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Volumn 7, Issue 1, 2017, Pages

Combinatorial metabolic engineering of Pseudomonas putida KT2440 for efficient mineralization of 1,2,3-trichloropropane

Author keywords

[No Author keywords available]

Indexed keywords

1,2,3-TRICHLOROPROPANE; CARBON; GLYCEROL; OXYGEN; PROPANE;

EID: 85026744718     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/s41598-017-07435-x     Document Type: Article
Times cited : (38)

References (35)
  • 1
    • 84859772410 scopus 로고    scopus 로고
    • Synthetic biology and the development of tools for metabolic engineering
    • Keasling, J. D. Synthetic biology and the development of tools for metabolic engineering. Metab. Eng. 14, 189-195 (2012).
    • (2012) Metab. Eng. , vol.14 , pp. 189-195
    • Keasling, J.D.1
  • 2
    • 84947614696 scopus 로고    scopus 로고
    • Recent advances in microbial production of fuels and chemicals using tools and strategies of systems metabolic engineering
    • Cho, C., Choi, S. Y., Luo, Z. W. & Lee, S. Y. Recent advances in microbial production of fuels and chemicals using tools and strategies of systems metabolic engineering. Biotechnol. Adv. 33, 1455-1466 (2015).
    • (2015) Biotechnol. Adv. , vol.33 , pp. 1455-1466
    • Cho, C.1    Choi, S.Y.2    Luo, Z.W.3    Lee, S.Y.4
  • 3
    • 84902590842 scopus 로고    scopus 로고
    • Immobilized synthetic pathway for biodegradation of toxic recalcitrant pollutant 1, 2, 3-trichloropropane
    • Dvorak, P., Bidmanova, S., Damborsky, J. & Prokop, Z. Immobilized synthetic pathway for biodegradation of toxic recalcitrant pollutant 1, 2, 3-trichloropropane. Environ. Sci. Technol. 48, 6859-6866 (2014).
    • (2014) Environ. Sci. Technol. , vol.48 , pp. 6859-6866
    • Dvorak, P.1    Bidmanova, S.2    Damborsky, J.3    Prokop, Z.4
  • 4
    • 84905904264 scopus 로고    scopus 로고
    • A Pseudomonas putida strain genetically engineered for 1, 2, 3-trichloropropane bioremediation
    • Samin, G. et al. A Pseudomonas putida strain genetically engineered for 1, 2, 3-trichloropropane bioremediation. Appl. Environ. Microbiol. 80, 5467-5476 (2014).
    • (2014) Appl. Environ. Microbiol. , vol.80 , pp. 5467-5476
    • Samin, G.1
  • 6
    • 68049085674 scopus 로고    scopus 로고
    • Evolution of efficient pathways for degradation of anthropogenic chemicals
    • Copley, S. D. Evolution of efficient pathways for degradation of anthropogenic chemicals. Nat. Chem. Biol. 5, 559-566 (2009).
    • (2009) Nat. Chem. Biol. , vol.5 , pp. 559-566
    • Copley, S.D.1
  • 7
    • 0031026361 scopus 로고    scopus 로고
    • The plasmid-located haloalkane dehalogenase gene from Rhodococcus rhodochrous NCIMB 13064
    • Kulakova, A. N., Larkin, M. J. & Kulakov, L. A. The plasmid-located haloalkane dehalogenase gene from Rhodococcus rhodochrous NCIMB 13064. Microbiology 143, 109-115 (1997).
    • (1997) Microbiology , vol.143 , pp. 109-115
    • Kulakova, A.N.1    Larkin, M.J.2    Kulakov, L.A.3
  • 8
    • 70349330482 scopus 로고    scopus 로고
    • Redesigning dehalogenase access tunnels as a strategy for degrading an anthropogenic substrate
    • Pavlova, M. et al. Redesigning dehalogenase access tunnels as a strategy for degrading an anthropogenic substrate. Nat. Chem. Biol. 5, 727-733 (2009).
    • (2009) Nat. Chem. Biol. , vol.5 , pp. 727-733
    • Pavlova, M.1
  • 9
    • 84155174672 scopus 로고    scopus 로고
    • Directed evolution strategies for enantiocomplementary haloalkane dehalogenases: From chemical waste to enantiopure building blocks
