-
1
-
-
84857039557
-
The intestinal microbiota in health and disease
-
Young, V.B., The intestinal microbiota in health and disease. Curr Opin Gastroenterol 28 (2012), 63–69.
-
(2012)
Curr Opin Gastroenterol
, vol.28
, pp. 63-69
-
-
Young, V.B.1
-
2
-
-
84873718952
-
Therapeutic modulation of intestinal dysbiosis
-
Walker, A.W., Lawley, T.D., Therapeutic modulation of intestinal dysbiosis. Pharmacol Res 69 (2013), 75–86.
-
(2013)
Pharmacol Res
, vol.69
, pp. 75-86
-
-
Walker, A.W.1
Lawley, T.D.2
-
3
-
-
84966560351
-
Microbiome therapeutics - Advances and challenges
-
Review that discusses current subtractive and additive approaches to manipulate the microbiota and the challenges encountered by the scientific community in the development of microbiome therapeutics. Highlights the importance of understanding the ecological principles for a rational design of effective microbial-based therapeutics.
-
Mimee, M., Citorik, R.J., Lu, T.K., Microbiome therapeutics - Advances and challenges. Adv Drug Deliv Rev, 2016, 10.1016/j.addr.2016.04.032 Review that discusses current subtractive and additive approaches to manipulate the microbiota and the challenges encountered by the scientific community in the development of microbiome therapeutics. Highlights the importance of understanding the ecological principles for a rational design of effective microbial-based therapeutics.
-
(2016)
Adv Drug Deliv Rev
-
-
Mimee, M.1
Citorik, R.J.2
Lu, T.K.3
-
4
-
-
85019614311
-
Next-generation probiotics: the spectrum from probiotics to live biotherapeutics
-
O'Toole, P.W., Marchesi, J.R., Hill, C., Next-generation probiotics: the spectrum from probiotics to live biotherapeutics. Nat Microbiol, 2, 2017, 17057.
-
(2017)
Nat Microbiol
, vol.2
, pp. 17057
-
-
O'Toole, P.W.1
Marchesi, J.R.2
Hill, C.3
-
5
-
-
84877249773
-
Medicines from microbiota
-
Olle, B., Medicines from microbiota. Nat Biotechnol 31 (2013), 309–315.
-
(2013)
Nat Biotechnol
, vol.31
, pp. 309-315
-
-
Olle, B.1
-
6
-
-
0032705905
-
Screening of probiotic activities of forty-seven strains of Lactobacillus spp. by in vitro techniques and evaluation of the colonization ability of five selected strains in humans
-
Jacobsen, C.N., Nielsen, V.R., Hayford, A.E., Møller, P.L., Michaelsen, K.F., Pærregaard, A., Sandström, B., Tvede, M., Jakobsen, M., Screening of probiotic activities of forty-seven strains of Lactobacillus spp. by in vitro techniques and evaluation of the colonization ability of five selected strains in humans. Appl Environ Microbiol 65 (1999), 4949–4956.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 4949-4956
-
-
Jacobsen, C.N.1
Nielsen, V.R.2
Hayford, A.E.3
Møller, P.L.4
Michaelsen, K.F.5
Pærregaard, A.6
Sandström, B.7
Tvede, M.8
Jakobsen, M.9
-
7
-
-
84968732849
-
Alterations in fecal microbiota composition by probiotic supplementation in healthy adults: a systematic review of randomized controlled trials
-
Kristensen, N.B., Bryrup, T., Allin, K.H., Nielsen, T., Hansen, T.H., Pedersen, O., Alterations in fecal microbiota composition by probiotic supplementation in healthy adults: a systematic review of randomized controlled trials. Genome Med, 2016, 10.1186/s13073-016-0300-5.
-
(2016)
Genome Med
-
-
Kristensen, N.B.1
Bryrup, T.2
Allin, K.H.3
Nielsen, T.4
Hansen, T.H.5
Pedersen, O.6
-
8
-
-
84968880438
-
Durable coexistence of donor and recipient strains after fecal microbiota transplantation
-
This study provides in detail insight into the impact of FMT on the recipient microbiome in individual suffering from metabolic syndrome by using a metagenomic analysis with strain level resolution.
