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Volumn 14, Issue 11, 2013, Pages

Analysis of expressed SNPs identifies variable extents of expression from the human inactive X chromosome

Author keywords

[No Author keywords available]

Indexed keywords

ALLELIC IMBALANCE; ARTICLE; CHROMATIN IMMUNOPRECIPITATION; FEMALE; GENE CONTROL; GENE EXPRESSION; HISTONE MODIFICATION; HUMAN; SINGLE NUCLEOTIDE POLYMORPHISM; X CHROMOSOME INACTIVATION; ALLELE; GENE EXPRESSION REGULATION; GENETICS; MULTIGENE FAMILY; X CHROMOSOMAL INHERITANCE; X CHROMOSOME; CHROMOSOME ANALYSIS; CHROMOSOME INACTIVATION; CONTROLLED STUDY; MALE; SEX DIFFERENCE;

EID: 84886735355     PISSN: None     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/gb-2013-14-11-r122     Document Type: Article
Times cited : (124)

References (38)
  • 3
    • 77954763156 scopus 로고    scopus 로고
    • Genome-wide allele-specific analysis: insights into regulatory variation
    • Pastinen T. Genome-wide allele-specific analysis: insights into regulatory variation. Nat Rev Genet 2010, 11:533-538.
    • (2010) Nat Rev Genet , vol.11 , pp. 533-538
    • Pastinen, T.1
  • 4
    • 38149059844 scopus 로고    scopus 로고
    • A skewed view of X chromosome inactivation
    • 10.1172/JCI34470, 2147673, 18097476
    • Minks J, Robinson WP, Brown CJ. A skewed view of X chromosome inactivation. J Clin Invest 2008, 118:20-23. 10.1172/JCI34470, 2147673, 18097476.
    • (2008) J Clin Invest , vol.118 , pp. 20-23
    • Minks, J.1    Robinson, W.P.2    Brown, C.J.3
  • 5
    • 51849156965 scopus 로고    scopus 로고
    • Extreme clonality in lymphoblastoid cell lines with implications for allele specific expression analyses
    • 10.1371/journal.pone.0002966, 2494943, 18698422
    • Plagnol V, Uz E, Wallace C, Stevens H, Clayton D, Ozcelik T, Todd JA. Extreme clonality in lymphoblastoid cell lines with implications for allele specific expression analyses. PLoS ONE 2008, 3:e2966. 10.1371/journal.pone.0002966, 2494943, 18698422.
    • (2008) PLoS ONE , vol.3
    • Plagnol, V.1    Uz, E.2    Wallace, C.3    Stevens, H.4    Clayton, D.5    Ozcelik, T.6    Todd, J.A.7
  • 6
    • 79960484375 scopus 로고    scopus 로고
    • Gene silencing in X-chromosome inactivation: advances in understanding facultative heterochromatin formation
    • 10.1038/nrg3035, 21765457
    • Wutz A. Gene silencing in X-chromosome inactivation: advances in understanding facultative heterochromatin formation. Nat Rev Genet 2011, 12:542-553. 10.1038/nrg3035, 21765457.
    • (2011) Nat Rev Genet , vol.12 , pp. 542-553
    • Wutz, A.1
  • 7
    • 0031820331 scopus 로고    scopus 로고
    • X-chromosome inactivation: a repeat hypothesis
    • 10.1159/000014969, 9678347
    • Lyon MF. X-chromosome inactivation: a repeat hypothesis. Cytogenet Cell Genet 1998, 80:133-137. 10.1159/000014969, 9678347.
    • (1998) Cytogenet Cell Genet , vol.80 , pp. 133-137
    • Lyon, M.F.1
  • 8
    • 84867163018 scopus 로고    scopus 로고
    • Spreading of X chromosome inactivation via a hierarchy of defined Polycomb stations
    • 10.1101/gr.133751.111, 3460182, 22948768
    • Pinter SF, Sadreyev RI, Yildirim E, Jeon Y, Ohsumi TK, Borowsky M, Lee JT. Spreading of X chromosome inactivation via a hierarchy of defined Polycomb stations. Genome Res 2012, 22:1864-1876. 10.1101/gr.133751.111, 3460182, 22948768.
