-
1
-
-
84877136407
-
Regulation of intestinal homeostasis and immunity with probiotic lactobacilli
-
Van, B.P., Wells, J.M., Kleerebezem, M., Regulation of intestinal homeostasis and immunity with probiotic lactobacilli. Trends Immunol. 34 (2013), 208–215.
-
(2013)
Trends Immunol.
, vol.34
, pp. 208-215
-
-
Van, B.P.1
Wells, J.M.2
Kleerebezem, M.3
-
2
-
-
0035916981
-
Selection and characterization of mixed starter cultures for lactic acid fermentation of carrot, cabbage, beet and onion vegetable mixtures
-
Gardner, N.J., Savard, T., Obermeier, P., Caldwell, G., Champagne, C.P., Selection and characterization of mixed starter cultures for lactic acid fermentation of carrot, cabbage, beet and onion vegetable mixtures. Int. J. Food Microbiol. 64 (2001), 261–275.
-
(2001)
Int. J. Food Microbiol.
, vol.64
, pp. 261-275
-
-
Gardner, N.J.1
Savard, T.2
Obermeier, P.3
Caldwell, G.4
Champagne, C.P.5
-
3
-
-
35748953471
-
The microbial ecology of a typical Italian salami during its natural fermentation
-
Aquilanti, L., Santarelli, S., Silvestri, G., Osimani, A., Petruzzelli, A., Clementi, F., The microbial ecology of a typical Italian salami during its natural fermentation. Int. J. Food Microbiol. 120 (2007), 136–145.
-
(2007)
Int. J. Food Microbiol.
, vol.120
, pp. 136-145
-
-
Aquilanti, L.1
Santarelli, S.2
Silvestri, G.3
Osimani, A.4
Petruzzelli, A.5
Clementi, F.6
-
4
-
-
0025900434
-
The occurrence and growth of microorganisms during the fermentation of fish sausage
-
Aryanta, R.W., Fleet, G.H., Buckle, K.A., The occurrence and growth of microorganisms during the fermentation of fish sausage. Int. J. Food Microbiol. 13 (1991), 143–155.
-
(1991)
Int. J. Food Microbiol.
, vol.13
, pp. 143-155
-
-
Aryanta, R.W.1
Fleet, G.H.2
Buckle, K.A.3
-
5
-
-
68749108245
-
Genetic diversity of the pln locus among oenological Lactobacillus plantarum strains
-
Sáenz, Y., Rojo-Bezares, B., Navarro, L., Díez, L., Somalo, S., Zarazaga, M., Ruiz-Larrea, F., Torres, C., Genetic diversity of the pln locus among oenological Lactobacillus plantarum strains. Int. J. Food Microbiol. 134 (2009), 176–183.
-
(2009)
Int. J. Food Microbiol.
, vol.134
, pp. 176-183
-
-
Sáenz, Y.1
Rojo-Bezares, B.2
Navarro, L.3
Díez, L.4
Somalo, S.5
Zarazaga, M.6
Ruiz-Larrea, F.7
Torres, C.8
-
6
-
-
8344268491
-
Numbers and strains of lactobacilli in some probiotic products
-
Coeuret, V., Gueguen, M., Vernoux, J.P., Numbers and strains of lactobacilli in some probiotic products. Int. J. Food Microbiol. 97 (2004), 147–156.
-
(2004)
Int. J. Food Microbiol.
, vol.97
, pp. 147-156
-
-
Coeuret, V.1
Gueguen, M.2
Vernoux, J.P.3
-
7
-
-
85032705155
-
Lactobacillus plantarum adhesion and colonization: identification of adhesins and effects of intestinal environment on biofilm development
-
Vastano, V., Capri, U., Mauscariello, L., Marasco, R., Sacco, M., Lactobacillus plantarum adhesion and colonization: identification of adhesins and effects of intestinal environment on biofilm development. J. Biotechnol. 150 (2010), 518–519.
