SNVPhyl: a single nucleotide variant phylogenomics pipeline for microbial genomic epidemiology

Microbial genomics

Volumn 3, Issue 6, 2017, Pages e000116-

  Petkau, Aaron ^a   Mabon, Philip ^a   Sieffert, Cameron ^a   Knox, Natalie C ^a   Cabral, Jennifer ^a   Iskander, Mariam ^b   Iskander, Mark ^b   Weedmark, Kelly ^c   Zaheer, Rahat ^d   Katz, Lee S ^e   Nadon, Celine ^a   Reimer, Aleisha ^a   Taboada, Eduardo ^a   Beiko, Robert G ^f   Hsiao, William ^g   Brinkman, Fiona ^h   Graham, Morag ^a   Van Domselaar, Gary ^a  

^a PUBLIC HEALTH AGENCY OF CANADA   (Canada)

^b UNIVERSITY OF MANITOBA   (Canada)

^c HEALTH CANADA   (Canada)

^d LETHBRIDGE RESEARCH CENTRE   (Canada)

^e CENTERS FOR DISEASE CONTROL AND PREVENTION   (United States)

^f DALHOUSIE UNIVERSITY   (Canada)

^g BCCDC Public Health Microbiology and Reference Laboratory   (Canada)

^h SIMON FRASER UNIVERSITY   (Canada)

Author keywords

bacterial genomics; bioinformatics; genomic epidemiology; infectious disease surveillance; phylogenomics; single nucleotide variation detection

Indexed keywords

BIOLOGY; EPIDEMIC; GENETICS; HUMAN; INFECTION; MICROBIAL GENOME; MICROBIOLOGY; PHYLOGENY; WHOLE GENOME SEQUENCING; WORKFLOW;

COMPUTATIONAL BIOLOGY; DISEASE OUTBREAKS; GENOME, MICROBIAL; HUMANS; INFECTION; PHYLOGENY; WHOLE GENOME SEQUENCING; WORKFLOW;

EID: 85030710749     PISSN: None     EISSN: 20575858     Source Type: Journal    
DOI: 10.1099/mgen.0.000116     Document Type: Article

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