메뉴 건너뛰기




Volumn 2, Issue , 2017, Pages

Stress and stability: Applying the Anna Karenina principle to animal microbiomes

Author keywords

[No Author keywords available]

Indexed keywords

ACQUIRED IMMUNE DEFICIENCY SYNDROME; ALCOHOLISM; ALLERGIC DISEASE; ANIMAL MICROBIOME; ANNA KARENINA PRINCIPLE; AUTOIMMUNE DISEASE; CROHN DISEASE; DYSBIOSIS; HOST PATHOGEN INTERACTION; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS INFECTION; IMMUNE DEFICIENCY; IMMUNE RESPONSE; IMMUNOMODULATION; INSULIN DEPENDENT DIABETES MELLITUS; MICROBIAL COMMUNITY; MICROBIAL DIVERSITY; MICROBIOLOGICAL PARAMETERS; MICROBIOME; NONHUMAN; PERSONALIZED MEDICINE; POPULATION DYNAMICS; PRIORITY JOURNAL; REVIEW; SMOKING; SPECIES COMPOSITION; SYMBIOSIS; ANIMAL; LUNG; MARKOV CHAIN; MICROBIAL CONSORTIUM; MICROFLORA; ORGANISMAL INTERACTION; PHYSIOLOGICAL STRESS; PHYSIOLOGY; VIROLOGY;

EID: 85028323483     PISSN: None     EISSN: 20585276     Source Type: Journal    
DOI: 10.1038/nmicrobiol.2017.121     Document Type: Review
Times cited : (613)

References (86)
  • 1
    • 84874479799 scopus 로고    scopus 로고
    • Animals in a bacterial world, a new imperative for the life sciences
    • McFall-Ngai, M. et al. Animals in a bacterial world, a new imperative for the life sciences. Proc. Natl Acad. Sci. USA 110, 3229-3236 (2013).
    • (2013) Proc. Natl Acad. Sci. USA , vol.110 , pp. 3229-3236
    • McFall-Ngai, M.1
  • 2
    • 0030982247 scopus 로고    scopus 로고
    • A molecular view of microbial diversity and the biosphere
    • Pace, N. R. A molecular view of microbial diversity and the biosphere. Science 276, 734-740 (1997).
    • (1997) Science , vol.276 , pp. 734-740
    • Pace, N.R.1
  • 3
    • 84966929319 scopus 로고    scopus 로고
    • A new view of the tree of life
    • Hug, L. A. et al. A new view of the tree of life. Nat. Microbiol. 1, 16048 (2016).
    • (2016) Nat. Microbiol , vol.1 , pp. 16048
    • Hug, L.A.1
  • 4
    • 24944587193 scopus 로고    scopus 로고
    • Towards a genome-based taxonomy for prokaryotes
    • Konstantinidis, K. T. & Tiedje, J. M. Towards a genome-based taxonomy for prokaryotes. J. Bacteriol. 187, 6258-6264 (2005).
    • (2005) J. Bacteriol , vol.187 , pp. 6258-6264
    • Konstantinidis, K.T.1    Tiedje, J.M.2
  • 5
    • 77954238817 scopus 로고    scopus 로고
    • A global network of coexisting microorganisms from environmental and whole-genome sequence data
    • Chaffron, S., Rehrauer, H., Pernthaler, J. & von Mering, C. A global network of coexisting microorganisms from environmental and whole-genome sequence data. Genome Res. 20, 947-959 (2010).
    • (2010) Genome Res , vol.20 , pp. 947-959
    • Chaffron, S.1    Rehrauer, H.2    Pernthaler, J.3    Von Mering, C.4
  • 6
    • 77955085506 scopus 로고    scopus 로고
    • Ribosomal RNA diversity predicts genome diversity in gut bacteria and their relatives
    • Zaneveld, J. R., Lozupone, C., Gordon, J. I. & Knight, R. Ribosomal RNA diversity predicts genome diversity in gut bacteria and their relatives. Nucleic Acids Res. 38, 3869-3879 (2010).
    • (2010) Nucleic Acids Res , vol.38 , pp. 3869-3879
    • Zaneveld, J.R.1    Lozupone, C.2    Gordon, J.I.3    Knight, R.4
  • 7
    • 84884127512 scopus 로고    scopus 로고
    • Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
    • Langille, M. G. I. et al. Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences. Nat. Biotechnol. 31, 814-821 (2013).
    • (2013) Nat. Biotechnol , vol.31 , pp. 814-821
    • Langille, M.G.I.1
  • 8
    • 84881138595 scopus 로고    scopus 로고
    • Insights into the phylogeny and coding potential of microbial dark matter
    • Rinke, C. et al. Insights into the phylogeny and coding potential of microbial dark matter. Nature 499, 431-437 (2013).