-
Li, S.S., Zhu, A., Benes, V., Costea, P.I., Hercog, R., Hildebrand, F., Huerta-Cepas, J., Nieuwdorp, M., Salojärvi, J., Voigt, A.Y., et al. Durable coexistence of donor and recipient strains after fecal microbiota transplantation. Science 352 (2016), 586–589 This study provides in detail insight into the impact of FMT on the recipient microbiome in individual suffering from metabolic syndrome by using a metagenomic analysis with strain level resolution.
-
(2016)
Science
, vol.352
, pp. 586-589
-
-
Li, S.S.1
Zhu, A.2
Benes, V.3
Costea, P.I.4
Hercog, R.5
Hildebrand, F.6
Huerta-Cepas, J.7
Nieuwdorp, M.8
Salojärvi, J.9
Voigt, A.Y.10
-
9
-
-
85016009015
-
Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study
-
Kang, D., Adams, J.B., Gregory, A.C., Borody, T., Chittick, L., Fasano, A., Khoruts, A., Geis, E., Maldonado, J., Mcdonough-means, S., et al. Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study. Microbiome 5 (2017), 1–16.
-
(2017)
Microbiome
, vol.5
, pp. 1-16
-
-
Kang, D.1
Adams, J.B.2
Gregory, A.C.3
Borody, T.4
Chittick, L.5
Fasano, A.6
Khoruts, A.7
Geis, E.8
Maldonado, J.9
Mcdonough-means, S.10
-
10
-
-
80051856839
-
The human gut microbiome: ecology and recent evolutionary changes
-
Walter, J., Ley, R., The human gut microbiome: ecology and recent evolutionary changes. Annu Rev Microbiol 65 (2011), 411–429.
-
(2011)
Annu Rev Microbiol
, vol.65
, pp. 411-429
-
-
Walter, J.1
Ley, R.2
-
11
-
-
84861992014
-
The application of ecological theory toward an understanding of the human microbiome
-
Costello, E.K., Stagaman, K., Dethlefsen, L., Bohannan, B.J.M., Relman, D.a, The application of ecological theory toward an understanding of the human microbiome. Science 336 (2012), 1255–1262.
-
(2012)
Science
, vol.336
, pp. 1255-1262
-
-
Costello, E.K.1
Stagaman, K.2
Dethlefsen, L.3
Bohannan, B.J.M.4
Relman, D.A.5
-
12
-
-
57349187789
-
Reducing redundancy in invasion ecology by integrating hypotheses into a single theoretical framework
-
Catford, J.A., Jansson, R., Nilsson, C., Reducing redundancy in invasion ecology by integrating hypotheses into a single theoretical framework. Divers Distrib 15 (2009), 22–40.
-
(2009)
Divers Distrib
, vol.15
, pp. 22-40
-
-
Catford, J.A.1
Jansson, R.2
Nilsson, C.3
-
13
-
-
84960388975
-
Microbial invasions: the process, patterns, and mechanisms
-
Excellent review applying the concepts of invasion ecology to microbial ecosystem.
-
Mallon, C.A., Elsas, J.D.van, Salles, J.F., Microbial invasions: the process, patterns, and mechanisms. Trends Microbiol 23 (2015), 719–729 Excellent review applying the concepts of invasion ecology to microbial ecosystem.
-
(2015)
Trends Microbiol
, vol.23
, pp. 719-729
-
-
Mallon, C.A.1
Elsas, J.D.2
Salles, J.F.3
-
14
-
-
0042734269
-
Ecological niches: Linking classical and contemporary approaches
-
The University of Chicago Press
-
Chase, J.M., Leibold, M.A., Ecological niches: Linking classical and contemporary approaches. 2003, The University of Chicago Press.
-
(2003)
-
-
Chase, J.M.1
Leibold, M.A.2
-
15
-
-
85027975033
-
Lifestyles in transition: evolution and natural history of the genus Lactobacillus
-
Duar, R.M., Lin, X.B., Zheng, J., Martino, M.E., Grenier, T., Pérez-Muñoz, M.E., Leulier, F., Gänzle, M., Walter, J., Lifestyles in transition: evolution and natural history of the genus Lactobacillus. FEMS Microbiol Rev, 2017, 10.1093/femsre/fux030.
