Benchmark datasets for phylogenomic pipeline validation, applications for foodborne pathogen surveillance

PeerJ

Volumn 2017, Issue 10, 2017, Pages

  Timme, Ruth E ^a   Rand, Hugh ^a   Shumway, Martin ^b   Trees, Eija K ^c   Simmons, Mustafa ^d   Agarwala, Richa ^b   Davis, Steven ^a   Tillman, Glenn E ^d   Defibaugh Chavez, Stephanie ^d   Carleton, Heather A ^c   Klimke, William A ^b   Katz, Lee S ^c,e  

^a CENTER FOR DRUG EVALUATION AND RESEARCH   (United States)

^b NATIONAL INSTITUTES OF HEALTH   (United States)

^c CENTERS FOR DISEASE CONTROL AND PREVENTION   (United States)

^d U S DEPARTMENT OF AGRICULTURE   (United States)

^e UNIVERSITY OF GEORGIA   (United States)

Author keywords

Benchmark datasets; E. coli; Food safety; Foodborne outbreak; Listeria; Phylogenomics; Salmonella; Validation; WGS

Indexed keywords

CAMPYLOBACTER JEJUNI; ESCHERICHIA COLI; FOOD SAFETY; INFECTIOUS AGENT; LISTERIA MONOCYTOGENES; METADATA; NONHUMAN; PHYLOGENETIC TREE; PHYLOGENOMICS; PIPELINE; PUBLIC HEALTH; SALMONELLA ENTERICA; SIMULATION; STANDARDIZATION; VALIDATION PROCESS;

EID: 85030703368     PISSN: None     EISSN: 21678359     Source Type: Journal    
DOI: 10.7717/peerj.3893     Document Type: Article

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