    • (2013) Nature , vol.499 , pp. 431-437
    • Rinke, C.1
  • 9
  • 11
    • 78650534387 scopus 로고    scopus 로고
    • Commensal bacteria play a role in mating preference of Drosophila melanogaster
    • Sharon, G. et al. Commensal bacteria play a role in mating preference of Drosophila melanogaster. Proc. Natl Acad. Sci. USA 107, 20051-20056 (2010).
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 20051-20056
    • Sharon, G.1
  • 12
    • 84894118144 scopus 로고    scopus 로고
    • Microbiota modulate behavioral and physiological abnormalities associated with neurodevelopmental disorders
    • Hsiao, E. Y. et al. Microbiota modulate behavioral and physiological abnormalities associated with neurodevelopmental disorders. Cell 155, 1451-1463 (2013).
    • (2013) Cell , vol.155 , pp. 1451-1463
    • Hsiao, E.Y.1
  • 13
    • 4344568725 scopus 로고    scopus 로고
    • The winnowing: Establishing the squid-vibrio symbiosis
    • Nyholm, S. V. & McFall-Ngai, M. The winnowing: establishing the squid-vibrio symbiosis. Nat. Rev. Microbiol. 2, 632-642 (2004).
    • (2004) Nat. Rev. Microbiol , vol.2 , pp. 632-642
    • Nyholm, S.V.1    McFall-Ngai, M.2
  • 15
    • 84933507643 scopus 로고    scopus 로고
    • Defensive symbioses of animals with prokaryotic and eukaryotic microorganisms
    • Flórez, L. V., Biedermann, P. H. W., Engl, T. & Kaltenpoth, M. Defensive symbioses of animals with prokaryotic and eukaryotic microorganisms. Nat. Prod. Rep. 32, 904-936 (2015).
    • (2015) Nat. Prod. Rep , vol.32 , pp. 904-936
    • Flórez, L.V.1    Biedermann, P.H.W.2    Engl, T.3    Kaltenpoth, M.4
  • 16
    • 84870266477 scopus 로고    scopus 로고
    • The evolution of mutualism in gut microbiota via host epithelial selection
    • Ellner, S. P., Schluter, J. & Foster, K. R. The evolution of mutualism in gut microbiota via host epithelial selection. PLoS Biol. 10, e1001424 (2012).
    • (2012) PLoS Biol , vol.10 , pp. e1001424
    • Ellner, S.P.1    Schluter, J.2    Foster, K.R.3
  • 17
    • 84879515171 scopus 로고    scopus 로고
    • Bacteriophage adhering to mucus provide a non-host-derived immunity
    • Barr, J. J. et al. Bacteriophage adhering to mucus provide a non-host-derived immunity. Proc. Natl Acad. Sci. USA 110, 10771-10776 (2013).
    • (2013) Proc. Natl Acad. Sci. USA , vol.110 , pp. 10771-10776
    • Barr, J.J.1
  • 18
    • 0000594195 scopus 로고
    • Evolution and measurement of species diversity
    • Whittaker, R. H. Evolution and measurement of species diversity. Taxon 21, 213 (1972).
    • (1972) Taxon , vol.21 , pp. 213
    • Whittaker, R.H.1
  • 19
    • 58749112734 scopus 로고    scopus 로고
    • A core gut microbiome in obese and lean twins
    • Turnbaugh, P. J. et al. A core gut microbiome in obese and lean twins. Nature 457, 480-484 (2008).
    • (2008) Nature , vol.457 , pp. 480-484
    • Turnbaugh, P.J.1
  • 20
    • 84912572054 scopus 로고    scopus 로고
    • The pathogen Batrachochytrium dendrobatidis disturbs the frog skin microbiome during a natural epidemic and experimental infection
    • Jani, A. J. & Briggs, C. J. The pathogen Batrachochytrium dendrobatidis disturbs the frog skin microbiome during a natural epidemic and experimental infection. Proc. Natl Acad. Sci. USA 111, E5049-E5058 (2014).
    • (2014) Proc. Natl Acad. Sci. USA , vol.111 , pp. E5049-E5058
    • Jani, A.J.1    Briggs, C.J.2
  • 21
    • 84975038062 scopus 로고    scopus 로고
    • Diversity, structure and convergent evolution of the global sponge microbiome
    • Thomas, T. et al. Diversity, structure and convergent evolution of the global sponge microbiome. Nat. Commun. 7, 11870 (2016).