-
(2017)
FEMS Microbiol Rev
-
-
Duar, R.M.1
Lin, X.B.2
Zheng, J.3
Martino, M.E.4
Grenier, T.5
Pérez-Muñoz, M.E.6
Leulier, F.7
Gänzle, M.8
Walter, J.9
-
16
-
-
50049098340
-
Ecological role of lactobacilli in the gastrointestinal tract: Implications for fundamental and biomedical research
-
Walter, J., Ecological role of lactobacilli in the gastrointestinal tract: Implications for fundamental and biomedical research. Appl Environ Microbiol 74 (2008), 4985–4996.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 4985-4996
-
-
Walter, J.1
-
17
-
-
84880302477
-
Genus I. Bifidobacterium
-
W. Whitman M. Goodfellow P. Kämpfer H.-J. Busse M. Trujillo W. Ludwig K. Suzuki Springer New York
-
Biavati, B., Mattarelli, P., Genus I. Bifidobacterium. Whitman, W., Goodfellow, M., Kämpfer, P., Busse, H.-J., Trujillo, M., Ludwig, W., Suzuki, K., (eds.) In Bergey's Manual of Systematic Bacteriology. Volume 5: The Actinobacteria, 2012, Springer, New York, 171–206.
-
(2012)
In Bergey's Manual of Systematic Bacteriology. Volume 5: The Actinobacteria
, pp. 171-206
-
-
Biavati, B.1
Mattarelli, P.2
-
18
-
-
84871732071
-
Genomic variation landscape of the human gut microbiome
-
Schloissnig, S., Arumugam, M., Sunagawa, S., Mitreva, M., Tap, J., Zhu, A., Waller, A., Mende, D.R., Kultima, J.R., Martin, J., et al. Genomic variation landscape of the human gut microbiome. Nature 493 (2013), 45–50.
-
(2013)
Nature
, vol.493
, pp. 45-50
-
-
Schloissnig, S.1
Arumugam, M.2
Sunagawa, S.3
Mitreva, M.4
Tap, J.5
Zhu, A.6
Waller, A.7
Mende, D.R.8
Kultima, J.R.9
Martin, J.10
-
19
-
-
84992363298
-
Stable engraftment of Bifidobacterium longum AH1206 in the human gut depends on individualized features of the resident microbiome
-
First study to show a stable engraftment of a probiotic strain for over 6 months in a subset of human subjects using methods that allow resolution at strain level. Using a metagenomic approach, the study further identified differences in microbiome of persisters and non-persisters to be related to researches that provide a niche opportunity for the strain.
-
Maldonado-Gomez, M.X., Martinez, I., Bottacini, F., O'Callaghan, A., Ventura, M., van Sinderen, D., Hillmann, B., Vangay, P., Knights, D., Hutkins, R.W., et al. Stable engraftment of Bifidobacterium longum AH1206 in the human gut depends on individualized features of the resident microbiome. Cell Host Microbe 20 (2016), 515–526 First study to show a stable engraftment of a probiotic strain for over 6 months in a subset of human subjects using methods that allow resolution at strain level. Using a metagenomic approach, the study further identified differences in microbiome of persisters and non-persisters to be related to researches that provide a niche opportunity for the strain.
-
(2016)
Cell Host Microbe
, vol.20
, pp. 515-526
-
-
Maldonado-Gomez, M.X.1
Martinez, I.2
Bottacini, F.3
O'Callaghan, A.4
Ventura, M.5
van Sinderen, D.6
Hillmann, B.7
Vangay, P.8
Knights, D.9
Hutkins, R.W.10
-
20
-
-
0017341656
-
Microbial ecology of the gastrointestinal tract
-
Savage, D.C., Microbial ecology of the gastrointestinal tract. Annu Rev Microbiol 31 (1977), 107–133.
-
(1977)
Annu Rev Microbiol
, vol.31
, pp. 107-133
-
-
Savage, D.C.1
-
21
-
-
84979609905
-
Cospeciation of gut microbiota with hominids
-
Moeller, A.H., Caro-quintero, A., Mjungu, D., Georgiev, A.V., Lonsdorf, E.V., Muller, M.N., Pusey, A.E., Peeters, M., Beatrice, H., Cospeciation of gut microbiota with hominids. Science 353 (2017), 380–382.