-
(2010)
J. Biotechnol.
, vol.150
, pp. 518-519
-
-
Vastano, V.1
Capri, U.2
Mauscariello, L.3
Marasco, R.4
Sacco, M.5
-
8
-
-
80052255726
-
Genomic diversity and versatility of Lactobacillus plantarum, a natural metabolic engineer
-
Siezen, R.J., Je, V.H.V., Genomic diversity and versatility of Lactobacillus plantarum, a natural metabolic engineer. Microb. Cell Factories 10 (2011), 1–13.
-
(2011)
Microb. Cell Factories
, vol.10
, pp. 1-13
-
-
Siezen, R.J.1
Je, V.H.V.2
-
9
-
-
84988966742
-
Complete genome sequence of Lactobacillus plantarum LZ206, a potential probiotic strain with antimicrobial activity against food-borne pathogenic microorganisms
-
Li, P., Gu, Q., Zhou, Q., Complete genome sequence of Lactobacillus plantarum LZ206, a potential probiotic strain with antimicrobial activity against food-borne pathogenic microorganisms. J. Biotechnol. 238 (2016), 52–55.
-
(2016)
J. Biotechnol.
, vol.238
, pp. 52-55
-
-
Li, P.1
Gu, Q.2
Zhou, Q.3
-
10
-
-
84902481844
-
Purification and characterisation of plantaricin ZJ008, a novel bacteriocin against Staphylococcus spp. from Lactobacillus plantarum ZJ008
-
Zhu, X., Zhao, Y., Sun, Y., Gu, Q., Purification and characterisation of plantaricin ZJ008, a novel bacteriocin against Staphylococcus spp. from Lactobacillus plantarum ZJ008. Food Chem. 165 (2014), 216–223.
-
(2014)
Food Chem.
, vol.165
, pp. 216-223
-
-
Zhu, X.1
Zhao, Y.2
Sun, Y.3
Gu, Q.4
-
11
-
-
84929055241
-
Purification and characterization of PlantaricinZJ5, a new bacteriocin produced by Lactobacillus plantarum ZJ5
-
Song, D.F., Zhu, M.Y., Gu, Q., Purification and characterization of PlantaricinZJ5, a new bacteriocin produced by Lactobacillus plantarum ZJ5. PLoS One, 9, 2014, e105549.
-
(2014)
PLoS One
, vol.9
-
-
Song, D.F.1
Zhu, M.Y.2
Gu, Q.3
-
12
-
-
78649514098
-
Diversity of stress tolerance in Lactobacillus plantarum, Lactobacillus pentosus and Lactobacillus paraplantarum: a multivariate screening study
-
Parente, E., Ciocia, F., Ricciardi, A., Zotta, T., Felis, G.E., Torriani, S., Diversity of stress tolerance in Lactobacillus plantarum, Lactobacillus pentosus and Lactobacillus paraplantarum: a multivariate screening study. Int. J. Food Microbiol. 144 (2010), 270–279.
-
(2010)
Int. J. Food Microbiol.
, vol.144
, pp. 270-279
-
-
Parente, E.1
Ciocia, F.2
Ricciardi, A.3
Zotta, T.4
Felis, G.E.5
Torriani, S.6
-
13
-
-
67649656116
-
Plantaricin MG active against Gram-negative bacteria produced by Lactobacillus plantarum KLDS1.0391 isolated from “Jiaoke”, a traditional fermented cream from China
-
Gong, H.S., Meng, X.C., Wang, H., Plantaricin MG active against Gram-negative bacteria produced by Lactobacillus plantarum KLDS1.0391 isolated from “Jiaoke”, a traditional fermented cream from China. Food Control 21 (2010), 89–96.
-
(2010)
Food Control
, vol.21
, pp. 89-96
-
-
Gong, H.S.1
Meng, X.C.2
Wang, H.3
-
14
-
-
84962905881
-
Flexible genomic islands as drivers of genome evolution
-
Rodriguez-Valera, F., Martin-Cuadrado, A.B., López-Pérez, M., Flexible genomic islands as drivers of genome evolution. Curr. Opin. Microbiol. 31 (2016), 151–160.
-
(2016)
Curr. Opin. Microbiol.
