-
1
-
-
0038497542
-
Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid
-
pmid: 13054692
-
J. D. Watson, F. H. Crick, Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid. Nature 171, 737–738 (1953). doi: 10.1038/171737a0; pmid: 13054692
-
(1953)
Nature
, vol.171
, pp. 737-738
-
-
Watson, J.D.1
Crick, F.H.2
-
2
-
-
0037992395
-
The structure of DNA in the nucleosome core
-
pmid: 12736678
-
T. J. Richmond, C. A. Davey, The structure of DNA in the nucleosome core. Nature 423, 145–150 (2003). doi: 10.1038/ nature01595; pmid: 12736678
-
(2003)
Nature
, vol.423
, pp. 145-150
-
-
Richmond, T.J.1
Davey, C.A.2
-
3
-
-
29244467484
-
Role of linker histone in chromatin structure and function: H1 stoichiometry and nucleosome repeat length
-
pmid: 16506093
-
C. L. Woodcock, A. I. Skoultchi, Y. Fan, Role of linker histone in chromatin structure and function: H1 stoichiometry and nucleosome repeat length. Chromosome Res. 14, 17–25 (2006). doi: 10.1007/s10577-005-1024-3; pmid: 16506093
-
(2006)
Chromosome Res.
, vol.14
, pp. 17-25
-
-
Woodcock, C.L.1
Skoultchi, A.I.2
Fan, Y.3
-
4
-
-
77955283768
-
Chromatin higher-order structure and dynamics
-
pmid: 20452954
-
C. L. Woodcock, R. P. Ghosh, Chromatin higher-order structure and dynamics. Cold Spring Harb. Perspect. Biol. 2, a000596 (2010). doi: 10.1101/cshperspect.a000596; pmid: 20452954
-
(2010)
Cold Spring Harb. Perspect. Biol.
, vol.2
, pp. a000596
-
-
Woodcock, C.L.1
Ghosh, R.P.2
-
5
-
-
84875190221
-
Genome architecture: Domain organization of interphase chromosomes
-
pmid: 23498936
-
W. A. Bickmore, B. van Steensel, Genome architecture: Domain organization of interphase chromosomes. Cell 152, 1270–1284 (2013). doi: 10.1016/j.cell.2013.02.001; pmid: 23498936
-
(2013)
Cell
, vol.152
, pp. 1270-1284
-
-
Bickmore, W.A.1
Van Steensel, B.2
-
6
-
-
0032564478
-
Nucleosomes, linker DNA, and linker histone form a unique structural motif that directs the higher-order folding and compaction of chromatin
-
pmid: 9826673
-
J. Bednar et al., Nucleosomes, linker DNA, and linker histone form a unique structural motif that directs the higher-order folding and compaction of chromatin. Proc. Natl. Acad. Sci. U.S.A. 95, 14173–14178 (1998). doi: 10.1073/ pnas.95.24.14173; pmid: 9826673
-
(1998)
Proc. Natl. Acad. Sci. U.S.A.
, vol.95
, pp. 14173-14178
-
-
Bednar, J.1
-
7
-
-
33646242052
-
EM measurements define the dimensions of the “30-nm” chromatin fiber: Evidence for a compact, interdigitated structure
-
pmid: 16617109
-
P. J. Robinson, L. Fairall, V. A. Huynh, D. Rhodes, EM measurements define the dimensions of the “30-nm” chromatin fiber: Evidence for a compact, interdigitated structure. Proc. Natl. Acad. Sci. U.S.A. 103, 6506–6511 (2006). doi: 10.1073/pnas.0601212103; pmid: 16617109
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 6506-6511
-
-
Robinson, P.J.1
Fairall, L.2
Huynh, V.A.3
Rhodes, D.4
-
8
-
-
21844436803
-
X-ray structure of a tetranucleosome and its implications for the chromatin fibre
-
pmid: 16001076
-
T. Schalch, S. Duda, D. F. Sargent, T. J. Richmond, X-ray structure of a tetranucleosome and its implications for the chromatin fibre. Nature 436, 138–141 (2005). doi: 10.1038/ nature03686; pmid: 16001076
-
(2005)
Nature
, vol.436
, pp. 138-141
-
-
Schalch, T.1
Duda, S.2
Sargent, D.F.3
Richmond, T.J.4
-
9
-
-
84899570718
-
Cryo-EM study of the chromatin fiber reveals a double helix twisted by tetranucleosomal units
-
pmid: 24763583
-
F. Song et al., Cryo-EM study of the chromatin fiber reveals a double helix twisted by tetranucleosomal units. Science 344, 376–380 (2014). doi: 10.1126/science.1251413; pmid: 24763583
-
(2014)
Science
, vol.344
, pp. 376-380
-
-
Song, F.1
-
10
-
-
0024319521
-
Large-scale chromatin structural domains within mitotic and interphase chromosomes in vivo and in vitro
-
pmid: 2476279
-
A. S. Belmont, M. B. Braunfeld, J. W. Sedat, D. A. Agard, Large-scale chromatin structural domains within mitotic and interphase chromosomes in vivo and in vitro. Chromosoma 98, 129–143 (1989). doi: 10.1007/BF00291049; pmid: 2476279
-
(1989)
Chromosoma
, vol.98
, pp. 129-143
-
-
Belmont, A.S.1
Braunfeld, M.B.2
Sedat, J.W.3
Agard, D.A.4
-
11
-
-
0028019457
-
Visualization of G1 chromosomes: A folded, twisted, supercoiled chromonema model of interphase chromatid structure
-
pmid: 7929576
-
A. S. Belmont, K. Bruce, Visualization of G1 chromosomes: A folded, twisted, supercoiled chromonema model of interphase chromatid structure. J. Cell Biol. 127, 287–302 (1994). doi: 10.1083/jcb.127.2.287; pmid: 7929576
-
(1994)