-
(2017)
Science
, vol.353
, pp. 380-382
-
-
Moeller, A.H.1
Caro-quintero, A.2
Mjungu, D.3
Georgiev, A.V.4
Lonsdorf, E.V.5
Muller, M.N.6
Pusey, A.E.7
Peeters, M.8
Beatrice, H.9
-
22
-
-
84947999013
-
Colonization of C57BL/6 mice by a potential probiotic Bifidobacterium bifidum strain under germ-free and specific pathogen-free conditions and during experimental colitis
-
Grimm, V., Radulovic, K., Riedel, C.U., Colonization of C57BL/6 mice by a potential probiotic Bifidobacterium bifidum strain under germ-free and specific pathogen-free conditions and during experimental colitis. PLoS One 10 (2015), 1–14.
-
(2015)
PLoS One
, vol.10
, pp. 1-14
-
-
Grimm, V.1
Radulovic, K.2
Riedel, C.U.3
-
23
-
-
79952266302
-
The evolution of host specialization in the vertebrate gut symbiont Lactobacillus reuteri
-
Frese, S.A., Benson, A.K., Tannock, G.W., Loach, D.M., Kim, J., Oh, P.L., Heng, N.C.K., Patil, P.B., Juge, N., Mackenzie, D.A., et al. The evolution of host specialization in the vertebrate gut symbiont Lactobacillus reuteri. PLoS Genet, 7, 2011.
-
(2011)
PLoS Genet
, vol.7
-
-
Frese, S.A.1
Benson, A.K.2
Tannock, G.W.3
Loach, D.M.4
Kim, J.5
Oh, P.L.6
Heng, N.C.K.7
Patil, P.B.8
Juge, N.9
Mackenzie, D.A.10
-
24
-
-
84892690253
-
Molecular characterization of host-specific biofilm formation in a vertebrate gut symbiont
-
Frese, S.A., Mackenzie, D.A., Peterson, D.A., Schmaltz, R., Fangman, T., Zhou, Y., Zhang, C., Benson, A.K., Cody, L.A., Mulholland, F., et al. Molecular characterization of host-specific biofilm formation in a vertebrate gut symbiont. PLoS Genet, 9, 2013.
-
(2013)
PLoS Genet
, vol.9
-
-
Frese, S.A.1
Mackenzie, D.A.2
Peterson, D.A.3
Schmaltz, R.4
Fangman, T.5
Zhou, Y.6
Zhang, C.7
Benson, A.K.8
Cody, L.A.9
Mulholland, F.10
-
25
-
-
84977667775
-
Characterization of the ecological role of genes mediating acid resistance in Lactobacillus reuteri during colonization of the gastrointestinal tract
-
Krumbeck, J.A., Marsteller, N.L., Frese, S.A., Peterson, D.A., Ramer-tait, A.E., Hutkins, R.W., Walter, J., Characterization of the ecological role of genes mediating acid resistance in Lactobacillus reuteri during colonization of the gastrointestinal tract. Environ Microbiol 18 (2016), 2172–2184.
-
(2016)
Environ Microbiol
, vol.18
, pp. 2172-2184
-
-
Krumbeck, J.A.1
Marsteller, N.L.2
Frese, S.A.3
Peterson, D.A.4
Ramer-tait, A.E.5
Hutkins, R.W.6
Walter, J.7
-
26
-
-
84871860604
-
Movers and shakers: influence of bacteriophages in shaping the mammalian gut microbiota
-
Mills, S., Shanahan, F., Stanton, C., Hill, C., Coffey, A., Ross, R.P., Mills, S., Shanahan, F., Stanton, C., Hill, C., et al. Movers and shakers: influence of bacteriophages in shaping the mammalian gut microbiota. Gut Microbes 4 (2013), 4–16.
-
(2013)
Gut Microbes
, vol.4
, pp. 4-16
-
-
Mills, S.1
Shanahan, F.2
Stanton, C.3
Hill, C.4
Coffey, A.5
Ross, R.P.6
Mills, S.7
Shanahan, F.8
Stanton, C.9
Hill, C.10
-
27
-
-
85026308810
-
Bacteriophage transfer during faecal microbiota transplantation in Clostridium difficile infection is associated with treatment outcome
-
[Epub ahead of print] Elegant study that suggests that bacteriophages might be responsible for some of the effects of FMTs.