, vol.31
, pp. 151-160
-
-
Rodriguez-Valera, F.1
Martin-Cuadrado, A.B.2
López-Pérez, M.3
-
16
-
-
0034893775
-
Evidence for dual functionality of the operon plnABCD in the regulation of bacteriocin production in Lactobacillus plantarum
-
Diep, D.B., Johnsborg, O., Risøen, P.A., Nes, I.F., Evidence for dual functionality of the operon plnABCD in the regulation of bacteriocin production in Lactobacillus plantarum. Mol. Microbiol. 41 (2001), 633–644.
-
(2001)
Mol. Microbiol.
, vol.41
, pp. 633-644
-
-
Diep, D.B.1
Johnsborg, O.2
Risøen, P.A.3
Nes, I.F.4
-
17
-
-
22544456235
-
An agr-like two-component regulatory system in Lactobacillus plantarum is involved in production of a novel cyclic peptide and regulation of adherence
-
Sturme, M.H., Nakayama, J., Molenaar, D., Murakami, Y., Kunugi, R., Fujii, T., Vaughan, E.E., Kleerebezem, M., de Vos, W.M., An agr-like two-component regulatory system in Lactobacillus plantarum is involved in production of a novel cyclic peptide and regulation of adherence. J. Biotechnol. 187 (2005), 5224–5235.
-
(2005)
J. Biotechnol.
, vol.187
, pp. 5224-5235
-
-
Sturme, M.H.1
Nakayama, J.2
Molenaar, D.3
Murakami, Y.4
Kunugi, R.5
Fujii, T.6
Vaughan, E.E.7
Kleerebezem, M.8
de Vos, W.M.9
-
18
-
-
0031764022
-
Two-component signal-transducing systems involved in stress responses and vancomycin susceptibility in Lactobacillus sakei
-
Morel-Deville, F., Fauvel, F., Morel, P., Two-component signal-transducing systems involved in stress responses and vancomycin susceptibility in Lactobacillus sakei. Microbiology 144 (1998), 2873–2883.
-
(1998)
Microbiology
, vol.144
, pp. 2873-2883
-
-
Morel-Deville, F.1
Fauvel, F.2
Morel, P.3
-
19
-
-
34547842488
-
Quorum-sensing based bacteriocin production is down-regulated by N-terminally truncated species of gene activators
-
Straume, D., Kjos, M., Nes, I.F., Diep, D.B., Quorum-sensing based bacteriocin production is down-regulated by N-terminally truncated species of gene activators. Mol. Gen. Genomics. 278 (2007), 283–293.
-
(2007)
Mol. Gen. Genomics.
, vol.278
, pp. 283-293
-
-
Straume, D.1
Kjos, M.2
Nes, I.F.3
Diep, D.B.4
-
20
-
-
84887816114
-
The role of plNC8HK-plnD genes in bacteriocin production in Lactobacillus plantarum KLDS1.0391
-
Man, L.L., Meng, X.C., Zhao, R.H., Xiang, D.J., The role of plNC8HK-plnD genes in bacteriocin production in Lactobacillus plantarum KLDS1.0391. Int. Dairy J. 34 (2014), 267–274.
-
(2014)
Int. Dairy J.
, vol.34
, pp. 267-274
-
-
Man, L.L.1
Meng, X.C.2
Zhao, R.H.3
Xiang, D.J.4
-
22
-
-
84872488958
-
Bacteriocins - a viable alternative to antibiotics?
-
Cotter, P.D., Ross, R.P., Hill, C., Bacteriocins - a viable alternative to antibiotics?. Nat. Rev. Microbiol. 11 (2013), 95–105.
-
(2013)
Nat. Rev. Microbiol.
, vol.11
, pp. 95-105
-
-
Cotter, P.D.1
Ross, R.P.2
Hill, C.3
-
23
-
-
84948097260
-
Complete genome sequences and comparative genome analysis of Lactobacillus plantarum strain 5-2 isolated from fermented soybean
-
Liu, C.J., Wang, R., Gong, F.M., Liu, X.F., Zheng, H.J., Luo, Y.Y., Li, X., Complete genome sequences and comparative genome analysis of Lactobacillus plantarum strain 5-2 isolated from fermented soybean. Genomics 106 (2015), 404–411.