J. Cell Biol.
, vol.127
, pp. 287-302
-
-
Belmont, A.S.1
Bruce, K.2
-
12
-
-
0017281914
-
Ultrastructural features of chromatin nu bodies
-
pmid: 1035912
-
A. L. Olins, M. B. Senior, D. E. Olins, Ultrastructural features of chromatin nu bodies. J. Cell Biol. 68, 787–793 (1976). doi: 10.1083/jcb.68.3.787; pmid: 1035912
-
(1976)
J. Cell Biol.
, vol.68
, pp. 787-793
-
-
Olins, A.L.1
Senior, M.B.2
Olins, D.E.3
-
13
-
-
0016631410
-
Visualization of chromatin substructure: Upsilon bodies
-
pmid: 1150743
-
A. L. Olins, R. D. Carlson, D. E. Olins, Visualization of chromatin substructure: Upsilon bodies. J. Cell Biol. 64, 528–537 (1975). doi: 10.1083/jcb.64.3.528; pmid: 1150743
-
(1975)
J. Cell Biol.
, vol.64
, pp. 528-537
-
-
Olins, A.L.1
Carlson, R.D.2
Olins, D.E.3
-
14
-
-
0017583351
-
A direct approach to the structure of eukaryotic chromosomes
-
pmid: 98280
-
J. Sedat, L. Manuelidis, A direct approach to the structure of eukaryotic chromosomes. Cold Spring Harb. Symp. Quant. Biol. 42, 331–350 (1978). doi: 10.1101/ SQB.1978.042.01.035; pmid: 98280
-
(1978)
Cold Spring Harb. Symp. Quant. Biol.
, vol.42
, pp. 331-350
-
-
Sedat, J.1
Manuelidis, L.2
-
15
-
-
0022386283
-
Radial loops and helical coils coexist in metaphase chromosomes
-
pmid: 4016953
-
J. B. Rattner, C. C. Lin, Radial loops and helical coils coexist in metaphase chromosomes. Cell 42, 291–296 (1985). doi: 10.1016/S0092-8674(85)80124-0; pmid: 4016953
-
(1985)
Cell
, vol.42
, pp. 291-296
-
-
Rattner, J.B.1
Lin, C.C.2
-
16
-
-
0023368794
-
A three-dimensional approach to mitotic chromosome structure: Evidence for a complex hierarchical organization
-
pmid: 3112167
-
A. S. Belmont, J. W. Sedat, D. A. Agard, A three-dimensional approach to mitotic chromosome structure: Evidence for a complex hierarchical organization. J. Cell Biol. 105, 77–92 (1987). doi: 10.1083/jcb.105.1.77; pmid: 3112167
-
(1987)
J. Cell Biol.
, vol.105
, pp. 77-92
-
-
Belmont, A.S.1
Sedat, J.W.2
Agard, D.A.3
-
17
-
-
4644360416
-
Visualization of early chromosome condensation
-
pmid: 15353545
-
N. Kireeva, M. Lakonishok, I. Kireev, T. Hirano, A. S. Belmont, Visualization of early chromosome condensation. J. Cell Biol. 166, 775–785 (2004). doi: 10.1083/jcb.200406049; pmid: 15353545
-
(2004)
J. Cell Biol.
, vol.166
, pp. 775-785
-
-
Kireeva, N.1
Lakonishok, M.2
Kireev, I.3
Hirano, T.4
Belmont, A.S.5
-
18
-
-
11144321432
-
Organization of chromatin in the interphase mammalian cell
-
pmid: 15629642
-
H. Dehghani, G. Dellaire, D. P. Bazett-Jones, Organization of chromatin in the interphase mammalian cell. Micron 36, 95–108 (2005). doi: 10.1016/j.micron.2004.10.003; pmid: 15629642
-
(2005)
Micron
, vol.36
, pp. 95-108
-
-
Dehghani, H.1
Dellaire, G.2
Bazett-Jones, D.P.3
-
19
-
-
58149401194
-
Analysis of cryo-electron microscopy images does not support the existence of 30-nm chromatin fibers in mitotic chromosomes in situ
-
pmid: 19064912
-
M. Eltsov, K. M. Maclellan, K. Maeshima, A. S. Frangakis, J. Dubochet, Analysis of cryo-electron microscopy images does not support the existence of 30-nm chromatin fibers in mitotic chromosomes in situ. Proc. Natl. Acad. Sci. U.S.A. 105, 19732–19737 (2008). doi: 10.1073/pnas.0810057105; pmid: 19064912
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 19732-19737
-
-
Eltsov, M.1
Maclellan, K.M.2
Maeshima, K.3
Frangakis, A.S.4
Dubochet, J.5
-
20
-
-
0022726854
-
Cryo-electron microscopy of vitrified chromosomes in situ
-
pmid: 3755397
-
A. W. McDowall, J. M. Smith, J. Dubochet, Cryo-electron microscopy of vitrified chromosomes in situ. EMBO J. 5, 1395–1402 (1986). pmid: 3755397
-
(1986)
EMBO J.
, vol.5
, pp. 1395-1402
-
-
McDowall, A.W.1
Smith, J.M.2
Dubochet, J.3
-
21
-
-
84859421494
-
Human mitotic chromosomes consist predominantly of irregularly folded nucleosome fibres without a 30-nm chromatin structure
-
pmid: 22343941
-
Y. Nishino et al., Human mitotic chromosomes consist predominantly of irregularly folded nucleosome fibres without a 30-nm chromatin structure. EMBO J. 31, 1644–1653 (2012). doi: 10.1038/emboj.2012.35; pmid: 22343941
-
(2012)
EMBO J.
