-
1
-
-
18744382506
-
ProtTest: Selection of best-fit models of protein evolution
-
Abascal F, Zardoya R, Posada D. 2005. ProtTest: selection of best-fit models of protein evolution. Bioinformatics 21:2104-2105.
-
(2005)
Bioinformatics
, vol.21
, pp. 2104-2105
-
-
Abascal, F.1
Zardoya, R.2
Posada, D.3
-
2
-
-
24944435061
-
Diversity of type i polyketide synthase genes in the wood-decay fungus Xylaria sp. BCC1067
-
Amnuaykanjanasin A, Punya J, Paungmoung P, Rungrod A, Tachaleat A, Pongpattanakitshote S, Cheevadhanarak S, Tanticharoen M. 2005. Diversity of type I polyketide synthase genes in the wood-decay fungus Xylaria sp. BCC 1067. FEMS Microbiol Lett. 251:125-136.
-
(2005)
FEMS Microbiol Lett.
, vol.251
, pp. 125-136
-
-
Amnuaykanjanasin, A.1
Punya, J.2
Paungmoung, P.3
Rungrod, A.4
Tachaleat, A.5
Pongpattanakitshote, S.6
Cheevadhanarak, S.7
Tanticharoen, M.8
-
3
-
-
33846839390
-
Bayesian estimation of concordance among gene trees
-
Ané C, Larget B, BaumDA, Smith SD, Rokas A. 2007. Bayesian estimation of concordance among gene trees.Mol Biol Evol. 24:412-426.
-
(2007)
Mol Biol Evol.
, vol.24
, pp. 412-426
-
-
Ané, C.1
Larget, B.2
Baum, D.A.3
Smith, S.D.4
Rokas, A.5
-
4
-
-
0036691495
-
Characterization of inhibitor-resistant histone deacetylase activity in plant-pathogenic fungi
-
Baidyaroy D, Brosch G, Graessle S, Trojer P, Walton JD. 2002. Characterization of inhibitor-resistant histone deacetylase activity in plant-pathogenic fungi. Eukaryot Cell. 1:538-547.
-
(2002)
Eukaryot Cell.
, vol.1
, pp. 538-547
-
-
Baidyaroy, D.1
Brosch, G.2
Graessle, S.3
Trojer, P.4
Walton, J.D.5
-
5
-
-
34248545008
-
Multilocus sequence typing of the pathogenic fungus Aspergillus fumigatus
-
Bain JM, Tavanti A, Davidson AD, Jacobsen MD, Shaw D, Gow NA, Odds FC. 2007. Multilocus sequence typing of the pathogenic fungus Aspergillus fumigatus. J Clin Microbiol. 45:1469-1477.
-
(2007)
J Clin Microbiol.
, vol.45
, pp. 1469-1477
-
-
Bain, J.M.1
Tavanti, A.2
Davidson, A.D.3
Jacobsen, M.D.4
Shaw, D.5
Gow, N.A.6
Odds, F.C.7
-
6
-
-
0032912472
-
Identification and characterization of a gene cluster for synthesis of the polyketide antibiotic 2,4-diacetylphloroglucinol from Pseudomonas fluorescens Q2-87
-
Bangera MG, Thomashow LS. 1999. Identification and characterization of a gene cluster for synthesis of the polyketide antibiotic 2,4-diacetylphloroglucinol from Pseudomonas fluorescens Q2-87. J Bacteriol. 181:3155-3163.
-
(1999)
J Bacteriol.
, vol.181
, pp. 3155-3163
-
-
Bangera, M.G.1
Thomashow, L.S.2
-
7
-
-
84923167033
-
Identification of a 12-gene fusaric acid biosynthetic gene cluster in Fusarium species through comparative and functional genomics
-
Brown DW, Lee SH, Kim LH, Ryu JG, Lee S, Seo Y, Kim YH, Busman M, Yun SH, Proctor RH, et al. 2015. Identification of a 12-gene fusaric acid biosynthetic gene cluster in Fusarium species through comparative and functional genomics. Mol Plant-Microbe Interact. 28:319-332.
