
Brigham, Lori E
bq
Hasz, Richard
br
Hunter, Marcus
bs
Johns, Christopher
bt
Johnson, Mark
bu
Kopen, Gene
bv
Leinweber, William F
bv
Lonsdale, John T
bv
McDonald, Alisa
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Mestichelli, Bernadette
bv
Myer, Kevin
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Roe, Brian
bs
Salvatore, Michael
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Shad, Saboor
bv
Thomas, Jeffrey A
bv
Walters, Gary
bu
Washington, Michael
bu
Wheeler, Joseph
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Bridge, Jason
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Foster, Barbara A
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Gillard, Bryan M
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Karasik, Ellen
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Kumar, Rachna
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Miklos, Mark
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Moser, Michael T
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Jewell, Scott D
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Montroy, Robert G
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Rohrer, Daniel C
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Valley, Dana R
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Davis, David A
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Mash, Deborah C
bz
Undale, Anita H
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Smith, Anna M
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Tabor, David E
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Roche, Nancy V
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McLean, Jeffrey A
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Vatanian, Negin
cb
Robinson, Karna L
cb
Sobin, Leslie
cb
Barcus, Mary E
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Valentino, Kimberly M
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Qi, Liqun
cb
Hunter, Steven
cb
Hariharan, Pushpa
cb
Singh, Shilpi
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Um, Ki Sung
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Matose, Takunda
cb
Tomaszewski, Maria M
cb
Barker, Laura K
cc
Mosavel, Maghboeba
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Siminoff, Laura A
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Traino, Heather M
cc
Flicek, Paul
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Juettemann, Thomas
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Ruffier, Magali
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Sheppard, Dan
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Taylor, Kieron
ce
Trevanion, Stephen J
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Zerbino, Daniel R
ce
Craft, Brian
cf
Goldman, Mary
cf
Haeussler, Maximilian
cf
Kent, W James
cf
Lee, Christopher M
cf
Paten, Benedict
cf
Rosenbloom, Kate R
cf
Vivian, John
cf
Zhu, Jingchun
cf
Regev, Aviv
b,h
Ardlie, Kristin G
b,i
Hacohen, Nir
a,b
MacArthur, Daniel G
a,b,i
more..
|
-
1
-
-
15244353967
-
X-inactivation profile reveals extensive variability in X-linked gene expression in females
-
Carrel, L. & Willard, H. F. X-inactivation profile reveals extensive variability in X-linked gene expression in females. Nature 434, 400-404 (2005).
-
(2005)
Nature
, vol.434
, pp. 400-404
-
-
Carrel, L.1
Willard, H.F.2
-
2
-
-
84886735355
-
Analysis of expressed SNPs identifies variable extents of expression from the human inactive X chromosome
-
Cotton, A. M. et al. Analysis of expressed SNPs identifies variable extents of expression from the human inactive X chromosome. Genome Biol. 14, R122 (2013).
-
(2013)
Genome Biol
, vol.14
, pp. R122
-
-
Cotton, A.M.1
-
3
-
-
84936091491
-
Landscape of DNA methylation on the X chromosome reflects CpG density, functional chromatin state and X-chromosome inactivation
-
Cotton, A. M. et al. Landscape of DNA methylation on the X chromosome reflects CpG density, functional chromatin state and X-chromosome inactivation. Hum. Mol. Genet. 24, 1528-1539 (2015).
-
(2015)
Hum. Mol. Genet
, vol.24
, pp. 1528-1539
-
-
Cotton, A.M.1
-
4
-
-
84938495948
-
Human body epigenome maps reveal noncanonical DNA methylation variation
-
Schultz, M. D. et al. Human body epigenome maps reveal noncanonical DNA methylation variation. Nature 523, 212-216 (2015).
-
(2015)
Nature
, vol.523
, pp. 212-216
-
-
Schultz, M.D.1
-
5
-
-
85073891768
-
Large-scale population study of human cell lines indicates that dosage compensation is virtually complete
-
Johnston, C. M. et al. Large-scale population study of human cell lines indicates that dosage compensation is virtually complete. PLoS Genet. 4, e9 (2008).
-
(2008)
PLoS Genet
, vol.4
, pp. e9
-
-
Johnston, C.M.1
-
6
-
-
84901743386
-
Chromosome X-wide association study identifies loci for fasting insulin and height and evidence for incomplete dosage compensation
-
Tukiainen, T. et al. Chromosome X-wide association study identifies loci for fasting insulin and height and evidence for incomplete dosage compensation. PLoS Genet. 10, e1004127 (2014).