, vol.31
, pp. 1644-1653
-
-
Nishino, Y.1
-
22
-
-
77956272401
-
Global chromatin architecture reflects pluripotency and lineage commitment in the early mouse embryo
-
pmid: 20479880
-
K. Ahmed et al., Global chromatin architecture reflects pluripotency and lineage commitment in the early mouse embryo. PLOS ONE 5, e10531 (2010). doi: 10.1371/journal. pone.0010531; pmid: 20479880
-
(2010)
PLOS ONE
, vol.5
, pp. e10531
-
-
Ahmed, K.1
-
23
-
-
84868690351
-
Open and closed domains in the mouse genome are configured as 10-nm chromatin fibres
-
pmid: 22986547
-
E. Fussner et al., Open and closed domains in the mouse genome are configured as 10-nm chromatin fibres. EMBO Rep. 13, 992–996 (2012). doi: 10.1038/embor.2012.139; pmid: 22986547
-
(2012)
EMBO Rep.
, vol.13
, pp. 992-996
-
-
Fussner, E.1
-
24
-
-
84959419478
-
Visualizing the molecular sociology at the HeLa cell nuclear periphery
-
pmid: 26917770
-
J. Mahamid et al., Visualizing the molecular sociology at the HeLa cell nuclear periphery. Science 351, 969–972 (2016). doi: 10.1126/science.aad8857; pmid: 26917770
-
(2016)
Science
, vol.351
, pp. 969-972
-
-
Mahamid, J.1
-
25
-
-
30044447160
-
Cryoelectron microscopy of vitrified sections: A new challenge for the analysis of functional nuclear architecture
-
pmid: 16328430
-
C. Bouchet-Marquis, J. Dubochet, S. Fakan, Cryoelectron microscopy of vitrified sections: A new challenge for the analysis of functional nuclear architecture. Histochem. Cell Biol. 125, 43–51 (2006). doi: 10.1007/s00418-005-0093-x; pmid: 16328430
-
(2006)
Histochem. Cell Biol.
, vol.125
, pp. 43-51
-
-
Bouchet-Marquis, C.1
Dubochet, J.2
Fakan, S.3
-
26
-
-
77958569747
-
Condensed mitotic chromosome structure at nanometer resolution using PALM and EGFP- Histones
-
pmid: 20856676
-
A. Matsuda et al., Condensed mitotic chromosome structure at nanometer resolution using PALM and EGFP- histones. PLOS ONE 5, e12768 (2010). doi: 10.1371/journal. pone.0012768; pmid: 20856676
-
(2010)
PLOS ONE
, vol.5
, pp. e12768
-
-
Matsuda, A.1
-
27
-
-
45549091077
-
Subdiffraction multicolor imaging of the nuclear periphery with 3D structured illumination microscopy
-
pmid: 18535242
-
L. Schermelleh et al., Subdiffraction multicolor imaging of the nuclear periphery with 3D structured illumination microscopy. Science 320, 1332–1336 (2008). doi: 10.1126/ science.1156947; pmid: 18535242
-
(2008)
Science
, vol.320
, pp. 1332-1336
-
-
Schermelleh, L.1
-
28
-
-
84900824181
-
Three-dimensional super-resolution microscopy of the inactive X chromosome territory reveals a collapse of its active nuclear compartment harboring distinct Xist RNA foci
-
pmid: 25057298
-
D. Smeets et al., Three-dimensional super-resolution microscopy of the inactive X chromosome territory reveals a collapse of its active nuclear compartment harboring distinct Xist RNA foci. Epigenetics Chromatin 7, 8 (2014). doi: 10.1186/1756-8935-7-8; pmid: 25057298
-
(2014)
Epigenetics Chromatin
, vol.7
, pp. 8
-
-
Smeets, D.1
-
29
-
-
84857032212
-
Super-resolution fluorescence imaging of chromosomal DNA
-
pmid: 22226957
-
P. J. Zessin, K. Finan, M. Heilemann, Super-resolution fluorescence imaging of chromosomal DNA. J. Struct. Biol. 177, 344–348 (2012). doi: 10.1016/j.jsb.2011.12.015; pmid: 22226957
-
(2012)
J. Struct. Biol.
, vol.177
, pp. 344-348
-
-
Zessin, P.J.1
Finan, K.2
Heilemann, M.3
-
30
-
-
84924559967
-
Chromatin fibers are formed by heterogeneous groups of nucleosomes in vivo
-
pmid: 25768910
-
M. A. Ricci, C. Manzo, M. F. García-Parajo, M. Lakadamyali, M. P. Cosma, Chromatin fibers are formed by heterogeneous groups of nucleosomes in vivo. Cell 160, 1145–1158 (2015). doi: 10.1016/j.cell.2015.01.054; pmid: 25768910
-
(2015)
Cell
, vol.160
, pp. 1145-1158
-
-
Ricci, M.A.1
Manzo, C.2
García-Parajo, M.F.3
Lakadamyali, M.4
Cosma, M.P.5
-
31
-
-
84955290042
-
Super-resolution imaging reveals distinct chromatin folding for different epigenetic states
-
pmid: 26760202
-
A. N. Boettiger et al., Super-resolution imaging reveals distinct chromatin folding for different epigenetic states. Nature 529, 418–422 (2016). doi: 10.1038/nature16496; pmid: 26760202
-
(2016)
Nature
, vol.529
, pp. 418-422
-
-
Boettiger, A.N.1
-
32
-
-
0022967955
-
A stable lead by modification of Sato’s method
-
pmid: 2440973
-
T. Hanaichi et al., A stable lead by modification of Sato’s method. J. Electron Microsc. (Tokyo) 35, 304–306 (1986). pmid: 2440973
-
(1986)
J. Electron Microsc. (Tokyo)
, vol.35
, pp. 304-306
-
-
Hanaichi, T.1
-
33
-
-
0000523688
-
Staining of tissue sections for electron microscopy with heavy metals
-
pmid: 13610936
-
M. L. Watson, Staining of tissue sections for electron microscopy with heavy metals. J. Biophys. Biochem. Cytol. 4, 727–730 (1958). doi: 10.1083/jcb.4.6.727; pmid: 13610936
-
(1958)