    • (2016) Nat. Commun , vol.7 , pp. 11870
    • Thomas, T.1
  • 22
    • 84930645229 scopus 로고    scopus 로고
    • Microbiome profiles in periodontitis in relation to host and disease characteristics
    • Yilmaz, Ö. et al. Microbiome profiles in periodontitis in relation to host and disease characteristics. PloS ONE 10, e0127077 (2015).
    • (2015) PloS ONE , vol.10 , pp. e0127077
    • Yilmaz, Ö.1
  • 23
    • 84935500226 scopus 로고    scopus 로고
    • Coral transplantation triggers shift in microbiome and promotion of coral disease associated potential pathogens
    • Casey, J. M., Connolly, S. R. & Ainsworth, T. D. Coral transplantation triggers shift in microbiome and promotion of coral disease associated potential pathogens. Sci. Rep. 5, 11903 (2015).
    • (2015) Sci. Rep , vol.5 , pp. 11903
    • Casey, J.M.1    Connolly, S.R.2    Ainsworth, T.D.3
  • 24
    • 84908278472 scopus 로고    scopus 로고
    • Gut microorganisms of mammalian herbivores facilitate intake of plant toxins
    • Kohl, K. D. et al. Gut microorganisms of mammalian herbivores facilitate intake of plant toxins. Ecol. Lett. 17, 1238-1246 (2014).
    • (2014) Ecol. Lett , vol.17 , pp. 1238-1246
    • Kohl, K.D.1
  • 26
    • 78650616947 scopus 로고    scopus 로고
    • Toward defining the autoimmune microbiome for type 1 diabetes
    • Giongo, A. et al. Toward defining the autoimmune microbiome for type 1 diabetes. ISME J. 5, 82-91 (2010).
    • (2010) ISME J , vol.5 , pp. 82-91
    • Giongo, A.1
  • 27
    • 84856521514 scopus 로고    scopus 로고
    • Dirichlet multinomial mixtures: Generative models for microbial metagenomics
    • Gilbert, J. A., Holmes, I., Harris, K. & Quince, C. Dirichlet multinomial mixtures: generative models for microbial metagenomics. PLoS ONE 7, e30126 (2012).
    • (2012) PLoS ONE , vol.7 , pp. e30126
    • Gilbert, J.A.1    Holmes, I.2    Harris, K.3    Quince, C.4
  • 28
    • 84882297193 scopus 로고    scopus 로고
    • Association of gut microbiota with post-operative clinical course in Crohn's disease
    • Dey, N., Soergel, D. A. W., Repo, S. & Brenner, S. E. Association of gut microbiota with post-operative clinical course in Crohn's disease. BMC Gastroenterol. 13, 131 (2013).
    • (2013) BMC Gastroenterol , vol.13 , pp. 131
    • Dey, N.1    Soergel, D.A.W.2    Repo, S.3    Brenner, S.E.4
  • 29
    • 84860515098 scopus 로고    scopus 로고
    • Colonic microbiome is altered in alcoholism
    • Mutlu, E. A. et al. Colonic microbiome is altered in alcoholism. Am. J. Physiol. Gastrointest. Liver Physiol. 302, G966-G978 (2012).
    • (2012) Am. J. Physiol. Gastrointest. Liver Physiol , vol.302 , pp. G966-G978
    • Mutlu, E.A.1
  • 30
    • 79960714764 scopus 로고    scopus 로고
    • Characterization of fecal microbial communities in patients with liver cirrhosis
    • Chen, Y. et al. Characterization of fecal microbial communities in patients with liver cirrhosis. Hepatology 54, 562-572 (2011).
    • (2011) Hepatology , vol.54 , pp. 562-572
    • Chen, Y.1
  • 31
    • 84937890366 scopus 로고    scopus 로고
    • Gut dysbiosis in acute-on-chronic liver failure and its predictive value for mortality
    • Chen, Y. et al. Gut dysbiosis in acute-on-chronic liver failure and its predictive value for mortality. J. Gastoenterol. Hepatol. 30, 1429-1437 (2015).
    • (2015) J. Gastoenterol. Hepatol , vol.30 , pp. 1429-1437
    • Chen, Y.1
  • 32
    • 78650868433 scopus 로고    scopus 로고
    • Disordered microbial communities in the upper respiratory tract of cigarette smokers
    • Heimesaat, M. M. et al. Disordered microbial communities in the upper respiratory tract of cigarette smokers. PLoS ONE 5, e15216 (2010).
    • (2010) PLoS ONE , vol.5 , pp. e15216
    • Heimesaat, M.M.1
  • 33
    • 84961730132 scopus 로고    scopus 로고
    • Cigarette smoking and the oral microbiome in a large study of American adults
    • Wu, J. et al. Cigarette smoking and the oral microbiome in a large study of American adults. ISME J. 10, 2435-2446 (2016).