    • van Leeuwen, J. G., Wijma, H. J., Floor, R. J., van der Laan, J. M. & Janssen, D. B. Directed evolution strategies for enantiocomplementary haloalkane dehalogenases: from chemical waste to enantiopure building blocks. Chembiochem 13, 137-148 (2012).
    • (2012) Chembiochem , vol.13 , pp. 137-148
    • Van Leeuwen, J.G.1    Wijma, H.J.2    Floor, R.J.3    Van Der Laan, J.M.4    Janssen, D.B.5
  • 10
    • 0034891764 scopus 로고    scopus 로고
    • Halohydrin dehalogenases are structurally and mechanistically related to short-chain dehydrogenases/reductases
    • van Hylckama Vlieg, J. E. et al. Halohydrin dehalogenases are structurally and mechanistically related to short-chain dehydrogenases/reductases. J. Bacteriol. 183, 5058-5066 (2001).
    • (2001) J. Bacteriol. , vol.183 , pp. 5058-5066
    • Van Hylckama Vlieg, J.E.1
  • 11
    • 0030969017 scopus 로고    scopus 로고
    • Primary structure and catalytic mechanism of the epoxide hydrolase from Agrobacterium radiobacter AD1
    • Rink, R., Fennema, M., Smids, M., Dehmel, U. & Janssen, D. B. Primary structure and catalytic mechanism of the epoxide hydrolase from Agrobacterium radiobacter AD1. J. Biol. Chem. 272, 14650-14657 (1997).
    • (1997) J. Biol. Chem. , vol.272 , pp. 14650-14657
    • Rink, R.1    Fennema, M.2    Smids, M.3    Dehmel, U.4    Janssen, D.B.5
  • 12
    • 84896930502 scopus 로고    scopus 로고
    • Computer-assisted engineering of the synthetic pathway for biodegradation of a toxic persistent pollutant
    • Kurumbang, N. P. et al. Computer-assisted engineering of the synthetic pathway for biodegradation of a toxic persistent pollutant. ACS Synth. Biol. 3, 172-181 (2014).
    • (2014) ACS Synth. Biol. , vol.3 , pp. 172-181
    • Kurumbang, N.P.1
  • 13
    • 84954144197 scopus 로고    scopus 로고
    • Exacerbation of substrate toxicity by IPTG in Escherichia coli BL21(DE3) carrying a synthetic metabolic pathway
    • Dvorak, P. et al. Exacerbation of substrate toxicity by IPTG in Escherichia coli BL21(DE3) carrying a synthetic metabolic pathway. Microb. Cell Fact. 14, 201 (2015).
    • (2015) Microb. Cell Fact. , vol.14 , pp. 201
    • Dvorak, P.1
  • 15
    • 84964771581 scopus 로고    scopus 로고
    • The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis
    • Belda, E. et al. The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis. Environ. Microbiol. 18, 3403-3424 (2016).
    • (2016) Environ. Microbiol. , vol.18 , pp. 3403-3424
    • Belda, E.1
  • 16
    • 79961091830 scopus 로고    scopus 로고
    • Development of a method for markerless gene deletion in Pseudomonas putida
    • Graf, N. & Altenbuchner, J. Development of a method for markerless gene deletion in Pseudomonas putida. Appl. Environ. Microbiol. 77, 5549-5552 (2011).
    • (2011) Appl. Environ. Microbiol. , vol.77 , pp. 5549-5552
    • Graf, N.1    Altenbuchner, J.2
  • 17
    • 80053648189 scopus 로고    scopus 로고
    • Engineering multiple genomic deletions in Gram-negative bacteria: Analysis of the multiresistant antibiotic profile of Pseudomonas putida KT2440
    • Martínez-García, E. & de Lorenzo, V. Engineering multiple genomic deletions in Gram-negative bacteria: Analysis of the multiresistant antibiotic profile of Pseudomonas putida KT2440. Environ. Microbiol. 13, 2702-2716 (2011).
    • (2011) Environ. Microbiol. , vol.13 , pp. 2702-2716
    • Martínez-García, E.1    De Lorenzo, V.2
  • 18
    • 84960105587 scopus 로고    scopus 로고