-
(2014)
PLoS Genet
, vol.10
, pp. e1004127
-
-
Tukiainen, T.1
-
7
-
-
84901029300
-
X chromosome regulation: Diverse patterns in development, tissues and disease
-
Deng, X., Berletch, J. B., Nguyen, D. K. & Disteche, C. M. X chromosome regulation: diverse patterns in development, tissues and disease. Nat. Rev. Genet. 15, 367-378 (2014).
-
(2014)
Nat. Rev. Genet
, vol.15
, pp. 367-378
-
-
Deng, X.1
Berletch, J.B.2
Nguyen, D.K.3
Disteche, C.M.4
-
8
-
-
33748675306
-
X chromosome-inactivation patterns of 1, 005 phenotypically unaffected females
-
Amos-Landgraf, J. M. et al. X chromosome-inactivation patterns of 1, 005 phenotypically unaffected females. Am. J. Hum. Genet. 79, 493-499 (2006).
-
(2006)
Am. J. Hum. Genet
, vol.79
, pp. 493-499
-
-
Amos-Landgraf, J.M.1
-
9
-
-
84879663784
-
Global epigenomic reconfiguration during mammalian brain development
-
Lister, R. et al. Global epigenomic reconfiguration during mammalian brain development. Science 341, 1237905 (2013).
-
(2013)
Science
, vol.341
, pp. 1237905
-
-
Lister, R.1
-
10
-
-
80051639816
-
Transcriptional profiling of human liver identifies sex-biased genes associated with polygenic dyslipidemia and coronary artery disease
-
Zhang, Y. et al. Transcriptional profiling of human liver identifies sex-biased genes associated with polygenic dyslipidemia and coronary artery disease. PLoS ONE 6, e23506 (2011).
-
(2011)
PLoS ONE
, vol.6
, pp. e23506
-
-
Zhang, Y.1
-
11
-
-
84926295016
-
Escape from X inactivation varies in mouse tissues
-
Berletch, J. B. et al. Escape from X inactivation varies in mouse tissues. PLoS Genet. 11, e1005079 (2015).
-
(2015)
PLoS Genet
, vol.11
, pp. e1005079
-
-
Berletch, J.B.1
-
12
-
-
84929001104
-
The genotype-tissue expression (GTEx) pilot analysis: Multitissue gene regulation in humans
-
The GTEx Consortium
-
The GTEx Consortium. The Genotype-Tissue Expression (GTEx) pilot analysis: multitissue gene regulation in humans. Science 348, 648-660 (2015).
-
(2015)
Science
, vol.348
, pp. 648-660
-
-
-
14
-
-
84929015296
-
The human transcriptome across tissues and individuals
-
Melé, M. et al. The human transcriptome across tissues and individuals. Science 348, 660-665 (2015).
-
(2015)
Science
, vol.348
, pp. 660-665
-
-
Melé, M.1
-
15
-
-
84966714447
-
Escape artists of the X chromosome
-
Balaton, B. P. & Brown, C. J. Escape artists of the X chromosome. Trends Genet. 32, 348-359 (2016).
-
(2016)
Trends Genet
, vol.32
, pp. 348-359
-
-
Balaton, B.P.1
Brown, C.J.2
-
16
-
-
15244363491
-
The DNA sequence of the human X chromosome
-
Ross, M. T. et al. The DNA sequence of the human X chromosome. Nature 434, 325-337 (2005).
-
(2005)
Nature
, vol.434
, pp. 325-337
-
-
Ross, M.T.1
-
17
-
-
0034978556
-
Highly expressed genes in yeast evolve slowly
-
Pál, C., Papp, B. & Hurst, L. D. Highly expressed genes in yeast evolve slowly. Genetics 158, 927-931 (2001).
-
(2001)
Genetics
, vol.158
, pp. 927-931
-
-
Pál, C.1
Papp, B.2
Hurst, L.D.3
-
18
-
-
0347766006
-
Elevated rates of protein secretion, evolution, and disease among tissue-specific genes
-
Winter, E. E., Goodstadt, L. & Ponting, C. P. Elevated rates of protein secretion, evolution, and disease among tissue-specific genes. Genome Res. 14, 54-61 (2004).
-
(2004)
Genome Res
, vol.14
, pp. 54-61
-
-
Winter, E.E.1
Goodstadt, L.2
Ponting, C.P.3
-
19
-
-
84923647450
-
Computational and analytical challenges in single-cell transcriptomics
-
Stegle, O., Teichmann, S. A. & Marioni, J. C. Computational and analytical challenges in single-cell transcriptomics. Nat. Rev. Genet. 16, 133-145 (2015).