-
(2015)
Genomics
, vol.106
, pp. 404-411
-
-
Liu, C.J.1
Wang, R.2
Gong, F.M.3
Liu, X.F.4
Zheng, H.J.5
Luo, Y.Y.6
Li, X.7
-
24
-
-
0037452621
-
Complete genome sequence of Lactobacillus plantarum WCFS1
-
Kleerebezem, M., Boekhorst, J., van Kranenburg, R., Molenaar, D., Kuipers, O.P., Leer, R., Tarchini, R., Peters, S.A., Sandbrink, H.M., Fiers, M.W., Stiekema, W., Lankhorst, R.M., Bron, P.A., Hoffer, S.M., Groot, M.N., Kerkhoven, R., de Vries, M., Ursing, B., de Vos, W.M., Siezen, R.J., Complete genome sequence of Lactobacillus plantarum WCFS1. Proc. Natl. Acad. Sci. U. S. A. 100 (2003), 1990–1995.
-
(2003)
Proc. Natl. Acad. Sci. U. S. A.
, vol.100
, pp. 1990-1995
-
-
Kleerebezem, M.1
Boekhorst, J.2
van Kranenburg, R.3
Molenaar, D.4
Kuipers, O.P.5
Leer, R.6
Tarchini, R.7
Peters, S.A.8
Sandbrink, H.M.9
Fiers, M.W.10
Stiekema, W.11
Lankhorst, R.M.12
Bron, P.A.13
Hoffer, S.M.14
Groot, M.N.15
Kerkhoven, R.16
de Vries, M.17
Ursing, B.18
de Vos, W.M.19
Siezen, R.J.20
more..
-
25
-
-
33751565299
-
GroES/GroEL and DnaK/DnaJ have distinct roles in stress responses and during cell cycle progression in Caulobacter crescentus
-
Susin, M.F., Baldini, R.L., Gueiros-Filho, F., Gomes, S.L., GroES/GroEL and DnaK/DnaJ have distinct roles in stress responses and during cell cycle progression in Caulobacter crescentus. J. Bacteriol. 188 (2006), 8044–8053.
-
(2006)
J. Bacteriol.
, vol.188
, pp. 8044-8053
-
-
Susin, M.F.1
Baldini, R.L.2
Gueiros-Filho, F.3
Gomes, S.L.4
-
26
-
-
0033816767
-
Changes in cspL, cspP, and cspC mRNA abundance as a function of cold shock and growth phase in Lactobacillus plantarum
-
Derzelle, S., Hallet, B., Francis, K.P., Ferain, T., Delcour, J., Hols, P., Changes in cspL, cspP, and cspC mRNA abundance as a function of cold shock and growth phase in Lactobacillus plantarum. J. Bacteriol. 182 (2000), 5105–5113.
-
(2000)
J. Bacteriol.
, vol.182
, pp. 5105-5113
-
-
Derzelle, S.1
Hallet, B.2
Francis, K.P.3
Ferain, T.4
Delcour, J.5
Hols, P.6
-
27
-
-
0031890211
-
The epithelial sodium-hydrogen antiporter Na +/H + exchanger 3 accumulates and is functional in recycling endosomes
-
D'Souza, S., Garcia-Cabado, A., Yu, F., Teter, K., Lukacs, G., Skorecki, K., Moore, H., Orlowski, J., Grinstein, S., The epithelial sodium-hydrogen antiporter Na +/H + exchanger 3 accumulates and is functional in recycling endosomes. J. Biol. Chem. 273 (1998), 2035–2043.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 2035-2043
-
-
D'Souza, S.1
Garcia-Cabado, A.2
Yu, F.3
Teter, K.4
Lukacs, G.5
Skorecki, K.6
Moore, H.7
Orlowski, J.8
Grinstein, S.9
-
28
-
-
27944483300
-
Alkaline pH homeostasis in bacteria: new insights
-
Padan, E., Bibi, E., Ito, M., Krulwich, T.A., Alkaline pH homeostasis in bacteria: new insights. Biochim Biophys Acta Biomembr. 1717 (2005), 67–88.