    • (2016) ISME J , vol.10 , pp. 2435-2446
    • Wu, J.1
  • 34
    • 84976371964 scopus 로고    scopus 로고
    • Overfishing and nutrient pollution interact with temperature to disrupt coral reefs down to microbial scales
    • Zaneveld, J. R. et al. Overfishing and nutrient pollution interact with temperature to disrupt coral reefs down to microbial scales. Nat. Commun. 7, 11833 (2016).
    • (2016) Nat. Commun , vol.7 , pp. 11833
    • Zaneveld, J.R.1
  • 35
    • 84866006416 scopus 로고    scopus 로고
    • Macroalgae decrease growth and alter microbial community structure of the reef-building coral, Porites astreoides
    • Voolstra, C. R. et al. Macroalgae decrease growth and alter microbial community structure of the reef-building coral, Porites astreoides. PLoS ONE 7, e44246 (2012).
    • (2012) PLoS ONE , vol.7 , pp. e44246
    • Voolstra, C.R.1
  • 36
    • 84947080776 scopus 로고    scopus 로고
    • Climate change stressors destabilize the microbiome of the Caribbean barrel sponge, Xestospongia muta
    • Lesser, M. P., Fiore, C., Slattery, M. & Zaneveld, J. Climate change stressors destabilize the microbiome of the Caribbean barrel sponge, Xestospongia muta. J. Exp. Mar. Biol. Ecol. 475, 11-18 (2016).
    • (2016) J. Exp. Mar. Biol. Ecol , vol.475 , pp. 11-18
    • Lesser, M.P.1    Fiore, C.2    Slattery, M.3    Zaneveld, J.4
  • 37
    • 84862141704 scopus 로고    scopus 로고
    • Human gut microbiome viewed across age and geography
    • Yatsunenko, T. et al. Human gut microbiome viewed across age and geography. Nature 486, 222-227 (2012).
    • (2012) Nature , vol.486 , pp. 222-227
    • Yatsunenko, T.1
  • 38
    • 84898850301 scopus 로고    scopus 로고
    • Prevention and treatment of opportunistic infections in HIV-infected adults and adolescents: Updated guidelines from the Centers for Disease Control and Prevention, National Institutes of Health, and HIV Medicine Association of the Infectious Diseases Society of America
    • Masur, H. et al. Prevention and treatment of opportunistic infections in HIV-infected adults and adolescents: updated guidelines from the Centers for Disease Control and Prevention, National Institutes of Health, and HIV Medicine Association of the Infectious Diseases Society of America. Clin. Infect. Dis. 58, 1308-1311 (2014).
    • (2014) Clin. Infect. Dis , vol.58 , pp. 1308-1311
    • Masur, H.1
  • 39
    • 84963815353 scopus 로고    scopus 로고
    • Microbiome alterations in HIV infection a review
    • Williams, B., Landay, A. & Presti, R. M. Microbiome alterations in HIV infection a review. Cell. Micobiol. 18, 645-651 (2016).
    • (2016) Cell. Micobiol , vol.18 , pp. 645-651
    • Williams, B.1    Landay, A.2    Presti, R.M.3
  • 40
    • 84946580818 scopus 로고    scopus 로고
    • Multicenter comparison of lung and oral microbiomes of HIV-infected and HIV-uninfected individuals
    • Beck, J. M. et al. Multicenter comparison of lung and oral microbiomes of HIV-infected and HIV-uninfected individuals. Am. J. Respir. Crit. Care Med. 192, 1335-1344 (2015).
    • (2015) Am. J. Respir. Crit. Care Med , vol.192 , pp. 1335-1344
    • Beck, J.M.1
  • 41
    • 84988975711 scopus 로고    scopus 로고
    • Effect of advanced HIV infection on the respiratory microbiome
    • Twigg, H. L. et al. Effect of advanced HIV infection on the respiratory microbiome. Am. J. Respir. Crit. Care Med. 194, 226-235 (2016).
    • (2016) Am. J. Respir. Crit. Care Med , vol.194 , pp. 226-235
    • Twigg, H.L.1
  • 42
    • 84922414182 scopus 로고    scopus 로고
    • Intestinal microbiota, microbial translocation, and systemic inflammation in chronic HIV Infection
    • Dinh, D. M. et al. Intestinal microbiota, microbial translocation, and systemic inflammation in chronic HIV Infection. J. Infect. Dis. 211, 19-27 (2015).