-
(2015)
Mol Plant-Microbe Interact.
, vol.28
, pp. 319-332
-
-
Brown, D.W.1
Lee, S.H.2
Kim, L.H.3
Ryu, J.G.4
Lee, S.5
Seo, Y.6
Kim, Y.H.7
Busman, M.8
Yun, S.H.9
Proctor, R.H.10
-
8
-
-
0029912229
-
Twenty-five co-regulated transcripts define a sterigmatocystin gene cluster in Aspergillus nidulans
-
Brown DW, Yu J-H, Kelkar HS, Fernandes M, Nesbitt TC, Keller NP, Adams TH, Leonard TJ. 1996. Twenty-five co-regulated transcripts define a sterigmatocystin gene cluster in Aspergillus nidulans. Proc Nat Acad Sci U S A. 93:1418-1422.
-
(1996)
Proc Nat Acad Sci U S A.
, vol.93
, pp. 1418-1422
-
-
Brown, D.W.1
Yu, J.-H.2
Kelkar, H.S.3
Fernandes, M.4
Nesbitt, T.C.5
Keller, N.P.6
Adams, T.H.7
Leonard, T.J.8
-
9
-
-
84863204810
-
Horizontal transfer and death of a fungal secondary metabolic gene cluster
-
Campbell MA, Rokas A, Slot JC. 2012. Horizontal transfer and death of a fungal secondary metabolic gene cluster. Genome Biol Evol. 4:289-293.
-
(2012)
Genome Biol Evol.
, vol.4
, pp. 289-293
-
-
Campbell, M.A.1
Rokas, A.2
Slot, J.C.3
-
10
-
-
84884932088
-
Repeated loss of an anciently horizontally transferred gene cluster in Botrytis
-
Campbell MA, StaatsM, van Kan JA, Rokas A, Slot JC. 2013. Repeated loss of an anciently horizontally transferred gene cluster in Botrytis. Mycologia 105:1126-1134.
-
(2013)
Mycologia
, vol.105
, pp. 1126-1134
-
-
Campbell, M.A.1
Staats, M.2
Van Kan, J.A.3
Rokas, A.4
Slot, J.C.5
-
11
-
-
67650757433
-
TrimAl: A tool for automated alignment trimming in large-scale phylogenetic analyses
-
Capella-Gutierrez S, Silla-Martinez JM, Gabaldon T. 2009. trimAl: A tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics 25:1972-1973.
-
(2009)
Bioinformatics
, vol.25
, pp. 1972-1973
-
-
Capella-Gutierrez, S.1
Silla-Martinez, J.M.2
Gabaldon, T.3
-
12
-
-
0141580423
-
Split-marker recombination for efficient targeted deletion of fungal genes
-
Catlett NL, Lee BN, Yoder OC, Turgeon BG. 2002. Split-marker recombination for efficient targeted deletion of fungal genes. Fun Genet News. 49:9-11.
-
(2002)
Fun Genet News.
, vol.49
, pp. 9-11
-
-
Catlett, N.L.1
Lee, B.N.2
Yoder, O.C.3
Turgeon, B.G.4
-
13
-
-
0345492332
-
Synergy and contingency as driving forces for the evolution of multiple secondary metabolite production by Streptomyces species
-
Challis GL, Hopwood DA. 2003. Synergy and contingency as driving forces for the evolution of multiple secondary metabolite production by Streptomyces species. Proc Nat Acad Sci U S A. 100(Suppl 2):14555-14561.
-
(2003)
Proc Nat Acad Sci U S A.