-
(2005)
Biochim Biophys Acta Biomembr.
, vol.1717
, pp. 67-88
-
-
Padan, E.1
Bibi, E.2
Ito, M.3
Krulwich, T.A.4
-
29
-
-
75749140534
-
The extracellular biology of the lactobacilli
-
Kleerebezem, M., Hols, P., Bernard, E., Rolain, T., Zhou, M., Siezen, R.J., Bron, P.A., The extracellular biology of the lactobacilli. FEMS Microbiol. Rev. 34 (2010), 199–230.
-
(2010)
FEMS Microbiol. Rev.
, vol.34
, pp. 199-230
-
-
Kleerebezem, M.1
Hols, P.2
Bernard, E.3
Rolain, T.4
Zhou, M.5
Siezen, R.J.6
Bron, P.A.7
-
30
-
-
0035403493
-
Detection of differential gene expression in biofilm-forming versus planktonic populations of Staphylococcus aureus using micro-representational difference analysis
-
Becker, P., Hufnagle, W., Peters, G., Herrman, M., Detection of differential gene expression in biofilm-forming versus planktonic populations of Staphylococcus aureus using micro-representational difference analysis. Appl. Environ. Microbiol. 67 (2001), 2958–2965.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 2958-2965
-
-
Becker, P.1
Hufnagle, W.2
Peters, G.3
Herrman, M.4
-
31
-
-
49549110708
-
Surface-bound proteins of Lactobacillus plantarum 423 that contribute to adhesion of Caco-2 cells and their role in competitive exclusion and displacement of Clostridium sporogenes and Enterococcus faecalis
-
Ramiah, K., van Reenen, C.A., Dicks, L.M., Surface-bound proteins of Lactobacillus plantarum 423 that contribute to adhesion of Caco-2 cells and their role in competitive exclusion and displacement of Clostridium sporogenes and Enterococcus faecalis. Res. Microbiol. 159 (2008), 470–475.
-
(2008)
Res. Microbiol.
, vol.159
, pp. 470-475
-
-
Ramiah, K.1
van Reenen, C.A.2
Dicks, L.M.3
-
32
-
-
34147189702
-
Indigenous dadih lactic acid bacteria: cell surface properties and interactions with pathogens
-
Collado, C., Surono, I., Meriluoto, J., Salminen, S., Indigenous dadih lactic acid bacteria: cell surface properties and interactions with pathogens. J. Food Sci. 72 (2007), 89–93.
-
(2007)
J. Food Sci.
, vol.72
, pp. 89-93
-
-
Collado, C.1
Surono, I.2
Meriluoto, J.3
Salminen, S.4
-
33
-
-
84934434569
-
Evolutionary analysis of the global landscape of protein domain types and domain architectures associated with family 14 carbohydrate-binding modules
-
Chang, T.C., Stergiopoulos, I., Evolutionary analysis of the global landscape of protein domain types and domain architectures associated with family 14 carbohydrate-binding modules. FEBS Lett. 589 (2015), 1813–1818.
-
(2015)
FEBS Lett.
, vol.589
, pp. 1813-1818
-
-
Chang, T.C.1
Stergiopoulos, I.2
-
34
-
-
0035919670
-
Complete genome sequence of a virulent isolate of Streptococcus pneumoniae
-
Tettelin, H., Nelson, K.E., Paulsen, I.T., Eisen, J.A., Read, T.D., Peterson, S., Heidelberg, J., DeBoy, R.T., Haft, D.H., Dodson, R.J., Durkin, A.S., Gwinn, M., Kolonay, I.F., Nelson, W.C., Peterson, J.D., Umayam, L.A., White, O., Salzberg, S.L., Lewis, M.R., Radune, D., Holtzapple, E., Khouri, H., Wolf, A.M., Utterback, T.R., Hansen, C.L., McDonald, L.A., Feldblyum, T.V., Angiuoli, S., Dickinson, T., Hickey, E.K., Holt, I.E., Loftus, B.J., Yang, F., Smith, H.O., Venter, J.C., Dougherty, B.A., Morrison, D.A., Hollingshead, S.K., Fraser, C.M., Complete genome sequence of a virulent isolate of Streptococcus pneumoniae. Science 293 (2001), 498–506.