    • (2015) J. Infect. Dis , vol.211 , pp. 19-27
    • Dinh, D.M.1
  • 43
    • 84963690519 scopus 로고    scopus 로고
    • Fecal bacterial microbiome diversity in chronic HIV-infected patients in China
    • Sun, Y. et al. Fecal bacterial microbiome diversity in chronic HIV-infected patients in China. Emerg. Microbes Infect. 5, e31 (2016).
    • (2016) Emerg. Microbes Infect , vol.5 , pp. e31
    • Sun, Y.1
  • 44
    • 84883860231 scopus 로고    scopus 로고
    • SIV-induced instability of the chimpanzee gut microbiome
    • Moeller, A. H. et al. SIV-induced instability of the chimpanzee gut microbiome. Cell Host Microbe 14, 340-345 (2013).
    • (2013) Cell Host Microbe , vol.14 , pp. 340-345
    • Moeller, A.H.1
  • 45
    • 84952361307 scopus 로고    scopus 로고
    • Destabilization of the gut microbiome marks the end-stage of simian immunodeficiency virus infection in wild chimpanzees
    • Barbian, H. J. et al. Destabilization of the gut microbiome marks the end-stage of simian immunodeficiency virus infection in wild chimpanzees. Am. J. Primatol. http://dx.doi.org/10.1002/ajp.22515 (2015).
    • (2015) Am. J. Primatol
    • Barbian, H.J.1
  • 46
    • 84925300953 scopus 로고    scopus 로고
    • Stability of the gorilla microbiome despite simian immunodeficiency virus infection
    • Moeller, A. H. et al. Stability of the gorilla microbiome despite simian immunodeficiency virus infection. Mol. Ecol. 24, 690-697 (2015).
    • (2015) Mol. Ecol , vol.24 , pp. 690-697
    • Moeller, A.H.1
  • 47
    • 84928731438 scopus 로고    scopus 로고
    • The oral and conjunctival microbiotas in cats with and without feline immunodeficiency virus infection
    • Weese, S. J., Nichols, J., Jalali, M. & Litster, A. The oral and conjunctival microbiotas in cats with and without feline immunodeficiency virus infection. Vet. Res. 46, 21 (2015).
    • (2015) Vet. Res , vol.46 , pp. 21
    • Weese, S.J.1    Nichols, J.2    Jalali, M.3    Litster, A.4
  • 48
    • 84866429095 scopus 로고    scopus 로고
    • Lung-enriched organisms and aberrant bacterial and fungal respiratory microbiota after lung transplant
    • Charlson, E. S. et al. Lung-enriched organisms and aberrant bacterial and fungal respiratory microbiota after lung transplant. Am. J. Respir. Crit. Care Med. 186, 536-545 (2012).
    • (2012) Am. J. Respir. Crit. Care Med , vol.186 , pp. 536-545
    • Charlson, E.S.1
  • 49
    • 84876144358 scopus 로고    scopus 로고
    • Assessment of microbiome variation during the perioperative period in liver transplant patients: A retrospective analysis
    • Lu, H. et al. Assessment of microbiome variation during the perioperative period in liver transplant patients: a retrospective analysis. Microb. Ecol. 65, 781-791 (2013).
    • (2013) Microb. Ecol , vol.65 , pp. 781-791
    • Lu, H.1
  • 50
    • 84941351063 scopus 로고    scopus 로고
    • Burn injury alters the intestinal microbiome and increases gut permeability and bacterial translocation
    • Raju, R. et al. burn injury alters the intestinal microbiome and increases gut permeability and bacterial translocation. PloS ONE 10, e0129996 (2015).
    • (2015) PloS ONE , vol.10 , pp. e0129996
    • Raju, R.1
  • 52
    • 84907300008 scopus 로고    scopus 로고
    • Immunoglobulin A coating identifies colitogenic bacteria in inflammatory bowel disease
    • Palm, Noah W. et al. Immunoglobulin A coating identifies colitogenic bacteria in inflammatory bowel disease. Cell 158, 1000-1010 (2014).
    • (2014) Cell , vol.158 , pp. 1000-1010
    • Palm Noah, W.1
  • 53
    • 84879909112 scopus 로고    scopus 로고
    • Study of the viral and microbial communities associated with Crohn's disease: A metagenomic approach
    • Pérez-Brocal, V. et al. Study of the viral and microbial communities associated with Crohn's disease: a metagenomic approach. Clin. Transl. Gastroenterol. 4, e36 (2013).
    • (2013) Clin. Transl. Gastroenterol , vol.4 , pp. e36
    • Pérez-Brocal, V.1
  • 54
    • 40949145305 scopus 로고    scopus 로고
    • Unstable composition of the fecal microbiota in ulcerative colitis during clinical remission
    • Martinez, C. et al. Unstable composition of the fecal microbiota in ulcerative colitis during clinical remission. Am. J. Gastroenterol. 103, 643-648 (2008).