, vol.100
, pp. 14555-14561
-
-
Challis, G.L.1
Hopwood, D.A.2
-
14
-
-
84877859261
-
Genomics-driven discovery of the pneumocandin biosynthetic gene cluster in the fungus Glarea lozoyensis
-
Chen L, Yue Q, Zhang X, Xiang M, Wang C, Li S, Che Y, Ortiz-Lopez FJ, Bills GF, Liu X, et al. 2013. Genomics-driven discovery of the pneumocandin biosynthetic gene cluster in the fungus Glarea lozoyensis. BMC Bioinformatics. 14:339.
-
(2013)
BMC Bioinformatics.
, vol.14
, pp. 339
-
-
Chen, L.1
Yue, Q.2
Zhang, X.3
Xiang, M.4
Wang, C.5
Li, S.6
Che, Y.7
Ortiz-Lopez, F.J.8
Bills, G.F.9
Liu, X.10
-
15
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
Edgar RC. 2010. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26:2460-2461.
-
(2010)
Bioinformatics
, vol.26
, pp. 2460-2461
-
-
Edgar, R.C.1
-
16
-
-
43249118838
-
Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus
-
Fedorova ND, Khaldi N, Joardar VS, Maiti R, Amedeo P, Anderson MJ, Crabtree J, Silva JC, Badger JH, Albarraq A, et al. 2008. Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus. PLoS Genet. 4:e1000046.
-
(2008)
PLoS Genet.
, vol.4
, pp. e1000046
-
-
Fedorova, N.D.1
Khaldi, N.2
Joardar, V.S.3
Maiti, R.4
Amedeo, P.5
Anderson, M.J.6
Crabtree, J.7
Silva, J.C.8
Badger, J.H.9
Albarraq, A.10
-
17
-
-
42449155111
-
The evolution of gene collectives: How natural selection drives chemical innovation
-
Fischbach MA,Walsh CT, Clardy J. 2008. The evolution of gene collectives: how natural selection drives chemical innovation. Proc Nat Acad Sci U S A. 105:4601-4608.
-
(2008)
Proc Nat Acad Sci U S A.
, vol.105
, pp. 4601-4608
-
-
Fischbach, M.A.1
Walsh, C.T.2
Clardy, J.3
-
18
-
-
84946033866
-
Dimensions of horizontal gene transfer in eukaryotic microbial pathogens
-
Gluck-Thaler E, Slot JC. 2015. Dimensions of horizontal gene transfer in eukaryotic microbial pathogens. PLoS Pathogens. 11:e1005156.
-
(2015)
PLoS Pathogens.
, vol.11
, pp. e1005156
-
-
Gluck-Thaler, E.1
Slot, J.C.2
-
19
-
-
84905966224
-
Ecology drives the distribution of specialized tyrosine metabolism modules in fungi
-
Greene GH, McGary KL, Rokas A, Slot JC. 2014. Ecology drives the distribution of specialized tyrosine metabolism modules in fungi. Genome Biol Evol. 6:121-132.
-
(2014)
Genome Biol Evol.
, vol.6
, pp. 121-132
-
-
Greene, G.H.1
McGary, K.L.2
Rokas, A.3
Slot, J.C.4
-
20
-
-
33646153990
-
Development of a Fusarium graminearum Affymetrix GeneChip for profiling fungal gene expression in vitro and in planta
-
Guldener U, Seong KY, Boddu J, Cho S, Trail F, Xu JR, Adam G, Mewes HW, Muehlbauer GJ, Kistler HC. 2006. Development of a Fusarium graminearum Affymetrix GeneChip for profiling fungal gene expression in vitro and in planta. Fungal Genet Biol. 43:316-325.
-
(2006)
Fungal Genet Biol.
, vol.43
, pp. 316-325
-
-
Guldener, U.1
Seong, K.Y.2
Boddu, J.3
Cho, S.4
Trail, F.5
Xu, J.R.6
Adam, G.7
Mewes, H.W.8
Muehlbauer, G.J.9
Kistler, H.C.10
-
21
-
-
0027976721
-
Identification and characterization of Aspergillus nidulans mutants defective in cytokinesis
-
Harris SD, Morrell JL, Hamer JE. 1994. Identification and characterization of Aspergillus nidulans mutants defective in cytokinesis. Genetics 136:517-532.