-
Zuo, T., Wong, S.H., Lam, K., Lui, R., Cheung, K., Tang, W., Ching, J.Y.L., Chan, P.K.S., Chan, M.C.W., Wu, J.C.Y., et al. Bacteriophage transfer during faecal microbiota transplantation in Clostridium difficile infection is associated with treatment outcome. Gut, 2017, 10.1136/gutjnl-2017-313952 [Epub ahead of print] Elegant study that suggests that bacteriophages might be responsible for some of the effects of FMTs.
-
(2017)
Gut
-
-
Zuo, T.1
Wong, S.H.2
Lam, K.3
Lui, R.4
Cheung, K.5
Tang, W.6
Ching, J.Y.L.7
Chan, P.K.S.8
Chan, M.C.W.9
Wu, J.C.Y.10
-
28
-
-
77649209317
-
Like will to like: abundances of closely related species can predict susceptibility to intestinal colonization by pathogenic and commensal bacteria
-
Stecher, B., Chaffron, S., Käppeli, R., Hapfelmeier, S., Freedrich, S., Weber, T.C., Kirundi, J., Suar, M., McCoy, K.D., von Mering, C., et al. Like will to like: abundances of closely related species can predict susceptibility to intestinal colonization by pathogenic and commensal bacteria. PLoS Pathog, 6, 2010, e1000711.
-
(2010)
PLoS Pathog
, vol.6
, pp. e1000711
-
-
Stecher, B.1
Chaffron, S.2
Käppeli, R.3
Hapfelmeier, S.4
Freedrich, S.5
Weber, T.C.6
Kirundi, J.7
Suar, M.8
McCoy, K.D.9
von Mering, C.10
-
29
-
-
84870266477
-
The evolution of mutualism in gut microbiota via host epithelial selection
-
Schluter, J., Foster, K.R., The evolution of mutualism in gut microbiota via host epithelial selection. PLoS Biol, 10, 2012, e1001424.
-
(2012)
PLoS Biol
, vol.10
, pp. e1001424
-
-
Schluter, J.1
Foster, K.R.2
-
30
-
-
0036531879
-
Community ecology theory as a framework for biological invasions
-
Shea, K., Chesson, P., Community ecology theory as a framework for biological invasions. Tree 17 (2002), 170–176.
-
(2002)
Tree
, vol.17
, pp. 170-176
-
-
Shea, K.1
Chesson, P.2
-
31
-
-
84905027614
-
Reset of a critically disturbed microbial ecosystem: faecal transplant in recurrent Clostridium difficile infection
-
Fuentes, S., Nood, E., Van, Tims, S., Jong, I.H., Jf, C., Keller, J.J., Zoetendal, E.G., Vos, W.M.De, Reset of a critically disturbed microbial ecosystem: faecal transplant in recurrent Clostridium difficile infection. ISME J 8 (2014), 1621–1633.
-
(2014)
ISME J
, vol.8
, pp. 1621-1633
-
-
Fuentes, S.1
Nood, E.2
Van3
Tims, S.4
Jong, I.H.5
Jf, C.6
Keller, J.J.7
Zoetendal, E.G.8
Vos, W.M.D.9
-
32
-
-
0034503114
-
Mechanisims of maintenance of species diversity
-
Chesson, P., Mechanisims of maintenance of species diversity. Annu Rev Ecol Syst 31 (2000), 343–366.
-
(2000)
Annu Rev Ecol Syst
, vol.31
, pp. 343-366
-
-
Chesson, P.1
-
33
-
-
0003892628
-
The Origin of Species, by Charles Darwin, A variorum text
-
University of Pennsylvania Press
-
Darwin, C., The Origin of Species, by Charles Darwin, A variorum text. 1859, University of Pennsylvania Press.
-
(1859)
-
-
Darwin, C.1
-
34
-
-
77955960939
-
Opposing effects of competitive exclusion on the phylogenetic structure of communities
-
Mayfield, M.M., Levine, J.M., Opposing effects of competitive exclusion on the phylogenetic structure of communities. Ecol Lett 13 (2010), 1085–1093.