    • Pseudomonas putida KT2440 markerless gene deletion using a combination of Red recombineering and Cre/loxP site-specific recombination
    • Luo, X. et al. Pseudomonas putida KT2440 markerless gene deletion using a combination of Red recombineering and Cre/loxP site-specific recombination. FEMS Microbiol. Lett. 363, fnw014 (2016).
    • (2016) FEMS Microbiol. Lett. , vol.363 , pp. fnw014
    • Luo, X.1
  • 19
    • 84973160909 scopus 로고    scopus 로고
    • Metabolic engineering of Pseudomonas putida KT2440 for complete mineralization of methyl parathion and-hexachlorocyclohexane
    • Gong, T. et al. Metabolic engineering of Pseudomonas putida KT2440 for complete mineralization of methyl parathion and-hexachlorocyclohexane. ACS Synth. Biol. 5, 434-442 (2016).
    • (2016) ACS Synth. Biol. , vol.5 , pp. 434-442
    • Gong, T.1
  • 20
    • 84898874640 scopus 로고    scopus 로고
    • Biotechnological domestication of pseudomonads using synthetic biology
    • Nikel, P. I., Martínez-García, E. & de Lorenzo, V. Biotechnological domestication of pseudomonads using synthetic biology. Nat. Rev. Microbiol. 12, 368-379 (2014).
    • (2014) Nat. Rev. Microbiol. , vol.12 , pp. 368-379
    • Nikel, P.I.1    Martínez-García, E.2    De Lorenzo, V.3
  • 21
    • 84949828112 scopus 로고    scopus 로고
    • Tn7-based device for calibrated heterologous gene expression in Pseudomonas putida
    • Zobel, S. et al. Tn7-based device for calibrated heterologous gene expression in Pseudomonas putida. ACS Synth. Biol. 4, 1341-1351 (2015).
    • (2015) ACS Synth. Biol. , vol.4 , pp. 1341-1351
    • Zobel, S.1
  • 22
    • 84871933044 scopus 로고    scopus 로고
    • The role of GlpR repressor in Pseudomonas putida KT2440 growth and PHA production from glycerol
    • Escapa, I. F., del Cerro, C., García, J. L. & Prieto, M. A. The role of GlpR repressor in Pseudomonas putida KT2440 growth and PHA production from glycerol. Environ. Microbiol. 15, 93-110 (2013).
    • (2013) Environ. Microbiol. , vol.15 , pp. 93-110
    • Escapa, I.F.1    Del Cerro, C.2    García, J.L.3    Prieto, M.A.4
  • 23
    • 33846557230 scopus 로고    scopus 로고
    • Recent developments and future prospects of Vitreoscilla hemoglobin application in metabolic engineering
    • Zhang, L. et al. Recent developments and future prospects of Vitreoscilla hemoglobin application in metabolic engineering. Biotechnol. Adv. 25, 123-136 (2007).
    • (2007) Biotechnol. Adv. , vol.25 , pp. 123-136
    • Zhang, L.1
  • 24
    • 84922573091 scopus 로고    scopus 로고
    • Recent applications of Vitreoscilla hemoglobin technology in bioproduct synthesis and bioremediation
    • Stark, B. C., Pagilla, K. R. & Dikshit, K. L. Recent applications of Vitreoscilla hemoglobin technology in bioproduct synthesis and bioremediation. Appl. Microbiol. Biotechnol. 99, 1627-1636 (2015).
    • (2015) Appl. Microbiol. Biotechnol. , vol.99 , pp. 1627-1636
    • Stark, B.C.1    Pagilla, K.R.2    Dikshit, K.L.3
  • 25
    • 20044366215 scopus 로고    scopus 로고
    • Improvement of bioremediation by Pseudomonas and Burkholderia by mutants of the Vitreoscilla hemoglobin gene (vgb) integrated into their chromosomes
    • Kim, Y., Webster, D. A. & Stark, B. C. Improvement of bioremediation by Pseudomonas and Burkholderia by mutants of the Vitreoscilla hemoglobin gene (vgb) integrated into their chromosomes. J. Ind. Microbiol. Biotechnol. 32, 148-154 (2005).
    • (2005) J. Ind. Microbiol. Biotechnol. , vol.32 , pp. 148-154
    • Kim, Y.1    Webster, D.A.2    Stark, B.C.3
  • 26
    • 84871436225 scopus 로고    scopus 로고