-
(1994)
Genetics
, vol.136
, pp. 517-532
-
-
Harris, S.D.1
Morrell, J.L.2
Hamer, J.E.3
-
22
-
-
48249157844
-
Histone deacetylase genes in Arabidopsis development
-
Hollender C, Liu Z. 2008. Histone deacetylase genes in Arabidopsis development. J Integr Plant Biol. 50:875-885.
-
(2008)
J Integr Plant Biol.
, vol.50
, pp. 875-885
-
-
Hollender, C.1
Liu, Z.2
-
23
-
-
0034849408
-
MRBAYES: Bayesian inference of phylogenetic trees
-
Huelsenbeck JP, Ronquist F. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17
-
(2001)
Bioinformatics
, vol.17
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
24
-
-
0034047654
-
Antiplasmodial compounds from the wood-decayed fungus Xylaria sp. BCC1067
-
IsakaM, Jaturapat A, Kladwang W, Punya J, Lertwerawat Y, Tanticharoen M, Thebtaranonth Y. 2000. Antiplasmodial compounds from the wood-decayed fungus Xylaria sp. BCC 1067. Planta Med. 66:473-475.
-
(2000)
Planta Med.
, vol.66
, pp. 473-475
-
-
Isaka, M.1
Jaturapat, A.2
Kladwang, W.3
Punya, J.4
Lertwerawat, Y.5
Tanticharoen, M.6
Thebtaranonth, Y.7
-
25
-
-
0037774715
-
Characterisation and expression analysis of a nitrate transporter and nitrite reductase genes, two members of a gene cluster for nitrate assimilation from the symbiotic basidiomycete Hebeloma cylindrosporum
-
Jargeat P, Rekangalt D, Verner M-C, Gay G, Debaud J-C, Marmeisse R, Fraissinet-Tachet L. 2003. Characterisation and expression analysis of a nitrate transporter and nitrite reductase genes, two members of a gene cluster for nitrate assimilation from the symbiotic basidiomycete Hebeloma cylindrosporum. Curr Genet. 43:199-205.
-
(2003)
Curr Genet.
, vol.43
, pp. 199-205
-
-
Jargeat, P.1
Rekangalt, D.2
Verner, M.-C.3
Gay, G.4
Debaud, J.-C.5
Marmeisse, R.6
Fraissinet-Tachet, L.7
-
26
-
-
85011899864
-
Draft genome sequence of Coniochaeta ligniaria NRRL 30616, a lignocellulolytic fungus for bioabatement of inhibitors in plant biomass hydrolysates
-
Jimenez DJ, Hector RE, Riley R, Lipzen A, Kuo RC, AmirebrahimiM, Barry KW, Grigoriev IV, van Elsas JD, Nichols NN. 2017. Draft genome sequence of Coniochaeta ligniaria NRRL 30616, a lignocellulolytic fungus for bioabatement of inhibitors in plant biomass hydrolysates. Genome Announc. 5:1-2.
-
(2017)
Genome Announc.
, vol.5
, pp. 1-2
-
-
Jimenez, D.J.1
Hector, R.E.2
Riley, R.3
Lipzen, A.4
Kuo, R.C.5
Amirebrahimi, M.6
Barry, K.W.7
Grigoriev, I.V.8
Van Elsas, J.D.9
Nichols, N.N.10
-
27
-
-
0037100671
-
MAFFT: A novel method for rapid multiple sequence alignment based on fast Fourier transform
-
Katoh K, Misawa K, Kuma K-I, Miyata T. 2002. MAFFT: A novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 30:3059-3066.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 3059-3066
-
-
Katoh, K.1
Misawa, K.2
Kuma, K.-I.3
Miyata, T.4
-
28
-
-
44649170477
-
Evidence for horizontal transfer of a secondary metabolite gene cluster between fungi
-
Khaldi N, Collemare J, Lebrun MH, Wolfe KH. 2008. Evidence for horizontal transfer of a secondary metabolite gene cluster between fungi. Genome Biol. 9:R18.