    • (2012) Genome Res , vol.22 , pp. 1864-1876
    • Pinter, S.F.1    Sadreyev, R.I.2    Yildirim, E.3    Jeon, Y.4    Ohsumi, T.K.5    Borowsky, M.6    Lee, J.T.7
  • 9
    • 0020324632 scopus 로고
    • Derepression with decreased expression of the G6PD locus on the inactive X chromosome in normal human cells
    • 10.1016/0092-8674(82)90175-1, 7116451
    • Migeon BR, Wolf SF, Mareni C, Axelman J. Derepression with decreased expression of the G6PD locus on the inactive X chromosome in normal human cells. Cell 1982, 29:595-600. 10.1016/0092-8674(82)90175-1, 7116451.
    • (1982) Cell , vol.29 , pp. 595-600
    • Migeon, B.R.1    Wolf, S.F.2    Mareni, C.3    Axelman, J.4
  • 10
    • 15244353967 scopus 로고    scopus 로고
    • X-inactivation profile reveals extensive variability in X-linked gene expression in females
    • 10.1038/nature03479, 15772666
    • Carrel L, Willard HF. X-inactivation profile reveals extensive variability in X-linked gene expression in females. Nature 2005, 434:400-404. 10.1038/nature03479, 15772666.
    • (2005) Nature , vol.434 , pp. 400-404
    • Carrel, L.1    Willard, H.F.2
  • 12
    • 33750940412 scopus 로고    scopus 로고
    • X chromosome gene expression in human tissues: male and female comparisons
    • 10.1016/j.ygeno.2006.07.016, 16949791
    • Talebizadeh Z, Simon SD, Butler MG. X chromosome gene expression in human tissues: male and female comparisons. Genomics 2006, 88:675-681. 10.1016/j.ygeno.2006.07.016, 16949791.
    • (2006) Genomics , vol.88 , pp. 675-681
    • Talebizadeh, Z.1    Simon, S.D.2    Butler, M.G.3
  • 15
    • 0033594960 scopus 로고    scopus 로고
    • Heterogeneous gene expression from the inactive X chromosome: an X-linked gene that escapes X inactivation in some human cell lines but is inactivated in others
    • 10.1073/pnas.96.13.7364, 22091, 10377420
    • Carrel L, Willard HF. Heterogeneous gene expression from the inactive X chromosome: an X-linked gene that escapes X inactivation in some human cell lines but is inactivated in others. Proc Natl Acad Sci USA 1999, 96:7364-7369. 10.1073/pnas.96.13.7364, 22091, 10377420.
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 7364-7369
    • Carrel, L.1    Willard, H.F.2
  • 16
    • 0033358525 scopus 로고    scopus 로고
    • Polymorphic X-chromosome inactivation of the human TIMP1 gene
    • 10.1086/302556, 1377976, 10441576
    • Anderson C, Brown CJ. Polymorphic X-chromosome inactivation of the human TIMP1 gene. Am J Hum Genet 1999, 65:699-708. 10.1086/302556, 1377976, 10441576.
    • (1999) Am J Hum Genet , vol.65 , pp. 699-708
    • Anderson, C.1    Brown, C.J.2
  • 17
    • 80053135073 scopus 로고    scopus 로고
    • Allele-specific distribution of RNA polymerase II on female X chromosomes
    • 10.1093/hmg/ddr315, 3177651, 21791549
    • Kucera KS, Reddy TE, Pauli F, Gertz J, Logan JE, Myers RM, Willard HF. Allele-specific distribution of RNA polymerase II on female X chromosomes. Hum Mol Genet 2011, 20:3964-3973. 10.1093/hmg/ddr315, 3177651, 21791549.
    • (2011) Hum Mol Genet , vol.20 , pp. 3964-3973
    • Kucera, K.S.1    Reddy, T.E.2    Pauli, F.3    Gertz, J.4    Logan, J.E.5    Myers, R.M.6    Willard, H.F.7
