Erratum: Microbiome profiles in periodontitis in relation to host and disease characteristics (PLoS ONE (2015) 10: 5 (E0127077) DOI: 10.1371/journal.pone.0127077);Microbiome profiles in periodontitis in relation to host and disease characteristics

PLoS ONE

Volumn 10, Issue 5, 2015, Pages

  Hong, Bo Young ^a   Araujo, Michel V Furtado ^a   Strausbaugh, Linda D ^b   Terzi, Evimaria ^c   Ioannidou, Effie ^a   Diaz, Patricia I ^a  

^a UNIVERSITY OF CONNECTICUT HEALTH CENTER   (United States)

^b UNIVERSITY OF CONNECTICUT   (United States)

^c BOSTON UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; RNA 16S;

ADULT; ARTICLE; CLINICAL ARTICLE; CLUSTER ANALYSIS; CONTROLLED STUDY; DEMOGRAPHY; DISEASE SEVERITY; DNA ISOLATION; DNA SEQUENCE; FEMALE; HOST; HUMAN; MALE; MICROBIAL COMMUNITY; MICROBIOME; NONHUMAN; PERIODONTITIS; POPULATION ABUNDANCE; PORPHYROMONAS GINGIVALIS; TANNERELLA FORSYTHIA; TREPONEMA DENTICOLA; GINGIVA; HOST PATHOGEN INTERACTION; MICROBIOLOGY; MICROFLORA; MIDDLE AGED; NONPARAMETRIC TEST; PATHOLOGY; SEVERITY OF ILLNESS INDEX;

PORPHYROMONAS GINGIVALIS; TANNERELLA FORSYTHENSIS; TREPONEMA DENTICOLA;

CLUSTER ANALYSIS; DEMOGRAPHY; FEMALE; GINGIVA; HOST-PATHOGEN INTERACTIONS; HUMANS; MALE; MICROBIOTA; MIDDLE AGED; PERIODONTITIS; SEVERITY OF ILLNESS INDEX; STATISTICS, NONPARAMETRIC;

EID: 84930645229     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0148893     Document Type: Erratum

References (35)