-
(2001)
Science
, vol.293
, pp. 498-506
-
-
Tettelin, H.1
Nelson, K.E.2
Paulsen, I.T.3
Eisen, J.A.4
Read, T.D.5
Peterson, S.6
Heidelberg, J.7
DeBoy, R.T.8
Haft, D.H.9
Dodson, R.J.10
Durkin, A.S.11
Gwinn, M.12
Kolonay, I.F.13
Nelson, W.C.14
Peterson, J.D.15
Umayam, L.A.16
White, O.17
Salzberg, S.L.18
Lewis, M.R.19
Radune, D.20
Holtzapple, E.21
Khouri, H.22
Wolf, A.M.23
Utterback, T.R.24
Hansen, C.L.25
McDonald, L.A.26
Feldblyum, T.V.27
Angiuoli, S.28
Dickinson, T.29
Hickey, E.K.30
Holt, I.E.31
Loftus, B.J.32
Yang, F.33
Smith, H.O.34
Venter, J.C.35
Dougherty, B.A.36
Morrison, D.A.37
Hollingshead, S.K.38
Fraser, C.M.39
more..
-
35
-
-
84908372856
-
The effect of moonlighting proteins on the adhesion and aggregation ability of Lactobacillus helveticus
-
TWaśko, A., Polak-Berecka, M., Paduch, R., Jóźwiak, K., The effect of moonlighting proteins on the adhesion and aggregation ability of Lactobacillus helveticus. Anaerobe 30 (2014), 161–168.
-
(2014)
Anaerobe
, vol.30
, pp. 161-168
-
-
TWaśko, A.1
Polak-Berecka, M.2
Paduch, R.3
Jóźwiak, K.4
-
36
-
-
29644437923
-
GroEL of Lactobacillus johnsonii La1 (NCC 533) is cell surface associated: potential role in interactions with the host and the gastric pathogen Helicobacter pylori
-
Bergonzelli, G.E., Granato, D., Pridmore, R.D., Marvin-Guy, L.F., Donnicola, D., Corthésy-Theulaz, I.E., GroEL of Lactobacillus johnsonii La1 (NCC 533) is cell surface associated: potential role in interactions with the host and the gastric pathogen Helicobacter pylori. Infect. Immun. 74 (2006), 425–434.
-
(2006)
Infect. Immun.
, vol.74
, pp. 425-434
-
-
Bergonzelli, G.E.1
Granato, D.2
Pridmore, R.D.3
Marvin-Guy, L.F.4
Donnicola, D.5
Corthésy-Theulaz, I.E.6
-
37
-
-
77953221206
-
DnaK from Bifidobacterium animalis subsp. lactis is a surface-exposed human plasminogen receptor upregulated in response to bile salts
-
Candela, M., Centanni, M., Fiori, J., Biagi, E., Turroni, S., Orrico, C., Bergmann, S., Hammerschmidt, S., Brigidi, P., DnaK from Bifidobacterium animalis subsp. lactis is a surface-exposed human plasminogen receptor upregulated in response to bile salts. Microbiology 156 (2010), 1609–1618.
-
(2010)
Microbiology
, vol.156
, pp. 1609-1618
-
-
Candela, M.1
Centanni, M.2
Fiori, J.3
Biagi, E.4
Turroni, S.5
Orrico, C.6
Bergmann, S.7
Hammerschmidt, S.8
Brigidi, P.9
-
38
-
-
84861361412
-
Glutamine synthetase and glucose-6-phosphate isomerase are adhesive moonlighting proteins of Lactobacillus crispatus released by epithelial cathelicidin LL-37
-
Kainulainen, V., Loimaranta, V., Pekkala, A., Edelman, S., Antikainen, J., Kylväjä, R., Laaksonen, M., Laakkonen, L., Finne, J., Korhonen, T.K., Glutamine synthetase and glucose-6-phosphate isomerase are adhesive moonlighting proteins of Lactobacillus crispatus released by epithelial cathelicidin LL-37. J. Bacteriol. 194 (2012), 2509–2519.