-
(2008)
Genome Biol.
, vol.9
, pp. R18
-
-
Khaldi, N.1
Collemare, J.2
Lebrun, M.H.3
Wolfe, K.H.4
-
29
-
-
0347994901
-
Phylogenomic analysis of type i polyketide synthase gene in pathogenic and saprobic ascomycetes
-
Kroken S, Glass NL, Taylor JW, Yoder OC, Turgeon BG. 2003. Phylogenomic analysis of type I polyketide synthase gene in pathogenic and saprobic ascomycetes. Proc Nat Acad Sci U S A. 100:15670-15675.
-
(2003)
Proc Nat Acad Sci U S A.
, vol.100
, pp. 15670-15675
-
-
Kroken, S.1
Glass, N.L.2
Taylor, J.W.3
Yoder, O.C.4
Turgeon, B.G.5
-
30
-
-
0037465638
-
Anti-parasitic activity of depudecin on Neospora caninum via the inhibition of histone deacetylase
-
Kwon HJ, Kim JH, Kim M, Lee JK, Hwang WS, Kim DY. 2003. Anti-parasitic activity of depudecin on Neospora caninum via the inhibition of histone deacetylase. Vet Parasitol. 112:269-276.
-
(2003)
Vet Parasitol.
, vol.112
, pp. 269-276
-
-
Kwon, H.J.1
Kim, J.H.2
Kim, M.3
Lee, J.K.4
Hwang, W.S.5
Kim, D.Y.6
-
31
-
-
78149256307
-
BUCKy: Gene tree/species tree reconciliation with Bayesian concordance analysis
-
Larget BR, Kotha SK, Dewey CN, Ané C. 2010. BUCKy: gene tree/species tree reconciliation with Bayesian concordance analysis. Bioinformatics 26:2910-2911.
-
(2010)
Bioinformatics
, vol.26
, pp. 2910-2911
-
-
Larget, B.R.1
Kotha, S.K.2
Dewey, C.N.3
Ané, C.4
-
32
-
-
0032793852
-
Selfish operons: The evolutionary impact of gene clustering in prokaryotes and eukaryotes
-
Lawrence J. 1999. Selfish operons: The evolutionary impact of gene clustering in prokaryotes and eukaryotes. Curr Opin Genet Dev. 9:642-648.
-
(1999)
Curr Opin Genet Dev.
, vol.9
, pp. 642-648
-
-
Lawrence, J.1
-
33
-
-
0029847554
-
Selfish operons: Horizontal transfermay drive the evolution of gene clusters
-
Lawrence JG, Roth JR. 1996. Selfish operons: horizontal transfermay drive the evolution of gene clusters. Genetics 143:1843-1860.
-
(1996)
Genetics
, vol.143
, pp. 1843-1860
-
-
Lawrence, J.G.1
Roth, J.R.2
-
34
-
-
0000074347
-
Fumonisin B1 production by strains from different mating populations of Gibberella fujikuroi (Fusarium section Liseola)
-
Leslie JF, Plattner RD, Desjardins AE, Klittich CJR. 1992. Fumonisin B1 production by strains from different mating populations of Gibberella fujikuroi (Fusarium section Liseola). Phytopathology 82:341-345.
-
(1992)
Phytopathology
, vol.82
, pp. 341-345
-
-
Leslie, J.F.1
Plattner, R.D.2
Desjardins, A.E.3
Klittich, C.J.R.4
-
36
-
-
84954543223
-
Draft genome sequence and chemical profiling of Fusarium langsethiae, an emerging producer of type A trichothecenes
-
Lysøe E, Frandsen RJN, Divon HH, Terzi V, Orru L, Lamontanara A, Kolseth A-K, Nielsen KF, Thrane U. 2016. Draft genome sequence and chemical profiling of Fusarium langsethiae, an emerging producer of type A trichothecenes. Int J Food Microbiol. 221:29-36.