J. Biophys. Biochem. Cytol.
, vol.4
, pp. 727-730
-
-
Watson, M.L.1
-
34
-
-
0001032086
-
Preferential staining of nucleic acid-containing structures for electron microscopy
-
pmid: 14450292
-
H. E. Huxley, G. Zubay, Preferential staining of nucleic acid-containing structures for electron microscopy. J. Biophys. Biochem. Cytol. 11, 273–296 (1961). doi: 10.1083/jcb.11.2.273; pmid: 14450292
-
(1961)
J. Biophys. Biochem. Cytol.
, vol.11
, pp. 273-296
-
-
Huxley, H.E.1
Zubay, G.2
-
35
-
-
0015847493
-
Mise en évidence de l’ADN et des polysaccharides à l’aide d’un nouveau réactif “de type Schiff”
-
pmid: 4198810
-
R. Cogliati, A. Gautier, Mise en évidence de l’ADN et des polysaccharides à l’aide d’un nouveau réactif “de type Schiff.” C. R. Acad. Sci. Hebd. Seances Acad. Sci. D 276, 3041–3044 (1973). pmid: 4198810
-
(1973)
C. R. Acad. Sci. Hebd. Seances Acad. Sci. D
, vol.276
, pp. 3041-3044
-
-
Cogliati, R.1
Gautier, A.2
-
36
-
-
0024598768
-
Synthesis of a more stable osmium ammine electron-dense DNA stain
-
pmid: 2465337
-
A. L. Olins, B. A. Moyer, S. H. Kim, D. P. Allison, Synthesis of a more stable osmium ammine electron-dense DNA stain. J. Histochem. Cytochem. 37, 395–398 (1989). doi: 10.1177/ 37.3.2465337; pmid: 2465337
-
(1989)
J. Histochem. Cytochem.
, vol.37
, pp. 395-398
-
-
Olins, A.L.1
Moyer, B.A.2
Kim, S.H.3
Allison, D.P.4
-
37
-
-
34447634290
-
Control and selectivity of photosensitized singlet oxygen production: Challenges in complex biological systems
-
pmid: 17323398
-
E. Cló, J. W. Snyder, P. R. Ogilby, K. V. Gothelf, Control and selectivity of photosensitized singlet oxygen production: Challenges in complex biological systems. ChemBioChem 8, 475–481 (2007). doi: 10.1002/cbic.200600454; pmid: 17323398
-
(2007)
Chembiochem
, vol.8
, pp. 475-481
-
-
Cló, E.1
Snyder, J.W.2
Ogilby, P.R.3
Gothelf, K.V.4
-
38
-
-
0025295136
-
Photoconversion of fluorescent retrograde tracers
-
pmid: 1695999
-
M. Bentivoglio, H. S. Su, Photoconversion of fluorescent retrograde tracers. Neurosci. Lett. 113, 127–133 (1990). doi: 10.1016/0304-3940(90)90291-G; pmid: 1695999
-
(1990)
Neurosci. Lett.
, vol.113
, pp. 127-133
-
-
Bentivoglio, M.1
Su, H.S.2
-
39
-
-
0027989511
-
Fluorescence photooxidation with eosin: A method for high resolution immunolocalization and in situ hybridization detection for light and electron microscopy
-
pmid: 7519623
-
T. J. Deerinck et al., Fluorescence photooxidation with eosin: A method for high resolution immunolocalization and in situ hybridization detection for light and electron microscopy. J. Cell Biol. 126, 901–910 (1994). doi: 10.1083/ jcb.126.4.901; pmid: 7519623
-
(1994)
J. Cell Biol.
, vol.126
, pp. 901-910
-
-
Deerinck, T.J.1
-
40
-
-
84947487599
-
Visualizing viral protein structures in cells using genetic probes for correlated light and electron microscopy
-
pmid: 26066760
-
H. D. Ou, T. J. Deerinck, E. Bushong, M. H. Ellisman, C. C. O’Shea, Visualizing viral protein structures in cells using genetic probes for correlated light and electron microscopy. Methods 90, 39–48 (2015). doi: 10.1016/j.ymeth.2015.06.002; pmid: 26066760
-
(2015)
Methods
, vol.90
, pp. 39-48
-
-
Ou, H.D.1
Deerinck, T.J.2
Bushong, E.3
Ellisman, M.H.4
O’Shea, C.C.5
-
41
-
-
0013895415
-
The early stages of absorption of injected horseradish peroxidase in the proximal tubules of mouse kidney: Ultrastructural cytochemistry by a new technique
-
pmid: 5962951
-
R. C. Graham Jr., M. J. Karnovsky, The early stages of absorption of injected horseradish peroxidase in the proximal tubules of mouse kidney: Ultrastructural cytochemistry by a new technique. J. Histochem. Cytochem. 14, 291–302 (1966). doi: 10.1177/14.4.291; pmid: 5962951
-
(1966)
J. Histochem. Cytochem.
, vol.14
, pp. 291-302
-
-
Graham, R.C.1
Karnovsky, M.J.2
-
42
-
-
79955504165
-
A genetically encoded tag for correlated light and electron microscopy of intact cells, tissues, and organisms
-
pmid: 21483721
-
X. Shu et al., A genetically encoded tag for correlated light and electron microscopy of intact cells, tissues, and organisms. PLOS Biol. 9, e1001041 (2011). doi: 10.1371/journal. pbio.1001041; pmid: 21483721
-
(2011)
PLOS Biol.