1. Zhou Y, Mihindukulasuriya KA, Gao H, La Rosa PS, Wylie KM, Martin JC, et al.: Exploration of bacterial community classes in major human habitats. Genome Biol 2014; 15(5): R66. doi: 10.1186/gb-2014-15-5-r66 PMID: 24887286
2. Ding T and Schloss PD: Dynamics and associations of microbial community types across the human body. Nature 2014; 509(7500): 357-60. doi: 10.1038/nature13178 PMID: 24739969
3. Arumugam M, Raes J, Pelletier E, Le Paslier D, Yamada T, Mende DR, et al.: Enterotypes of the human gut microbiome. Nature 2011; 473(7346): 174-80. doi: 10.1038/nature09944 PMID: 21508958
4. Ravel J, Gajer P, Abdo Z, Schneider GM, Koenig SS, McCulle SL, et al.: Vaginal microbiome of reproductive-age women. Proc Natl Acad Sci U S A 2011; 108 Suppl 1: 4680-7. doi: 10.1073/pnas.1002611107 PMID: 20534435
5. Hajishengallis G and Lamont RJ: Beyond the red complex and into more complexity: the polymicrobial synergy and dysbiosis (PSD) model of periodontal disease etiology. Mol Oral Microbiol 2012; 27(6):409-19. doi: 10.1111/j.2041-1014.2012.00663.x PMID: 23134607
6. Abusleme L, Dupuy AK, Dutzan N, Silva N, Burleson JA, Strausbaugh LD, et al.: The subgingival microbiome in health and periodontitis and its relationship with community biomass and inflammation. ISME J 2013; 7(5): 1016-25. doi: 10.1038/ismej.2012.174 PMID: 23303375
7. Griffen AL, Beall CJ, Campbell JH, Firestone ND, Kumar PS, Yang ZK, et al.: Distinct and complex bacterial profiles in human periodontitis and health revealed by 16S pyrosequencing. ISME J 2011; 6(6):1176-85. doi: 10.1038/ismej.2011.191 PMID: 22170420
8. Eke PI, Dye BA, Wei L, Thornton-Evans GO, Genco RJ, and CDC Periodontal Disease Surveillance Workgroup: Prevalence of periodontitis in adults in the United States: 2009 and 2010. J Dent Res 2012; 91(10): 914-20. PMID: 22935673
9. Tomar SL and Asma S: Smoking-attributable periodontitis in the United States: findings from NHANES III. National Health and Nutrition Examination Survey. J Periodontol 2000; 71(5): 743-51. PMID: 10872955
10. Tsai C, Hayes C, and Taylor GW: Glycemic control of type 2 diabetes and severe periodontal disease in the US adult population. Community Dent Oral Epidemiol 2002; 30(3): 182-92. PMID: 12000341
11. Grossi SG, Zambon JJ, Ho AW, Koch G, Dunford RG, Machtei EE, et al.: Assessment of risk for periodontal disease. I. Risk indicators for attachment loss. J Periodontol 1994; 65(3): 260-7. PMID: 8164120
12. Ioannidou E and Swede H: Disparities in periodontitis prevalence among chronic kidney disease patients. J Dent Res 2011; 90(6): 730-4. doi: 10.1177/0022034511402209 PMID: 21422478
13. Delima SL, McBride RK, Preshaw PM, Heasman PA, and Kumar PS: Response of subgingival bacteria to smoking cessation. J Clin Microbiol 2010; 48(7): 2344-9. doi: 10.1128/JCM.01821-09 PMID: 20410352
14. Teles RP, Gursky LC, Faveri M, Rosa EA, Teles FR, Feres M, et al.: Relationships between subgingival microbiota and GCF biomarkers in generalized aggressive periodontitis. J Clin Periodontol 2010; 37 (4): 313-23. doi: 10.1111/j.1600-051X.2010.01534.x PMID: 20447254
15. Socransky SS, Haffajee AD, Cugini MA, Smith C, and Kent RL Jr.: Microbial complexes in subgingival plaque. J Clin Periodontol 1998; 25(2): 134-44. PMID: 9495612
16. Socransky SS and Haffajee AD: Periodontal microbial ecology. Periodontol 2000 2005; 38: 135-87. PMID: 15853940
17. Offenbacher S, Barros SP, Singer RE, Moss K, Williams RC, and Beck JD: Periodontal disease at the biofilm-gingival interface. J Periodontol 2007; 78(10): 1911-25. PMID: 18062113
18. Loesche WJ, Syed SA, Schmidt E, and Morrison EC: Bacterial profiles of subgingival plaques in periodontitis. J Periodontol 1985; 56(8): 447-56. PMID: 3869648
19. Haffajee AD, Socransky SS, Smith C, and Dibart S: The use of DNA probes to examine the distribution of subgingival species in subjects with different levels of periodontal destruction. J Clin Periodontol 1992; 19(2): 84-91. PMID: 1318331
20. Teles RP, Haffajee AD, and Socransky SS: Microbiological goals of periodontal therapy. Periodontol 2000 2006; 42: 180-218. PMID: 16930311
21. Dethlefsen L, Huse S, Sogin ML, and Relman DA: The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing. PLoS Biol 2008; 6(11): e280. doi: 10.1371/journal.pbio.0060280 PMID: 19018661
22. Dethlefsen L and Relman DA: Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation. Proc Natl Acad Sci U S A 2011; 108 Suppl 1: 4554-61. doi: 10.1073/pnas.1000087107 PMID: 20847294
23. Diaz PI, Dupuy AK, Abusleme L, Reese B, Obergfell C, Choquette L, et al.: Using high throughput sequencing to explore the biodiversity in oral bacterial communities. Mol Oral Microbiol 2012; 27(3): 182-201. doi: 10.1111/j.2041-1014.2012.00642.x PMID: 22520388
24. Sundquist A, Bigdeli S, Jalili R, Druzin ML, Waller S, Pullen KM, et al.: Bacterial flora-typing with targeted, chip-based Pyrosequencing. BMC Microbiol 2007; 7: 108. PMID: 18047683
25. Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, et al.: Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 2009; 75(23): 7537-41. doi: 10.1128/AEM.01541-09 PMID: 19801464
26. Schloss PD, Gevers D, and Westcott SL: Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies. PLoS One 2011; 6(12): e27310. doi: 10.1371/journal.pone.0027310 PMID: 22194782
27. Wang Q, Garrity GM, Tiedje JM, and Cole JR: Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 2007; 73(16): 5261-7. PMID: 17586664
28. Dewhirst FE, Chen T, Izard J, Paster BJ, Tanner AC, Yu WH, et al.: The human oral microbiome. J Bacteriol 2010; 192(19): 5002-17. doi: 10.1128/JB.00542-10 PMID: 20656903
29. Burbidge JB, Lonnie M, and Robb AL: Alternative Transformations to Handle Extreme Values of the Dependent Variable. J Amer Stat Assoc 1988; 83(401): 123-127.
30. Rousseeuw PJ: Silhouettes-a Graphical Aid to the Interpretation and Validation of Cluster-Analysis. Journal of Computational and Applied Mathematics 1987; 20: 53-65.
31. Perez-Chaparro PJ, Goncalves C, Figueiredo LC, Faveri M, Lobao E, Tamashiro N, et al.: Newly identified pathogens associated with periodontitis: a systematic review. J Dent Res 2014; 93(9): 846-58. doi: 10.1177/0022034514542468 PMID: 25074492
32. Wang BY, Wu J, Lamont RJ, Lin X, and Xie H: Negative correlation of distributions of Streptococcus cristatus and Porphyromonas gingivalis in subgingival plaque. J Clin Microbiol 2009; 47(12): 3902-6. doi: 10.1128/JCM.00072-09 PMID: 19846640
33. Xie H, Hong J, Sharma A, and Wang BY: Streptococcus cristatus ArcA interferes with Porphyromonas gingivalis pathogenicity in mice. J Periodontal Res 2012; 47(5): 578-83. doi: 10.1111/j.1600-0765.2012.01469.x PMID: 22448761
34. Zhou M, Rong R, Munro D, Zhu C, Gao X, Zhang Q, et al.: Investigation of the effect of type 2 diabetes mellitus on subgingival plaque microbiota by high-throughput 16S rDNA pyrosequencing. PLoS One 2013; 8(4): e61516. doi: 10.1371/journal.pone.0061516 PMID: 23613868
35. Haffajee AD, Bogren A, Hasturk H, Feres M, Lopez NJ, and Socransky SS: Subgingival microbiota of chronic periodontitis subjects from different geographic locations. J Clin Periodontol 2004; 31(11):996-1002. PMID: 15491316