  • 18
    • 55949099351 scopus 로고    scopus 로고
    • Escape from X chromosome inactivation is an intrinsic property of the Jarid1c locus
    • 10.1073/pnas.0807765105, 2579377, 18971342
    • Li N, Carrel L. Escape from X chromosome inactivation is an intrinsic property of the Jarid1c locus. Proc Natl Acad Sci USA 2008, 105:17055-17060. 10.1073/pnas.0807765105, 2579377, 18971342.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 17055-17060
    • Li, N.1    Carrel, L.2
  • 19
    • 11244258156 scopus 로고    scopus 로고
    • Boundaries between chromosomal domains of X inactivation and escape bind CTCF and lack CpG methylation during early development
    • 10.1016/j.devcel.2004.10.018, 15669143
    • Filippova GN, Cheng MK, Moore JM, Truong JP, Hu YJ, Nguyen DK, Tsuchiya KD, Disteche CM. Boundaries between chromosomal domains of X inactivation and escape bind CTCF and lack CpG methylation during early development. Dev Cell 2005, 8:31-42. 10.1016/j.devcel.2004.10.018, 15669143.
    • (2005) Dev Cell , vol.8 , pp. 31-42
    • Filippova, G.N.1    Cheng, M.K.2    Moore, J.M.3    Truong, J.P.4    Hu, Y.J.5    Nguyen, D.K.6    Tsuchiya, K.D.7    Disteche, C.M.8
  • 20
    • 36249017308 scopus 로고    scopus 로고
    • Widespread monoallelic expression on human autosomes
    • 10.1126/science.1148910, 18006746
    • Gimelbrant A, Hutchinson JN, Thompson BR, Chess A. Widespread monoallelic expression on human autosomes. Science 2007, 318:1136-1140. 10.1126/science.1148910, 18006746.
    • (2007) Science , vol.318 , pp. 1136-1140
    • Gimelbrant, A.1    Hutchinson, J.N.2    Thompson, B.R.3    Chess, A.4
  • 22
    • 0026678490 scopus 로고
    • Methylation of HpaII and HhaI sites near the polymorphic CAG repeat in the human androgen-receptor gene correlates with X chromosome inactivation
    • 1682906, 1281384
    • Allen RC, Zoghbi HY, Moseley AB, Rosenblatt HM, Belmont JW. Methylation of HpaII and HhaI sites near the polymorphic CAG repeat in the human androgen-receptor gene correlates with X chromosome inactivation. Am J Hum Genet 1992, 51:1229-1239. 1682906, 1281384.
    • (1992) Am J Hum Genet , vol.51 , pp. 1229-1239
    • Allen, R.C.1    Zoghbi, H.Y.2    Moseley, A.B.3    Rosenblatt, H.M.4    Belmont, J.W.5
  • 25
    • 38949090440 scopus 로고    scopus 로고
    • Large-scale population study of human cell lines indicates that dosage compensation is virtually complete
    • 10.1371/journal.pgen.0040009, 2213701, 18208332
    • Johnston CM, Lovell FL, Leongamornlert DA, Stranger BE, Dermitzakis ET, Ross MT. Large-scale population study of human cell lines indicates that dosage compensation is virtually complete. PLoS Genet 2008, 4:e9. 10.1371/journal.pgen.0040009, 2213701, 18208332.
    • (2008) PLoS Genet , vol.4
    • Johnston, C.M.1    Lovell, F.L.2    Leongamornlert, D.A.3    Stranger, B.E.4    Dermitzakis, E.T.5    Ross, M.T.6
  • 29
    • 79954499505 scopus 로고    scopus 로고
    • Comprehensive DNA methylation analysis of human peripheral blood leukocytes and lymphoblastoid cell lines
    • 10.4161/epi.6.4.14876, 3100768, 21304276