, vol.9
, pp. e1001041
-
-
Shu, X.1
-
43
-
-
84867564497
-
A structural basis for the assembly and functions of a viral polymer that inactivates multiple tumor suppressors
-
pmid: 23063122
-
H. D. Ou et al., A structural basis for the assembly and functions of a viral polymer that inactivates multiple tumor suppressors. Cell 151, 304–319 (2012). doi: 10.1016/ j.cell.2012.08.035; pmid: 23063122
-
(2012)
Cell
, vol.151
, pp. 304-319
-
-
Ou, H.D.1
-
44
-
-
0030057562
-
Improving the efficacy of fluorescent labeling for histological tracking of cells in early mammalian and avian embryos
-
pmid: 8838429
-
H. J. Garton, G. C. Schoenwolf, Improving the efficacy of fluorescent labeling for histological tracking of cells in early mammalian and avian embryos. Anat. Rec. 244, 112–117 (1996). doi: 10.1002/(SICI)1097-0185(199601)244:1〈112::AIDAR11〉3.0.CO;2-S; pmid: 8838429
-
(1996)
Anat. Rec.
, vol.244
, pp. 112-117
-
-
Garton, H.J.1
Schoenwolf, G.C.2
-
45
-
-
0026448285
-
Electron microscopic analysis of fluorescent neuronal labeling after photoconversion
-
pmid: 1283435
-
G. Balercia, S. Chen, M. Bentivoglio, Electron microscopic analysis of fluorescent neuronal labeling after photoconversion. J. Neurosci. Methods 45, 87–98 (1992). doi: 10.1016/ 0165-0270(92)90046-G; pmid: 1283435
-
(1992)
J. Neurosci. Methods
, vol.45
, pp. 87-98
-
-
Balercia, G.1
Chen, S.2
Bentivoglio, M.3
-
46
-
-
55249116998
-
DRAQ5 labeling of nuclear DNA in live and fixed cells
-
P. J. Smith, M. Wiltshire, R. J. Errington, DRAQ5 labeling of nuclear DNA in live and fixed cells. Current Protoc. Cytom. 28, 7.25.1–7.21.11 (2004). .doi: 10.1002/0471142956.cy0725s28
-
(2004)
Current Protoc. Cytom.
, vol.28
, pp. 7.25.1-7.21.11
-
-
Smith, P.J.1
Wiltshire, M.2
Errington, R.J.3
-
47
-
-
33749146554
-
Spectral analysis of the DNA targeting bisalkylaminoanthraquinone DRAQ5 in intact living cells
-
pmid: 16969814
-
K. L. Njoh et al., Spectral analysis of the DNA targeting bisalkylaminoanthraquinone DRAQ5 in intact living cells. Cytometry A 69A, 805–814 (2006). doi: 10.1002/cyto. a.20308; pmid: 16969814
-
(2006)
Cytometry A
, vol.69 A
, pp. 805-814
-
-
Njoh, K.L.1
-
48
-
-
24944488016
-
DNA labeling in living cells
-
pmid: 16082711
-
R. M. Martin, H. Leonhardt, M. C. Cardoso, DNA labeling in living cells. Cytometry A 67A, 45–52 (2005). doi: 10.1002/ cyto.a.20172; pmid: 16082711
-
(2005)
Cytometry A
, vol.67 A
, pp. 45-52
-
-
Martin, R.M.1
Leonhardt, H.2
Cardoso, M.C.3
-
49
-
-
78650656887
-
Short exposure to the DNA intercalator DRAQ5 dislocates the transcription machinery and induces cell death
-
pmid: 21175643
-
E. Richard et al., Short exposure to the DNA intercalator DRAQ5 dislocates the transcription machinery and induces cell death. Photochem. Photobiol. 87, 256–261 (2011). doi: 10.1111/ j.1751-1097.2010.00852.x; pmid: 21175643
-
(2011)
Photochem. Photobiol.
, vol.87
, pp. 256-261
-
-
Richard, E.1
-
50
-
-
44949098358
-
Interaction of a DNA intercalator DRAQ5, and a minor groove binder SYTO17, with chromatin in live cells—influence on chromatin organization and histone-DNA interactions
-
pmid: 18459157
-
K. Wojcik, J. W. Dobrucki, Interaction of a DNA intercalator DRAQ5, and a minor groove binder SYTO17, with chromatin in live cells—influence on chromatin organization and histone-DNA interactions. Cytometry A 73A, 555–562 (2008). doi: 10.1002/cyto.a.20573; pmid: 18459157
-
(2008)
Cytometry A
, vol.73 A
, pp. 555-562
-
-
Wojcik, K.1
Dobrucki, J.W.2
-
52
-
-
0016252660
-
Observations on nucleolar staining with osmium tetroxide
-
pmid: 4136260
-
J. C. Stockert, O. D. Colman, Observations on nucleolar staining with osmium tetroxide. Experientia 30, 751–752 (1974). doi: 10.1007/BF01924164; pmid: 4136260
-
(1974)
Experientia
, vol.30
, pp. 751-752
-
-
Stockert, J.C.1
Colman, O.D.2
-
54
-
-
0031422417
-
Dual-axis tomography: An approach with alignment methods that preserve resolution
-
pmid: 9441937
-
D. N. Mastronarde, Dual-axis tomography: An approach with alignment methods that preserve resolution. J. Struct. Biol. 120, 343–352 (1997). doi: 10.1006/jsbi.1997.3919; pmid: 9441937
-
(1997)