    • (2008) Am. J. Gastroenterol , vol.103 , pp. 643-648
    • Martinez, C.1
  • 55
    • 84953852130 scopus 로고    scopus 로고
    • Intestinal microbiota signatures associated with inflammation history in mice experiencing recurring colitis
    • Berry, D. et al. Intestinal microbiota signatures associated with inflammation history in mice experiencing recurring colitis. Front. Microbiol. 6, 1408 (2015).
    • (2015) Front. Microbiol , vol.6 , pp. 1408
    • Berry, D.1
  • 56
    • 85012903225 scopus 로고    scopus 로고
    • Dynamics of the human gut microbiome in inflammatory bowel disease
    • Halfvarson, J. et al. Dynamics of the human gut microbiome in inflammatory bowel disease. Nat. Microbiol. 2, 17004 (2017).
    • (2017) Nat. Microbiol , vol.2 , pp. 17004
    • Halfvarson, J.1
  • 57
    • 84938807601 scopus 로고    scopus 로고
    • Expression of the blood-group-related gene B4galnt2 alters susceptibility to Salmonella infection
    • Tsolis, R. M. et al. Expression of the blood-group-related gene B4galnt2 alters susceptibility to Salmonella infection. PLoS Pathog. 11, e1005008 (2015).
    • (2015) PLoS Pathog , vol.11 , pp. e1005008
    • Tsolis, R.M.1
  • 58
    • 84929121378 scopus 로고    scopus 로고
    • Chronic Trichuris muris infection decreases diversity of the intestinal microbiota and concomitantly increases the abundance of Lactobacilli
    • Allen, I. C. et al. Chronic Trichuris muris infection decreases diversity of the intestinal microbiota and concomitantly increases the abundance of Lactobacilli. PLoS ONE 10, e0125495 (2015).
    • (2015) PLoS ONE , vol.10 , pp. e0125495
    • Allen, I.C.1
  • 59
    • 84929103328 scopus 로고    scopus 로고
    • Chronic Trichuris muris infection in C57BL/6 mice causes significant changes in host microbiota and metabolome: Effects reversed by pathogen clearance
    • Kim, C. H. et al. Chronic Trichuris muris infection in C57BL/6 mice causes significant changes in host microbiota and metabolome: effects reversed by pathogen clearance. PLoS ONE 10, e0125945 (2015).
    • (2015) PLoS ONE , vol.10 , pp. e0125945
    • Kim, C.H.1
  • 60
    • 84872002101 scopus 로고    scopus 로고
    • Chytrid fungus Batrachochytrium dendrobatidis has nonamphibian hosts and releases chemicals that cause pathology in the absence of infection
    • McMahon, T. A. et al. Chytrid fungus Batrachochytrium dendrobatidis has nonamphibian hosts and releases chemicals that cause pathology in the absence of infection. Proc. Natl Acad. Sci. USA 110, 210-215 (2012).
    • (2012) Proc. Natl Acad. Sci. USA , vol.110 , pp. 210-215
    • McMahon, T.A.1
  • 61
    • 84948650195 scopus 로고    scopus 로고
    • Community structure and function of amphibian skin microbes: An experiment with bullfrogs exposed to a chytrid fungus
    • Fisher, M. C. et al. Community structure and function of amphibian skin microbes: an experiment with bullfrogs exposed to a chytrid fungus. PloS ONE 10, e0139848 (2015).
    • (2015) PloS ONE , vol.10 , pp. e0139848
    • Fisher, M.C.1
  • 62
    • 0027804103 scopus 로고
    • Non-parametric multivariate analyses of changes in community structure
    • Clarke, K. R. Non-parametric multivariate analyses of changes in community structure. Austral. Ecol. 18, 117-143 (1993).
    • (1993) Austral. Ecol , vol.18 , pp. 117-143
    • Clarke, K.R.1
  • 63
    • 0002154022 scopus 로고    scopus 로고
    • A new method for non-parametric multivariate analysis of variance
    • Anderson, M. J. A new method for non-parametric multivariate analysis of variance. Austral. Ecol. 26, 32-46 (2001).
    • (2001) Austral. Ecol , vol.26 , pp. 32-46
    • Anderson, M.J.1
  • 64
    • 84880439384 scopus 로고    scopus 로고
    • Predicting and manipulating cardiac drug inactivation by the human gut bacterium Eggerthella lenta
    • Haiser, H. J. et al. Predicting and manipulating cardiac drug inactivation by the human gut bacterium Eggerthella lenta. Science 341, 295-298 (2013).