-
(2016)
Int J Food Microbiol.
, vol.221
, pp. 29-36
-
-
Lysøe, E.1
Frandsen, R.J.N.2
Divon, H.H.3
Terzi, V.4
Orru, L.5
Lamontanara, A.6
Kolseth, A.-K.7
Nielsen, K.F.8
Thrane, U.9
-
37
-
-
77949714038
-
Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium
-
Ma LJ, van der Does HC, Borkovich KA, Coleman JJ, Daboussi MJ, Di Pietro A, Dufresne M, FreitagM, GrabherrM, Henrissat B, et al. 2010. Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium. Nature 464:367-373.
-
(2010)
Nature
, vol.464
, pp. 367-373
-
-
Ma, L.J.1
Van Der Does, H.C.2
Borkovich, K.A.3
Coleman, J.J.4
Daboussi, M.J.5
Di Pietro, A.6
Dufresne, M.7
Freitag, M.8
Grabherr, M.9
Henrissat, B.10
-
38
-
-
0026755646
-
Depudecin: A novel compound inducing the flat phenotype of NIH3T3 cells doubly transformed by Ras-and Src-oncogene, produced by Alternaria brassicicola
-
Matsumoto M, Matsutani S, Sugita K, Yoshida H, Hayashi F, Terui Y, Nakai H, Uotani N, Kawamura Y, Matsumoto K, et al. 1992. Depudecin: A novel compound inducing the flat phenotype of NIH3T3 cells doubly transformed by Ras-and Src-oncogene, produced by Alternaria brassicicola. J Antibiot. 45:879-885.
-
(1992)
J Antibiot.
, vol.45
, pp. 879-885
-
-
Matsumoto, M.1
Matsutani, S.2
Sugita, K.3
Yoshida, H.4
Hayashi, F.5
Terui, Y.6
Nakai, H.7
Uotani, N.8
Kawamura, Y.9
Matsumoto, K.10
-
39
-
-
84879900635
-
Physical linkage of metabolic genes in fungi is an adaptation against the accumulation of toxic intermediate compounds
-
McGary KL, Slot JC, Rokas A. 2013. Physical linkage of metabolic genes in fungi is an adaptation against the accumulation of toxic intermediate compounds. Proc Nat Acad Sci U S A. 110:11481-11486.
-
(2013)
Proc Nat Acad Sci U S A.
, vol.110
, pp. 11481-11486
-
-
McGary, K.L.1
Slot, J.C.2
Rokas, A.3
-
40
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
Mortazavi A,Williams BA,McCue K, Schaeffer L,Wold B. 2008.Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods. 5:621-628.
-
(2008)
Nat Methods.
, vol.5
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
41
-
-
9744245452
-
Bayesian estimation of ancestral character states on phylogenies
-
Pagel M, Meade A, Barker D. 2004. Bayesian estimation of ancestral character states on phylogenies. Syst Biol. 53:673-684.
-
(2004)
Syst Biol.
, vol.53
, pp. 673-684
-
-
Pagel, M.1
Meade, A.2
Barker, D.3
-
42
-
-
67649327176
-
FastTree: Computing largeminimum evolution trees with profiles instead of a distance matrix
-
PriceMN, Dehal PS, Arkin AP. 2009. FastTree: computing largeminimum evolution trees with profiles instead of a distance matrix. Mol Biol Evol. 26:1641-1650.
-
(2009)
Mol Biol Evol.
, vol.26
, pp. 1641-1650
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
43
-
-
0037373801
-
Co-expression of 15 contiguous genes delineates a fumonisin biosynthetic gene cluster in Gibberella moniliformis
-
Proctor RH, Brown DW, Plattner RD, Desjardins AE. 2003. Co-expression of 15 contiguous genes delineates a fumonisin biosynthetic gene cluster in Gibberella moniliformis. Fungal Genet Biol. 38:237-249.