J. Struct. Biol.
, vol.120
, pp. 343-352
-
-
Mastronarde, D.N.1
-
55
-
-
85036582843
-
3D reconstruction of biological structures: Automated procedures for alignment and reconstruction of multiple tilt series in electron tomography
-
pmid: 27547706
-
S. Phan et al., 3D reconstruction of biological structures: Automated procedures for alignment and reconstruction of multiple tilt series in electron tomography. Adv Struct Chem Imaging 2, 8 (2017). doi: 10.1186/s40679-016-0021-2; pmid: 27547706
-
(2017)
Adv Struct Chem Imaging
, vol.2
, pp. 8
-
-
Phan, S.1
-
56
-
-
84866984821
-
TxBR montage reconstruction for large field electron tomography
-
pmid: 22749959
-
S. Phan et al., TxBR montage reconstruction for large field electron tomography. J. Struct. Biol. 180, 154–164 (2012). doi: 10.1016/j.jsb.2012.06.006; pmid: 22749959
-
(2012)
J. Struct. Biol.
, vol.180
, pp. 154-164
-
-
Phan, S.1
-
57
-
-
33646070293
-
Transform-based backprojection for volume reconstruction of large format electron microscope tilt series
-
pmid: 16542854
-
A. Lawrence, J. C. Bouwer, G. Perkins, M. H. Ellisman, Transform-based backprojection for volume reconstruction of large format electron microscope tilt series. J. Struct. Biol. 154, 144–167 (2006). doi: 10.1016/j.jsb.2005.12.012; pmid: 16542854
-
(2006)
J. Struct. Biol.
, vol.154
, pp. 144-167
-
-
Lawrence, A.1
Bouwer, J.C.2
Perkins, G.3
Ellisman, M.H.4
-
58
-
-
0012934579
-
-
S. H. Paul, Ed. Academic Press Professional, San Diego, CA
-
K. Zuiderveld, in Graphics Gems IV, S. H. Paul, Ed. (Academic Press Professional, San Diego, CA, 1994), pp. 474–485.
-
(1994)
Graphics Gems IV
, pp. 474-485
-
-
Zuiderveld, K.1
-
59
-
-
0032090603
-
An iterative algorithm for minimum cross entropy thresholding
-
C. H. Li, P. K. S. Tam, An iterative algorithm for minimum cross entropy thresholding. Pattern Recognit. Lett. 19, 771–776 (1998). doi: 10.1016/S0167-8655(98)00057-9
-
(1998)
Pattern Recognit. Lett.
, vol.19
, pp. 771-776
-
-
Li, C.H.1
Tam, P.K.S.2
-
60
-
-
0018306059
-
A threshold selection method from gray-level histograms
-
N. Otsu, A threshold selection method from gray-level histograms. IEEE Trans. Syst. Man Cybern. 9, 62–66 (1979). doi: 10.1109/TSMC.1979.4310076
-
(1979)
IEEE Trans. Syst. Man Cybern.
, vol.9
, pp. 62-66
-
-
Otsu, N.1
-
61
-
-
84882878737
-
-
C. D. Hansen, C. R. Johnson, Eds. Butterworth-Heinemann, Burlington, MA
-
D. Stalling, M. Westerhoff, H.-C. Hege, in The Visualization Handbook, C. D. Hansen, C. R. Johnson, Eds. (Butterworth-Heinemann, Burlington, MA, 2005), pp. 749–767.
-
(2005)
The Visualization Handbook
, pp. 749-767
-
-
Stalling, D.1
Westerhoff, M.2
Hege, H.-C.3
-
62
-
-
0019197619
-
The higher order structure of chicken erythrocyte chromosomes in vivo
-
pmid: 7442809
-
J. P. Langmore, C. Schutt, The higher order structure of chicken erythrocyte chromosomes in vivo. Nature 288, 620–622 (1980). doi: 10.1038/288620a0; pmid: 7442809
-
(1980)
Nature
, vol.288
, pp. 620-622
-
-
Langmore, J.P.1
Schutt, C.2
-
63
-
-
80054774248
-
Evidence for short-range helical order in the 30-nm chromatin fibers of erythrocyte nuclei
-
pmid: 21969536
-
M. P. Scheffer, M. Eltsov, A. S. Frangakis, Evidence for short-range helical order in the 30-nm chromatin fibers of erythrocyte nuclei. Proc. Natl. Acad. Sci. U.S.A. 108, 16992–16997 (2011). doi: 10.1073/pnas.1108268108; pmid: 21969536
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 16992-16997
-
-
Scheffer, M.P.1
Eltsov, M.2
Frangakis, A.S.3
-
64
-
-
77950517260
-
Evolutionary tabu search strategies for the simultaneous registration of multiple atomic structures in cryo-EM reconstructions
-
pmid: 20056148
-
M. Rusu, S. Birmanns, Evolutionary tabu search strategies for the simultaneous registration of multiple atomic structures in cryo-EM reconstructions. J. Struct. Biol. 170, 164–171 (2010). doi: 10.1016/j.jsb.2009.12.028; pmid: 20056148
-
(2010)
J. Struct. Biol.
, vol.170
, pp. 164-171
-
-
Rusu, M.1
Birmanns, S.2
-
65
-
-
79851508025
-
Using Sculptor and Situs for simultaneous assembly of atomic components into low-resolution shapes
-
pmid: 21078392
-
S. Birmanns, M. Rusu, W. Wriggers, Using Sculptor and Situs for simultaneous assembly of atomic components into low-resolution shapes. J. Struct. Biol. 173, 428–435 (2011). doi: 10.1016/j.jsb.2010.11.002; pmid: 21078392
-
(2011)
J. Struct. Biol.
, vol.173
, pp. 428-435
-
-
Birmanns, S.1
Rusu, M.2
Wriggers, W.3
-
67
-
-
84939574342
-
Structural mechanisms of nucleosome recognition by linker histones
-
pmid: 26212454
-
B. R. Zhou et al., Structural mechanisms of nucleosome recognition by linker histones. Mol. Cell 59, 628–638 (2015). doi: 10.1016/j.molcel.2015.06.025; pmid: 26212454
-
(2015)
Mol. Cell
, vol.59
, pp. 628-638
-
-
Zhou, B.R.1
-
68
-
-
84961972153
-
High mobility group (HMG) proteins: Modulators of chromatin structure and DNA repair in mammalian cells
-
pmid: 26411874
-
R. Reeves, High mobility group (HMG) proteins: Modulators of chromatin structure and DNA repair in mammalian cells. DNA Repair (Amst.) 36, 122–136 (2015). doi: 10.1016/ j.dnarep.2015.09.015; pmid: 26411874
-
(2015)
DNA Repair (amst.)