    • (2013) Science , vol.341 , pp. 295-298
    • Haiser, H.J.1
  • 65
    • 84942847425 scopus 로고    scopus 로고
    • Local bacteria affect the efficacy of chemotherapeutic drugs
    • Lehouritis, P. et al. Local bacteria affect the efficacy of chemotherapeutic drugs. Sci. Rep. 5, 14554 (2015).
    • (2015) Sci. Rep , vol.5 , pp. 14554
    • Lehouritis, P.1
  • 66
    • 78650647326 scopus 로고    scopus 로고
    • Has the microbiota played a critical role in the evolution of the adaptive immune system?
    • Lee, Y. K. & Mazmanian, S. K. Has the microbiota played a critical role in the evolution of the adaptive immune system? Science 330, 1768-1773 (2010).
    • (2010) Science , vol.330 , pp. 1768-1773
    • Lee, Y.K.1    Mazmanian, S.K.2
  • 67
    • 84987602227 scopus 로고    scopus 로고
    • How stable is the human gut microbiota? and why this question matters
    • Brüssow, H. How stable is the human gut microbiota? And why this question matters. Environ. Microbiol. 18, 2779-2783 (2016).
    • (2016) Environ. Microbiol , vol.18 , pp. 2779-2783
    • Brüssow, H.1
  • 68
    • 84892828465 scopus 로고    scopus 로고
    • Diet rapidly and reproducibly alters the human gut microbiome
    • David, L. A. et al. Diet rapidly and reproducibly alters the human gut microbiome. Nature 505, 559-563 (2013).
    • (2013) Nature , vol.505 , pp. 559-563
    • David, L.A.1
  • 69
    • 84954099831 scopus 로고    scopus 로고
    • Diet-induced extinctions in the gut microbiota compound over generations
    • Sonnenburg, E. D. et al. Diet-induced extinctions in the gut microbiota compound over generations. Nature 529, 212-215 (2016).
    • (2016) Nature , vol.529 , pp. 212-215
    • Sonnenburg, E.D.1
  • 70
    • 84953410561 scopus 로고    scopus 로고
    • Skin bacterial diversity of Panamanian frogs is associated with host susceptibility and presence of Batrachochytrium dendrobatidis
    • Rebollar, E. A. et al. Skin bacterial diversity of Panamanian frogs is associated with host susceptibility and presence of Batrachochytrium dendrobatidis. ISME J. 10, 1682-1695 (2016).
    • (2016) ISME J , vol.10 , pp. 1682-1695
    • Rebollar, E.A.1
  • 71
    • 77952243141 scopus 로고    scopus 로고
    • QIIME allows analysis of high-throughput community sequencing data
    • Caporaso, J. G. et al. QIIME allows analysis of high-throughput community sequencing data. Nat. Methods 7, 335-336 (2010).
    • (2010) Nat. Methods , vol.7 , pp. 335-336
    • Caporaso, J.G.1
  • 72
    • 84931265628 scopus 로고    scopus 로고
    • Metagenomics meets time series analysis: Unraveling microbial community dynamics
    • Faust, K., Lahti, L., Gonze, D., de Vos, W. M. & Raes, J. Metagenomics meets time series analysis: unraveling microbial community dynamics. Curr. Opin. Microbiol. 25, 56-66 (2015).
    • (2015) Curr. Opin. Microbiol , vol.25 , pp. 56-66
    • Faust, K.1    Lahti, L.2    Gonze, D.3    De Vos, W.M.4    Raes, J.5
  • 73
    • 85015975393 scopus 로고    scopus 로고
    • Normalization and microbial differential abundance strategies depend upon data characteristics
    • Weiss, S. et al. Normalization and microbial differential abundance strategies depend upon data characteristics. Microbiome 5, 27 (2017).
    • (2017) Microbiome , vol.5 , pp. 27
    • Weiss, S.1
  • 74
    • 79952756960 scopus 로고    scopus 로고
    • Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation
    • Dethlefsen, L. & Relman, D. A. Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation. Proc. Natl Acad. Sci. USA 108, 4554-4561 (2010).
    • (2010) Proc. Natl Acad. Sci. USA , vol.108 , pp. 4554-4561
    • Dethlefsen, L.1    Relman, D.A.2
  • 75
    • 84877119573 scopus 로고    scopus 로고
    • Significant changes in the skin microbiome mediated by the sport of roller derby
    • Meadow, J. F., Bateman, A. C., Herkert, K. M., O'Connor, T. K. & Green, J. L. Significant changes in the skin microbiome mediated by the sport of roller derby. PeerJ 1, e53 (2013).