    • Engineering an anaerobic metabolic regime in Pseudomonas putida KT2440 for the anoxic biodegradation of 1, 3-dichloroprop-1-ene
    • Nikel, P. I. & de Lorenzo, V. Engineering an anaerobic metabolic regime in Pseudomonas putida KT2440 for the anoxic biodegradation of 1, 3-dichloroprop-1-ene. Metab. Eng. 15, 98-112 (2013).
    • (2013) Metab. Eng. , vol.15 , pp. 98-112
    • Nikel, P.I.1    De Lorenzo, V.2
  • 27
    • 34249856320 scopus 로고    scopus 로고
    • Stepwise formation of the bacterial flagellar system
    • Liu, R. & Ochman, H. Stepwise formation of the bacterial flagellar system. Proc. Natl. Acad. Sci. USA 104, 7116-7121 (2007).
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 7116-7121
    • Liu, R.1    Ochman, H.2
  • 29
    • 0028926047 scopus 로고
    • Energetics of bacterial growth: Balance of anabolic and catabolic reactions
    • Russell, J. B. & Cook, G. M. Energetics of bacterial growth: balance of anabolic and catabolic reactions. Microbiol. Rev. 59, 48-62 (1995).
    • (1995) Microbiol. Rev. , vol.59 , pp. 48-62
    • Russell, J.B.1    Cook, G.M.2
  • 30
    • 84949495478 scopus 로고    scopus 로고
    • Genetic programming of catalytic Pseudomonas putida biofilms for boosting biodegradation of haloalkanes
    • Benedetti, I., de Lorenzo, V. & Nikel, P. I. Genetic programming of catalytic Pseudomonas putida biofilms for boosting biodegradation of haloalkanes. Metab. Eng. 33, 109-118 (2016).
    • (2016) Metab. Eng. , vol.33 , pp. 109-118
    • Benedetti, I.1    De Lorenzo, V.2    Nikel, P.I.3
  • 31
    • 80054711585 scopus 로고    scopus 로고
    • Use of ceramic-based cell immobilization to produce 1, 3-propanediol from biodieselderived waste glycerol with Klebsiella pneumoniae
    • Gungormusler, M., Gonen, C. & Azbar, N. Use of ceramic-based cell immobilization to produce 1, 3-propanediol from biodieselderived waste glycerol with Klebsiella pneumoniae. J. Appl. Microbiol. 111, 1138-1147 (2011).
    • (2011) J. Appl. Microbiol. , vol.111 , pp. 1138-1147
    • Gungormusler, M.1    Gonen, C.2    Azbar, N.3
  • 33
    • 0028289983 scopus 로고
    • Small mobilizable multi-purpose cloning vectors derived from the Escherichia coli plasmids pK18 and pK19: Selection of defined deletions in the chromosome of Corynebacterium glutamicum
    • Schäfer, A. et al. Small mobilizable multi-purpose cloning vectors derived from the Escherichia coli plasmids pK18 and pK19: selection of defined deletions in the chromosome of Corynebacterium glutamicum. Gene 145, 69-73 (1994).
    • (1994) Gene , vol.145 , pp. 69-73
    • Schäfer, A.1
  • 34
    • 0029169596 scopus 로고
    • Improved transformation of Pseudomonas putida KT2440 by electroporation
    • Cho, J. H., Kim, E. K. & So, J. S. Improved transformation of Pseudomonas putida KT2440 by electroporation. Biotechnol. Tech. 9, 41-44 (1995).
    • (1995) Biotechnol. Tech. , vol.9 , pp. 41-44
    • Cho, J.H.1    Kim, E.K.2    So, J.S.3
  • 35
    • 84878390367 scopus 로고    scopus 로고
    • Chromosome integration of the Vitreoscilla hemoglobin gene (vgb) mediated by temperature-sensitive plasmid enhances-PGA production in Bacillus amyloliquefaciens
    • Zhang, W. et al. Chromosome integration of the Vitreoscilla hemoglobin gene (vgb) mediated by temperature-sensitive plasmid enhances-PGA production in Bacillus amyloliquefaciens. FEMS Microbiol. Lett. 343, 127-134 (2013).
    • (2013) FEMS Microbiol. Lett. , vol.343 , pp. 127-134
    • Zhang, W.1


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