, vol.36
, pp. 122-136
-
-
Reeves, R.1
-
69
-
-
0017652886
-
The structure of histone-depleted metaphase chromosomes
-
pmid: 922894
-
J. R. Paulson, U. K. Laemmli, The structure of histone-depleted metaphase chromosomes. Cell 12, 817–828 (1977). doi: 10.1016/0092-8674(77)90280-X; pmid: 922894
-
(1977)
Cell
, vol.12
, pp. 817-828
-
-
Paulson, J.R.1
Laemmli, U.K.2
-
70
-
-
34347247308
-
The three-dimensional structure of in vitro reconstituted Xenopus laevis chromosomes by EM tomography
-
pmid: 17333236
-
P. König, M. B. Braunfeld, J. W. Sedat, D. A. Agard, The three-dimensional structure of in vitro reconstituted Xenopus laevis chromosomes by EM tomography. Chromosoma 116, 349–372 (2007). doi: 10.1007/s00412-007-0101-0; pmid: 17333236
-
(2007)
Chromosoma
, vol.116
, pp. 349-372
-
-
König, P.1
Braunfeld, M.B.2
Sedat, J.W.3
Agard, D.A.4
-
71
-
-
0013968931
-
Isolation and characterization of human metaphase chromosomes
-
pmid: 5230305
-
N. P. Salzman, D. E. Moore, J. Mendelsohn, Isolation and characterization of human metaphase chromosomes. Proc. Natl. Acad. Sci. U.S.A. 56, 1449–1456 (1966). doi: 10.1073/ pnas.56.5.1449; pmid: 5230305
-
(1966)
Proc. Natl. Acad. Sci. U.S.A.
, vol.56
, pp. 1449-1456
-
-
Salzman, N.P.1
Moore, D.E.2
Mendelsohn, J.3
-
72
-
-
0022384496
-
Unstained microtubules studied by cryo-electron microscopy: Substructure, supertwist and disassembly
-
pmid: 3981631
-
E. M. Mandelkow, E. Mandelkow, Unstained microtubules studied by cryo-electron microscopy: Substructure, supertwist and disassembly. J. Mol. Biol. 181, 123–135 (1985). doi: 10.1016/0022-2836(85)90330-4; pmid: 3981631
-
(1985)
J. Mol. Biol.
, vol.181
, pp. 123-135
-
-
Mandelkow, E.M.1
Mandelkow, E.2
-
73
-
-
78650194806
-
Nanotribology results show that DNA forms a mechanically resistant 2D network in metaphase chromatin plates
-
pmid: 21156137
-
I. Gállego, G. Oncins, X. Sisquella, X. Fernàndez-Busquets, J. R. Daban, Nanotribology results show that DNA forms a mechanically resistant 2D network in metaphase chromatin plates. Biophys. J. 99, 3951–3958 (2010). doi: 10.1016/ j.bpj.2010.11.015; pmid: 21156137
-
(2010)
Biophys. J.
, vol.99
, pp. 3951-3958
-
-
Gállego, I.1
Oncins, G.2
Sisquella, X.3
Fernàndez-Busquets, X.4
Daban, J.R.5
-
74
-
-
62949147085
-
Dense chromatin plates in metaphase chromosomes
-
pmid: 19189102
-
I. Gállego, P. Castro-Hartmann, J. M. Caravaca, S. Caño, J. R. Daban, Dense chromatin plates in metaphase chromosomes. Eur. Biophys. J. 38, 503–522 (2009). doi: 10.1007/s00249-008-0401-1; pmid: 19189102
-
(2009)
Eur. Biophys. J.
, vol.38
, pp. 503-522
-
-
Gállego, I.1
Castro-Hartmann, P.2
Caravaca, J.M.3
Caño, S.4
Daban, J.R.5
-
75
-
-
84964237877
-
Click-EM for imaging metabolically tagged nonprotein biomolecules
-
pmid: 27110681
-
J. T. Ngo et al., Click-EM for imaging metabolically tagged nonprotein biomolecules. Nat. Chem. Biol. 12, 459–465 (2016). doi: 10.1038/nchembio.2076; pmid: 27110681
-
(2016)
Nat. Chem. Biol.
, vol.12
, pp. 459-465
-
-
Ngo, J.T.1
-
76
-
-
84904172931
-
Chromatin as dynamic 10-nm fibers
-
pmid: 24737122
-
K. Maeshima, R. Imai, S. Tamura, T. Nozaki, Chromatin as dynamic 10-nm fibers. Chromosoma 123, 225–237 (2014). doi: 10.1007/s00412-014-0460-2; pmid: 24737122
-
(2014)
Chromosoma
, vol.123
, pp. 225-237
-
-
Maeshima, K.1
Imai, R.2
Tamura, S.3
Nozaki, T.4
-
77
-
-
79551685899
-
Nucleosome structural studies
-
pmid: 21176878
-
S. Tan, C. A. Davey, Nucleosome structural studies. Curr. Opin. Struct. Biol. 21, 128–136 (2011). doi: 10.1016/j.sbi.2010.11.006; pmid: 21176878
-
(2011)
Curr. Opin. Struct. Biol.