    • (2013) PeerJ , vol.1 , pp. e53
    • Meadow, J.F.1    Bateman, A.C.2    Herkert, K.M.3    O'Connor, T.K.4    Green, J.L.5
  • 76
    • 85041509204 scopus 로고    scopus 로고
    • Extreme dysbiosis of the microbiome in critical illness
    • McDonald, D. et al. Extreme dysbiosis of the microbiome in critical illness. mSphere 1, e00199-16 (2016).
    • (2016) MSphere , vol.1 , pp. e00199-e00216
    • McDonald, D.1
  • 78
    • 84867099888 scopus 로고    scopus 로고
    • How to assemble a beneficial microbiome in three easy steps
    • Scheuring, I., Yu, D. W. & van Baalen, M. How to assemble a beneficial microbiome in three easy steps. Ecol. Lett. 15, 1300-1307 (2012).
    • (2012) Ecol. Lett , vol.15 , pp. 1300-1307
    • Scheuring, I.1    Yu, D.W.2    Van Baalen, M.3
  • 79
    • 85028323294 scopus 로고    scopus 로고
    • Multi-stability and the origin of microbial community types
    • Gonze, D., Lahti, L., Raes, J. & Faust, K. Multi-stability and the origin of microbial community types. ISME J. http://dx.doi.org/10.1038/ismej.2017.60 (2017).
    • (2017) ISME J
    • Gonze, D.1    Lahti, L.2    Raes, J.3    Faust, K.4
  • 80
    • 84920749744 scopus 로고    scopus 로고
    • Dysbiosis and alterations in predicted functions of the subgingival microbiome in chronic periodontitis
    • Kirst, M. E. et al. Dysbiosis and alterations in predicted functions of the subgingival microbiome in chronic periodontitis. Appl. Environ. Microbiol. 81, 783-793 (2015).
    • (2015) Appl. Environ. Microbiol , vol.81 , pp. 783-793
    • Kirst, M.E.1
  • 81
    • 84860560056 scopus 로고    scopus 로고
    • Temporal shifts in the skin microbiome associated with disease flares and treatment in children with atopic dermatitis
    • Kong, H. H. et al. Temporal shifts in the skin microbiome associated with disease flares and treatment in children with atopic dermatitis. Genome Res. 22, 850-859 (2012).
    • (2012) Genome Res , vol.22 , pp. 850-859
    • Kong, H.H.1
  • 82
    • 84922954930 scopus 로고    scopus 로고
    • Dietary iron depletion at weaning imprints low microbiome diversity and this is not recovered with oral nano Fe(III)
    • Pereira, D. I. A. et al. Dietary iron depletion at weaning imprints low microbiome diversity and this is not recovered with oral nano Fe(III). MicrobiologyOpen 4, 12-27 (2015).
    • (2015) MicrobiologyOpen , vol.4 , pp. 12-27
    • Pereira, D.I.A.1
  • 83
    • 70149096873 scopus 로고    scopus 로고
    • Pharmacometabonomic identification of a significant host-microbiome metabolic interaction affecting human drug metabolism
    • Clayton, T. A., Baker, D., Lindon, J. C., Everett, J. R. & Nicholson, J. K. Pharmacometabonomic identification of a significant host-microbiome metabolic interaction affecting human drug metabolism. Proc. Natl Acad. Sci. USA 106, 14728-14733 (2009).
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , pp. 14728-14733
    • Clayton, T.A.1    Baker, D.2    Lindon, J.C.3    Everett, J.R.4    Nicholson, J.K.5
  • 84
    • 84861992769 scopus 로고    scopus 로고
    • Therapeutic modulation of microbiota-host metabolic interactions
    • Holmes, E. et al. Therapeutic modulation of microbiota-host metabolic interactions. Sci. Transl. Med. 4, 137rv6 (2012).
    • (2012) Sci. Transl. Med , vol.4 , pp. 137rv6
    • Holmes, E.1
  • 85
    • 84883850053 scopus 로고    scopus 로고
    • The gut microbiome: Insights for personalized medicine
    • Gurwitz, D. The gut microbiome: insights for personalized medicine. Drug Dev. Res. 74, 341-343 (2013).
    • (2013) Drug Dev. Res , vol.74 , pp. 341-343
    • Gurwitz, D.1
  • 86
    • 85007605430 scopus 로고    scopus 로고
    • Disturbance regimes predictably alter diversity in an ecologically complex bacterial system
    • Gibbons, S. M. et al. Disturbance regimes predictably alter diversity in an ecologically complex bacterial system. mBio 7, e01372-16 (2016).
    • (2016) MBio , vol.7 , pp. e01372-e01416
    • Gibbons, S.M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.