-
(2010)
Ecol Lett
, vol.13
, pp. 1085-1093
-
-
Mayfield, M.M.1
Levine, J.M.2
-
35
-
-
0035843993
-
Commensal host-bacterial relationships in the gut
-
Hooper, L.V., Gordon, J.I., Commensal host-bacterial relationships in the gut. Science 292 (2001), 1115–1119.
-
(2001)
Science
, vol.292
, pp. 1115-1119
-
-
Hooper, L.V.1
Gordon, J.I.2
-
36
-
-
66349134056
-
The merging of community ecology and phylogenetic biology
-
Cavender-Bares, J., Kozak, K.H., Fine, P.V.A., Kembel, S.W., The merging of community ecology and phylogenetic biology. Ecol Lett 12 (2009), 693–715.
-
(2009)
Ecol Lett
, vol.12
, pp. 693-715
-
-
Cavender-Bares, J.1
Kozak, K.H.2
Fine, P.V.A.3
Kembel, S.W.4
-
37
-
-
84931573729
-
Historical contingency in community assembly: integrating niches, species pools, and priority effects
-
Fukami, T., Historical contingency in community assembly: integrating niches, species pools, and priority effects. Annu Rev Ecol Evol Syst 46 (2015), 1–23.
-
(2015)
Annu Rev Ecol Evol Syst
, vol.46
, pp. 1-23
-
-
Fukami, T.1
-
38
-
-
84954306210
-
Evolving perspectives on monopolization and priority effects
-
De Meester, L., Vanoverbeke, J., Kilsdonk, L.J., Urban, M.C., Evolving perspectives on monopolization and priority effects. Trends Ecol Evol 31 (2016), 136–146.
-
(2016)
Trends Ecol Evol
, vol.31
, pp. 136-146
-
-
De Meester, L.1
Vanoverbeke, J.2
Kilsdonk, L.J.3
Urban, M.C.4
-
39
-
-
85028691578
-
Stable engraftment of human microbiota into mice with a single oral gavage following antibiotic conditioning
-
Staley, C., Kaiser, T., Beura, L.K., Hamilton, M.J., Weingarden, A.R., Bobr, A., Kang, J., Masopust, D., Sadowsky, M.J., Khoruts, A., Stable engraftment of human microbiota into mice with a single oral gavage following antibiotic conditioning. Microbiome, 5, 2017, 87.
-
(2017)
Microbiome
, vol.5
, pp. 87
-
-
Staley, C.1
Kaiser, T.2
Beura, L.K.3
Hamilton, M.J.4
Weingarden, A.R.5
Bobr, A.6
Kang, J.7
Masopust, D.8
Sadowsky, M.J.9
Khoruts, A.10
-
40
-
-
84930929369
-
Fate, activity, and impact of ingested bacteria within the human gut microbiota
-
Derrien, M., van Hylckama Vlieg, J.E.T., Fate, activity, and impact of ingested bacteria within the human gut microbiota. Trends Microbiol 23 (2015), 354–366.
-
(2015)
Trends Microbiol
, vol.23
, pp. 354-366
-
-
Derrien, M.1
van Hylckama Vlieg, J.E.T.2
-
41
-
-
84901697387
-
454 pyrosequencing reveals changes in the faecal microbiota of adults consuming Lactobacillus casei Zhang
-
Zhang, J., Wang, L., Guo, Z., Sun, Z., Gesudu, Q., Kwok, L., Zhang, H., 454 pyrosequencing reveals changes in the faecal microbiota of adults consuming Lactobacillus casei Zhang. FEMS Microbiol Ecol 88 (2014), 612–622.
-
(2014)
FEMS Microbiol Ecol
, vol.88
, pp. 612-622
-
-
Zhang, J.1
Wang, L.2
Guo, Z.3
Sun, Z.4
Gesudu, Q.5
Kwok, L.6
Zhang, H.7
-
42
-
-
80054960299
-
The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins
-
McNulty, N.P., Yatsunenko, T., Hsiao, A., Faith, J.J., Muegge, B.D., Goodman, A.L., Henrissat, B., Oozeer, R., Cools-, S., Gobert, G., et al. The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins. Sci Transl Med 3 (2012), 1–26.