-
(2015)
Nat. Rev. Genet
, vol.16
, pp. 133-145
-
-
Stegle, O.1
Teichmann, S.A.2
Marioni, J.C.3
-
20
-
-
84989827429
-
Single-cell analyses of X chromosome inactivation dynamics and pluripotency during differentiation
-
Chen, G. et al. Single-cell analyses of X chromosome inactivation dynamics and pluripotency during differentiation. Genome Res. 26, 1342-1354 (2016).
-
(2016)
Genome Res
, vol.26
, pp. 1342-1354
-
-
Chen, G.1
-
21
-
-
84892179132
-
Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells
-
Deng, Q., Ramsköld, D., Reinius, B. & Sandberg, R. Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells. Science 343, 193-196 (2014).
-
(2014)
Science
, vol.343
, pp. 193-196
-
-
Deng, Q.1
Ramsköld, D.2
Reinius, B.3
Sandberg, R.4
-
22
-
-
84988692357
-
Analysis of allelic expression patterns in clonal somatic cells by single-cell RNA-seq
-
Reinius, B. et al. Analysis of allelic expression patterns in clonal somatic cells by single-cell RNA-seq. Nat. Genet. 48, 1430-1435 (2016).
-
(2016)
Nat. Genet
, vol.48
, pp. 1430-1435
-
-
Reinius, B.1
-
23
-
-
85011357467
-
Random X-chromosome inactivation dynamics in vivo by single-cell RNA sequencing
-
Wang, M., Lin, F., Xing, K. & Liu, L. Random X-chromosome inactivation dynamics in vivo by single-cell RNA sequencing. BMC Genomics 18, 90 (2017).
-
(2017)
BMC Genomics
, vol.18
, pp. 90
-
-
Wang, M.1
Lin, F.2
Xing, K.3
Liu, L.4
-
25
-
-
84962688754
-
Single-cell RNA-seq reveals lineage and X chromosome dynamics in human preimplantation embryos
-
Petropoulos, S. et al. Single-cell RNA-seq reveals lineage and X chromosome dynamics in human preimplantation embryos. Cell 165, 1012-1026 (2016).
-
(2016)
Cell
, vol.165
, pp. 1012-1026
-
-
Petropoulos, S.1
-
26
-
-
85018582872
-
Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors
-
eaah4573
-
Villani, A. C. et al. Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors. Science 356, eaah4573 (2017).
-
(2017)
Science
, vol.356
-
-
Villani, A.C.1
-
27
-
-
84920733410
-
Biased allelic expression in human primary fibroblast single cells
-
Borel, C. et al. Biased allelic expression in human primary fibroblast single cells. Am. J. Hum. Genet. 96, 70-80 (2015).
-
(2015)
Am. J. Hum. Genet
, vol.96
, pp. 70-80
-
-
Borel, C.1
-
28
-
-
84944901262
-
Characterizing noise structure in single-cell RNA-seq distinguishes genuine from technical stochastic allelic expression
-
Kim, J. K., Kolodziejczyk, A. A., Ilicic, T., Teichmann, S. A. & Marioni, J. C. Characterizing noise structure in single-cell RNA-seq distinguishes genuine from technical stochastic allelic expression. Nat. Commun. 6, 8687 (2015).
-
(2015)
Nat. Commun
, vol.6
, pp. 8687
-
-
Kim, J.K.1
Kolodziejczyk, A.A.2
Ilicic, T.3
Teichmann, S.A.4
Marioni, J.C.5
-
29
-
-
84895562012
-
From single-cell to cell-pool transcriptomes: Stochasticity in gene expression and RNA splicing
-
Marinov, G. K. et al. From single-cell to cell-pool transcriptomes: stochasticity in gene expression and RNA splicing. Genome Res. 24, 496-510 (2014).
-
(2014)
Genome Res
, vol.24
, pp. 496-510
-
-
Marinov, G.K.1
-
30
-
-
84899473294
-
Mammalian Y chromosomes retain widely expressed dosage-sensitive regulators
-
Bellott, D. W. et al. Mammalian Y chromosomes retain widely expressed dosage-sensitive regulators. Nature 508, 494-499 (2014).
-
(2014)
Nature
, vol.508
, pp. 494-499
-
-
Bellott, D.W.1
-
31
-
-
84923362619
-
Integrative analysis of 111 reference human epigenomes
-
Roadmap Epigenomics Consortium et al
-
Roadmap Epigenomics Consortium et al. Integrative analysis of 111 reference human epigenomes. Nature 518, 317-330 (2015).
-
(2015)
Nature
, vol.518
, pp. 317-330
-
-
|