    • Sugawara H, Iwamoto K, Bundo M, Ueda J, Ishigooka J, Kato T. Comprehensive DNA methylation analysis of human peripheral blood leukocytes and lymphoblastoid cell lines. Epigenetics 2011, 6:508-515. 10.4161/epi.6.4.14876, 3100768, 21304276.
    • (2011) Epigenetics , vol.6 , pp. 508-515
    • Sugawara, H.1    Iwamoto, K.2    Bundo, M.3    Ueda, J.4    Ishigooka, J.5    Kato, T.6
  • 30
    • 0023188661 scopus 로고
    • High-frequency reactivation of X-linked genes in Chinese hamster X human hybrid cells
    • 10.1007/BF01535202, 2440116
    • Ellis N, Keitges E, Gartler SM, Rocchi M. High-frequency reactivation of X-linked genes in Chinese hamster X human hybrid cells. Somat Cell Mol Genet 1987, 13:191-204. 10.1007/BF01535202, 2440116.
    • (1987) Somat Cell Mol Genet , vol.13 , pp. 191-204
    • Ellis, N.1    Keitges, E.2    Gartler, S.M.3    Rocchi, M.4
  • 31
    • 70349579490 scopus 로고    scopus 로고
    • Expression differences by continent of origin point to the immortalization process
    • 10.1093/hmg/ddp330, 2748894, 19628477
    • Davis AR, Kohane IS. Expression differences by continent of origin point to the immortalization process. Hum Mol Genet 2009, 18:3864-3875. 10.1093/hmg/ddp330, 2748894, 19628477.
    • (2009) Hum Mol Genet , vol.18 , pp. 3864-3875
    • Davis, A.R.1    Kohane, I.S.2
  • 32
    • 0034640697 scopus 로고    scopus 로고
    • Female with autistic disorder and monosomy X (Turner syndrome): parent-of-origin effect of the X chromosome
    • 10.1002/1096-8628(20000612)96:3<312::AID-AJMG16>3.0.CO;2-8, 10898907
    • Donnelly SL, Wolpert CM, Menold MM, Bass MP, Gilbert JR, Cuccaro ML, Delong GR, Pericak-Vance MA. Female with autistic disorder and monosomy X (Turner syndrome): parent-of-origin effect of the X chromosome. Am J Med Genet 2000, 96:312-316. 10.1002/1096-8628(20000612)96:3<312::AID-AJMG16>3.0.CO;2-8, 10898907.
    • (2000) Am J Med Genet , vol.96 , pp. 312-316
    • Donnelly, S.L.1    Wolpert, C.M.2    Menold, M.M.3    Bass, M.P.4    Gilbert, J.R.5    Cuccaro, M.L.6    Delong, G.R.7    Pericak-Vance, M.A.8
  • 34
    • 84888036094 scopus 로고    scopus 로고
    • MAP7D2 is a brain expressing X-linked maternal imprinted gene in humans
    • Niida Y, Yachie A. MAP7D2 is a brain expressing X-linked maternal imprinted gene in humans. Nat Precedings 2011,
    • (2011) Nat Precedings
    • Niida, Y.1    Yachie, A.2
  • 35
    • 84864825655 scopus 로고    scopus 로고
    • Plac1 (placenta-specific 1) is essential for normal placental and embryonic development
    • 10.1002/mrd.22062, 22729990
    • Jackman SM, Kong X, Fant ME. Plac1 (placenta-specific 1) is essential for normal placental and embryonic development. Mol Reprod Dev 2012, 79:564-572. 10.1002/mrd.22062, 22729990.
    • (2012) Mol Reprod Dev , vol.79 , pp. 564-572
    • Jackman, S.M.1    Kong, X.2    Fant, M.E.3
  • 38
    • 0036081355 scopus 로고    scopus 로고
    • Gene expression omnibus: NCBI gene expression and hybridization array data repository
    • 10.1093/nar/30.1.207, 99122, 11752295
    • Edgar R, Domrachev M, Lash AE. Gene expression omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acid Res 2002, 30:207-210. 10.1093/nar/30.1.207, 99122, 11752295.
    • (2002) Nucleic Acid Res , vol.30 , pp. 207-210
    • Edgar, R.1    Domrachev, M.2    Lash, A.E.3


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