-
(2012)
Sci Transl Med
, vol.3
, pp. 1-26
-
-
McNulty, N.P.1
Yatsunenko, T.2
Hsiao, A.3
Faith, J.J.4
Muegge, B.D.5
Goodman, A.L.6
Henrissat, B.7
Oozeer, R.8
Cools-, S.9
Gobert, G.10
-
43
-
-
84877116806
-
Associations between the human intestinal microbiota, Lactobacillus rhamnosus GG and serum lipids indicated by integrated analysis of high-throughput profiling data
-
Lahti, L., Salonen, A., Kekkonen, R.A., Associations between the human intestinal microbiota, Lactobacillus rhamnosus GG and serum lipids indicated by integrated analysis of high-throughput profiling data. PeerJ, 1, 2013, e32.
-
(2013)
PeerJ
, vol.1
, pp. e32
-
-
Lahti, L.1
Salonen, A.2
Kekkonen, R.A.3
-
44
-
-
84870999292
-
Intestinal colonization resistance
-
Lawley, T.D., Walker, A.W., Intestinal colonization resistance. Immunology 138 (2013), 1–11.
-
(2013)
Immunology
, vol.138
, pp. 1-11
-
-
Lawley, T.D.1
Walker, A.W.2
-
45
-
-
85024111274
-
Food and microbiota in the FDA regulatory framework
-
Green, B.J.M., Barratt, M.J., Kinch, M., Gordon, J.I., Food and microbiota in the FDA regulatory framework. Science 357 (2017), 39–40.
-
(2017)
Science
, vol.357
, pp. 39-40
-
-
Green, B.J.M.1
Barratt, M.J.2
Kinch, M.3
Gordon, J.I.4
-
46
-
-
84960153678
-
Ecological robustness of the gut microbiota in response to ingestion of transient food-borne microbes
-
Zhang, C., Derrien, M., Levenez, F., Brazeilles, R., Ballal, S.A., Kim, J., Degivry, M., Quéré, G., Garault, P., van Hylckama Vlieg, J.E.T., et al. Ecological robustness of the gut microbiota in response to ingestion of transient food-borne microbes. ISME J 10 (2016), 2235–2245.
-
(2016)
ISME J
, vol.10
, pp. 2235-2245
-
-
Zhang, C.1
Derrien, M.2
Levenez, F.3
Brazeilles, R.4
Ballal, S.A.5
Kim, J.6
Degivry, M.7
Quéré, G.8
Garault, P.9
van Hylckama Vlieg, J.E.T.10
-
47
-
-
12244284628
-
Scarce evidence of yogurt lactic acid bacteria in human feces after daily yogurt consumption by healthy volunteers
-
Del Campo, R., Bravo, D., Canto, R., Ruiz-garbajosa, P., Garcı, R., Montesi-libois, A., Yuste, F., Abraira, V., Baquero, F., Scarce evidence of yogurt lactic acid bacteria in human feces after daily yogurt consumption by healthy volunteers. Appl Environ Microbiol 71 (2005), 547–549.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 547-549
-
-
Del Campo, R.1
Bravo, D.2
Canto, R.3
Ruiz-garbajosa, P.4
Garcı, R.5
Montesi-libois, A.6
Yuste, F.7
Abraira, V.8
Baquero, F.9
-
48
-
-
50049098340
-
Ecological role of lactobacilli in the gastrointestinal tract: implications for fundamental and biomedical research
-
Walter, J., Ecological role of lactobacilli in the gastrointestinal tract: implications for fundamental and biomedical research. Appl Environ Microbiol 74 (2008), 4985–4996.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 4985-4996
-
-
Walter, J.1
-
49
-
-
0035122156
-
Intestinal transit of an orally administered streptomycin-rifampicin-resistant variant of Bifidobacterium longum SBT2928: its long-term survival and effect on the intestinal microflora and metabolism
-
Fujiwara, S., Seto, Y., Kimura, A., Hashiba, H., Intestinal transit of an orally administered streptomycin-rifampicin-resistant variant of Bifidobacterium longum SBT2928: its long-term survival and effect on the intestinal microflora and metabolism. J Appl Microbiol 90 (2001), 43–52.