-
(2003)
Fungal Genet Biol.
, vol.38
, pp. 237-249
-
-
Proctor, R.H.1
Brown, D.W.2
Plattner, R.D.3
Desjardins, A.E.4
-
44
-
-
0032847692
-
A polyketide synthase gene required for biosynthesis of fumonisin mycotoxins in Gibberella fujikuroi mating population A
-
Proctor RH, Desjardins AE, Plattner RD, Hohn TM. 1999. A polyketide synthase gene required for biosynthesis of fumonisin mycotoxins in Gibberella fujikuroi mating population A. Fungal Genet Biol. 27:100-112.
-
(1999)
Fungal Genet Biol.
, vol.27
, pp. 100-112
-
-
Proctor, R.H.1
Desjardins, A.E.2
Plattner, R.D.3
Hohn, T.M.4
-
45
-
-
84885390419
-
Birth, death and horizontal transfer of the fumonisin biosynthetic gene cluster during the evolutionary diversification of Fusarium
-
Proctor RH, Van Hove F, Susca A, Stea G, Busman M, van der Lee T, Waalwijk C, Moretti A, Ward TJ. 2013. Birth, death and horizontal transfer of the fumonisin biosynthetic gene cluster during the evolutionary diversification of Fusarium. Mol Microbiol. 90:290-306.
-
(2013)
Mol Microbiol.
, vol.90
, pp. 290-306
-
-
Proctor, R.H.1
Van Hove, F.2
Susca, A.3
Stea, G.4
Busman, M.5
Van Der Lee, T.6
Waalwijk, C.7
Moretti, A.8
Ward, T.J.9
-
46
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
47
-
-
84872137046
-
A functional bikaverin biosynthesis gene cluster in rare strains of Botrytis cinerea is positively controlled by VELVET
-
Schumacher J, Gautier A, Morgant G, Studt L, Ducrot P-H, Le Pecheur P, Azeddine S, Fillinger S, Leroux P, Tudzynski B, et al. 2013. A functional bikaverin biosynthesis gene cluster in rare strains of Botrytis cinerea is positively controlled by VELVET. PLoS ONE. 8:e53729.
-
(2013)
PLoS ONE.
, vol.8
, pp. e53729
-
-
Schumacher, J.1
Gautier, A.2
Morgant, G.3
Studt, L.4
Ducrot, P.-H.5
Le Pecheur, P.6
Azeddine, S.7
Fillinger, S.8
Leroux, P.9
Tudzynski, B.10
-
48
-
-
79151477225
-
Horizontal transfer of a large and highly toxic secondary metabolic gene cluster between fungi
-
Slot JC, Rokas A. 2011. Horizontal transfer of a large and highly toxic secondary metabolic gene cluster between fungi. Curr Biol. 21:134-139.
-
(2011)
Curr Biol.
, vol.21
, pp. 134-139
-
-
Slot, J.C.1
Rokas, A.2
-
49
-
-
85014857500
-
Evolution of a heavy metal homeostasis/resistance island reflects increasing copper stress in enterobacteria
-
Staehlin BM, Gibbons JG, Rokas A, O'Halloran TV, Slot JC. 2016. Evolution of a heavy metal homeostasis/resistance island reflects increasing copper stress in enterobacteria. Genome Biol Evol. 8:811-826.
-
(2016)
Genome Biol Evol.
, vol.8
, pp. 811-826
-
-
Staehlin, B.M.1
Gibbons, J.G.2
Rokas, A.3
O'Halloran, T.V.4
Slot, J.C.5
-
50
-
-
33750403801
-
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688-2690.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
51
-
-
0026592449
-
On the evolution of functional secondary metabolites (natural products)
-
Stone MJ, Williams DH. 1992. On the evolution of functional secondary metabolites (natural products). Mol Microbiol. 6:29-34.