, vol.21
, pp. 128-136
-
-
Tan, S.1
Davey, C.A.2
-
78
-
-
84899415723
-
Every amino acid matters: Essential contributions of histone variants to mammalian development and disease
-
pmid: 24614311
-
I. Maze, K. M. Noh, A. A. Soshnev, C. D. Allis, Every amino acid matters: Essential contributions of histone variants to mammalian development and disease. Nat. Rev. Genet. 15, 259–271 (2014). doi: 10.1038/nrg3673; pmid: 24614311
-
(2014)
Nat. Rev. Genet.
, vol.15
, pp. 259-271
-
-
Maze, I.1
Noh, K.M.2
Soshnev, A.A.3
Allis, C.D.4
-
79
-
-
0033664380
-
Crystal structure of a nucleosome core particle containing the variant histone H2A.Z
-
pmid: 11101893
-
R. K. Suto, M. J. Clarkson, D. J. Tremethick, K. Luger, Crystal structure of a nucleosome core particle containing the variant histone H2A.Z. Nat. Struct. Biol. 7, 1121–1124 (2000). doi: 10.1038/81971; pmid: 11101893
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 1121-1124
-
-
Suto, R.K.1
Clarkson, M.J.2
Tremethick, D.J.3
Luger, K.4
-
80
-
-
84901840684
-
Chromatin fiber polymorphism triggered by variations of DNA linker lengths
-
pmid: 24847063
-
R. Collepardo-Guevara, T. Schlick, Chromatin fiber polymorphism triggered by variations of DNA linker lengths. Proc. Natl. Acad. Sci. U.S.A. 111, 8061–8066 (2014). doi: 10.1073/pnas.1315872111; pmid: 24847063
-
(2014)
Proc. Natl. Acad. Sci. U.S.A.
, vol.111
, pp. 8061-8066
-
-
Collepardo-Guevara, R.1
Schlick, T.2
-
81
-
-
84857340459
-
Toward convergence of experimental studies and theoretical modeling of the chromatin fiber
-
pmid: 22157002
-
T. Schlick, J. Hayes, S. Grigoryev, Toward convergence of experimental studies and theoretical modeling of the chromatin fiber. J. Biol. Chem. 287, 5183–5191 (2012). doi: 10.1074/jbc.R111.305763; pmid: 22157002
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 5183-5191
-
-
Schlick, T.1
Hayes, J.2
Grigoryev, S.3
-
82
-
-
33645286183
-
Polymer chain models of DNA and chromatin
-
pmid: 16547610
-
J. Langowski, Polymer chain models of DNA and chromatin. Eur. Phys. J. E Soft Matter 19, 241–249 (2006). doi: 10.1140/ epje/i2005-10067-9; pmid: 16547610
-
(2006)
Eur. Phys. J. E Soft Matter
, vol.19
, pp. 241-249
-
-
Langowski, J.1
-
83
-
-
79952807125
-
Chromatin folding—from biology to polymer models and back
-
pmid: 21378305
-
M. Tark-Dame, R. van Driel, D. W. Heermann, Chromatin folding—from biology to polymer models and back. J. Cell Sci. 124, 839–845 (2011). doi: 10.1242/jcs.077628; pmid: 21378305
-
(2011)
J. Cell Sci.
, vol.124
, pp. 839-845
-
-
Tark-Dame, M.1
Van Driel, R.2
Heermann, D.W.3
-
84
-
-
9344239339
-
Long-range compaction and flexibility of interphase chromatin in budding yeast analyzed by high-resolution imaging techniques
-
pmid: 15545610
-
K. Bystricky, P. Heun, L. Gehlen, J. Langowski, S. M. Gasser, Long-range compaction and flexibility of interphase chromatin in budding yeast analyzed by high-resolution imaging techniques. Proc. Natl. Acad. Sci. U.S.A. 101, 16495–16500 (2004). doi: 10.1073/pnas.0402766101; pmid: 15545610
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 16495-16500
-
-
Bystricky, K.1
Heun, P.2
Gehlen, L.3
Langowski, J.4
Gasser, S.M.5
-
85
-
-
84857430552
-
Chromatin replication and epigenome maintenance
-
pmid: 22358331
-
C. Alabert, A. Groth, Chromatin replication and epigenome maintenance. Nat. Rev. Mol. Cell Biol. 13, 153–167 (2012). doi: 10.1038/nrm3288; pmid: 22358331
-
(2012)
Nat. Rev. Mol. Cell Biol.
, vol.13
, pp. 153-167
-
-
Alabert, C.1
Groth, A.2
-
86
-
-
0028783965
-
Displacement of sequence-specific transcription factors from mitotic chromatin
-
pmid: 7553870
-
M. A. Martínez-Balbás, A. Dey, S. K. Rabindran, K. Ozato, C. Wu, Displacement of sequence-specific transcription factors from mitotic chromatin. Cell 83, 29–38 (1995). doi: 10.1016/ 0092-8674(95)90231-7; pmid: 7553870
-
(1995)
Cell
, vol.83
, pp. 29-38
-
-
Martínez-Balbás, M.A.1
Dey, A.2
Rabindran, S.K.3
Ozato, K.4
Wu, C.5
-
87
-
-
45149084413
-
Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions
-
pmid: 18463634
-
L. Guelen et al., Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions. Nature 453, 948–951 (2008). doi: 10.1038/nature06947; pmid: 18463634
-
(2008)
Nature
, vol.453
, pp. 948-951
-
-
Guelen, L.1
-
88
-
-
84864652613
-
The conundrum of gel formation by molecular nanofibers, wormlike micelles, and filamentous proteins: Gelation without cross-links?
-
S. R. Raghavan, J. F. Douglas, The conundrum of gel formation by molecular nanofibers, wormlike micelles, and filamentous proteins: Gelation without cross-links? Soft Matter 8, 8539–8546 (2012). doi: 10.1039/c2sm25107h
-
(2012)
Soft Matter
, vol.8
, pp. 8539-8546
-
-
Raghavan, S.R.1
Douglas, J.F.2
|