-
(2001)
J Appl Microbiol
, vol.90
, pp. 43-52
-
-
Fujiwara, S.1
Seto, Y.2
Kimura, A.3
Hashiba, H.4
-
50
-
-
85019987878
-
Experimental evaluation of host adaptation of Lactobacillus reuteri to different vertebrate species
-
Duar, R.M., Frese, S.A., Lin, X.B., Fernando, S.C., Burkey, T.E., Tasseva, G., Peterson, D.A., Blom, J., Wenzel, C.Q., Szymanski, C.M., et al. Experimental evaluation of host adaptation of Lactobacillus reuteri to different vertebrate species. Appl Environ Microbiol, 2017, 83.
-
(2017)
Appl Environ Microbiol
, pp. 83
-
-
Duar, R.M.1
Frese, S.A.2
Lin, X.B.3
Fernando, S.C.4
Burkey, T.E.5
Tasseva, G.6
Peterson, D.A.7
Blom, J.8
Wenzel, C.Q.9
Szymanski, C.M.10
-
51
-
-
84866146940
-
Diversity, stability and resilience of the human gut microbiota
-
Lozupone, C.a., Stombaugh, J.I., Gordon, J.I., Jansson, J.K., Knight, R., Diversity, stability and resilience of the human gut microbiota. Nature 489 (2012), 220–230.
-
(2012)
Nature
, vol.489
, pp. 220-230
-
-
Lozupone, C.A.1
Stombaugh, J.I.2
Gordon, J.I.3
Jansson, J.K.4
Knight, R.5
-
52
-
-
0034076597
-
Analysis of intestinal flora development in breast-fed and formula-fed infants by using molecular identification and detection methods
-
Harmsen, H., Wildeboer-Veloo, A., Raangs, G., Wagendorp, A., Klijn, N., Bindels, J., Welling, G., Analysis of intestinal flora development in breast-fed and formula-fed infants by using molecular identification and detection methods. Pediatr Gastroenterol Nutr 30 (2000), 61–67.
-
(2000)
Pediatr Gastroenterol Nutr
, vol.30
, pp. 61-67
-
-
Harmsen, H.1
Wildeboer-Veloo, A.2
Raangs, G.3
Wagendorp, A.4
Klijn, N.5
Bindels, J.6
Welling, G.7
-
53
-
-
85028692075
-
A comparison of two probiotic strains of bifidobacteria in premature infants
-
Underwood, M.A., Kalanetra, K.M., Bokulich, N.A., Lewis, Z.T., Mirmiran, M., Tancredi, D.J., Mills, D.A., A comparison of two probiotic strains of bifidobacteria in premature infants. J Pediatr, 2015, 163.
-
(2015)
J Pediatr
, pp. 163
-
-
Underwood, M.A.1
Kalanetra, K.M.2
Bokulich, N.A.3
Lewis, Z.T.4
Mirmiran, M.5
Tancredi, D.J.6
Mills, D.A.7
-
54
-
-
84925372749
-
Introducing the concept of In Vivo Selection to identify bacterial stains with enhanced ecological performance when used in synbiotic applications
-
Krumbeck, J.A., Maldonado-Gomez, M.X., Martínez, I., Frese, S.A., Burkey, T.E., Rasineni, K., Ramer-Tait, A.E., Harris, E.N., Hutkins, R.W., Walter, J., Introducing the concept of In Vivo Selection to identify bacterial stains with enhanced ecological performance when used in synbiotic applications. Appl Environ Microbiol 81 (2015), 2455–2465.
-
(2015)
Appl Environ Microbiol
, vol.81
, pp. 2455-2465
-
-
Krumbeck, J.A.1
Maldonado-Gomez, M.X.2
Martínez, I.3
Frese, S.A.4
Burkey, T.E.5
Rasineni, K.6
Ramer-Tait, A.E.7
Harris, E.N.8
Hutkins, R.W.9
Walter, J.10
-
55
-
-
84884411052
-
Bacterial colonization factors control specificity and stability of the gut microbiota
-
Lee, S.M., Donaldson, G.P., Mikulski, Z., Boyajian, S., Ley, K., Mazmanian, S.K., Bacterial colonization factors control specificity and stability of the gut microbiota. Nature 501 (2013), 426–429.
-
(2013)
Nature
, vol.501
, pp. 426-429
-
-
Lee, S.M.1
Donaldson, G.P.2
Mikulski, Z.3
Boyajian, S.4
Ley, K.5
Mazmanian, S.K.6
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