-
(1992)
Mol Microbiol.
, vol.6
, pp. 29-34
-
-
Stone, M.J.1
Williams, D.H.2
-
52
-
-
84862866158
-
Why biosynthetic genes for chemical defense compounds cluster
-
Takos AM, Rook F. 2012. Why biosynthetic genes for chemical defense compounds cluster. Trends Plant Sci. 17:383-388.
-
(2012)
Trends Plant Sci.
, vol.17
, pp. 383-388
-
-
Takos, A.M.1
Rook, F.2
-
53
-
-
0034132612
-
Biosynthesis of depudecin, a metabolite of Nimbya scirpicola
-
Tanaka M, Fujimori T, Nabeta K. 2000. Biosynthesis of depudecin, a metabolite of Nimbya scirpicola. Biosci Biotechnol Biochem. 64:244-247.
-
(2000)
Biosci Biotechnol Biochem.
, vol.64
, pp. 244-247
-
-
Tanaka, M.1
Fujimori, T.2
Nabeta, K.3
-
54
-
-
4444383780
-
Diversity in metabolite production by Fusarium langsethiae, Fusarium poae, and Fusarium sporotrichioides
-
Thrane U, Adler A, Clasen PE, Galvano F, LangsethW, Lew H, Logrieco A, Nielsen KF, Ritieni A. 2004. Diversity in metabolite production by Fusarium langsethiae, Fusarium poae, and Fusarium sporotrichioides. Int J Food Microbiol. 95:257-266.
-
(2004)
Int J Food Microbiol.
, vol.95
, pp. 257-266
-
-
Thrane, U.1
Adler, A.2
Clasen, P.E.3
Galvano, F.4
Langseth, W.5
Lew, H.6
Logrieco, A.7
Nielsen, K.F.8
Ritieni, A.9
-
56
-
-
0033762670
-
Horizontal gene transfer and the evolution of secondary metabolite gene clusters in fungi: An hypothesis
-
Walton JD. 2000. Horizontal gene transfer and the evolution of secondary metabolite gene clusters in fungi: an hypothesis. Fungal Genet Biol. 30:167-171.
-
(2000)
Fungal Genet Biol.
, vol.30
, pp. 167-171
-
-
Walton, J.D.1
-
57
-
-
33746208944
-
HC-toxin
-
Walton JD. 2006. HC-toxin. Phytochemistry 67:1406-14013.
-
(2006)
Phytochemistry
, vol.67
, pp. 1406-14013
-
-
Walton, J.D.1
-
58
-
-
70249111820
-
Biosynthesis and role in virulence of the histone deacetylase inhibitor depudecin from Alternaria brassicicola
-
Wight WD, Kim KH, Lawrence CB, Walton JD. 2009. Biosynthesis and role in virulence of the histone deacetylase inhibitor depudecin from Alternaria brassicicola. Mol Plant-Microbe Interact. 22:1258-1267.
-
(2009)
Mol Plant-Microbe Interact.
, vol.22
, pp. 1258-1267
-
-
Wight, W.D.1
Kim, K.H.2
Lawrence, C.B.3
Walton, J.D.4
-
59
-
-
0042823585
-
Evolution of secondary metabolites from an ecological and molecular phylogenetic perspective
-
Wink M. 2003. Evolution of secondary metabolites from an ecological and molecular phylogenetic perspective. Phytochemistry 64:3-19.
-
(2003)
Phytochemistry
, vol.64
, pp. 3-19
-
-
Wink, M.1
-
60
-
-
84919683973
-
The evolution of fungal metabolic pathways
-
Wisecaver JH, Slot JC, Rokas A. 2014. The evolution of fungal metabolic pathways. PLoS Genet. 10:e1004816.
-
(2014)
PLoS Genet.
, vol.10
, pp. e1004816
-
-
Wisecaver, J.H.1
Slot, J.C.2
Rokas, A.3
|