-
(2012)
J. Bacteriol.
, vol.194
, pp. 2509-2519
-
-
Kainulainen, V.1
Loimaranta, V.2
Pekkala, A.3
Edelman, S.4
Antikainen, J.5
Kylväjä, R.6
Laaksonen, M.7
Laakkonen, L.8
Finne, J.9
Korhonen, T.K.10
-
39
-
-
84874529832
-
454 pyrosequencing analysis on faecal samples from a randomized DBPC trial of colicky infants treated with Lactobacillus reuteri DSM 17938
-
Roos, S., Dicksved, J., Tarasco, V., Locatelli, E., Ricceri, F., Grandin, U., Savino, F., 454 pyrosequencing analysis on faecal samples from a randomized DBPC trial of colicky infants treated with Lactobacillus reuteri DSM 17938. PLoS One, 8, 2013, e56710.
-
(2013)
PLoS One
, vol.8
-
-
Roos, S.1
Dicksved, J.2
Tarasco, V.3
Locatelli, E.4
Ricceri, F.5
Grandin, U.6
Savino, F.7
-
40
-
-
78649358717
-
Quake: quality-aware detection and correction of sequencing errors
-
Kelley, D.R., Schatz, M.C., Salzberg, S.L., Quake: quality-aware detection and correction of sequencing errors. Genome Biol., 11, 2010, R116.
-
(2010)
Genome Biol.
, vol.11
, pp. R116
-
-
Kelley, D.R.1
Schatz, M.C.2
Salzberg, S.L.3
-
41
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S.F., Gish, W., Miller, W., Myers, E.W., Lipman, D.J., Basic local alignment search tool. J. Mol. Biol. 215 (1990), 403–410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
42
-
-
43349091544
-
Using MUMmer to identify similar regions in large sequence sets
-
(Chapter 10:Unit 10.3)
-
Delcher, A.L., Salzberg, S.L., Phillippy, A.M., Using MUMmer to identify similar regions in large sequence sets. Curr. Protoc. Bioinformatics, 2003 (Chapter 10:Unit 10.3).
-
(2003)
Curr. Protoc. Bioinformatics
-
-
Delcher, A.L.1
Salzberg, S.L.2
Phillippy, A.M.3
-
43
-
-
0033485517
-
Improved microbial gene identification with GLIMMER
-
Delcher, A.L., Harmon, D., Kasif, S., White, O., Salzberg, S.L., Improved microbial gene identification with GLIMMER. Nucleic Acids Res. 27 (1999), 4636–4641.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 4636-4641
-
-
Delcher, A.L.1
Harmon, D.2
Kasif, S.3
White, O.4
Salzberg, S.L.5
-
44
-
-
0030854739
-
tRNAscan-SE:a program for improved detection of transfer RNA genes in genomic sequence
-
Lowe, T.M., S.R., tRNAscan-SE:a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25 (1997), 955–964.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
S.R.2
-
45
-
-
34250665888
-
RNAmmer: consistent and rapid annotation of ribosomal RNA genes
-
Lagesen, K., Hallinm, P., Rodland, E.A., Staerfeldt, H.H., Rognes, T., Ussery, D.W., RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 35 (2007), 3100–3108.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 3100-3108
-
-
Lagesen, K.1
Hallinm, P.2
Rodland, E.A.3
Staerfeldt, H.H.4
Rognes, T.5
Ussery, D.W.6
-
46
-
-
84874266637
-
Rfam 11.0: 10 years of RNA families
-
Burge, S.W., Daub, J., Eberhardt, R., Tate, J., Barquist, L., Nawrocki, E.P., Eddy, S.R., Gardner, P.P., Bateman, A., Rfam 11.0: 10 years of RNA families. Nucleic Acids Res. 41 (2013), D226–D232.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D226-D232
-
-
Burge, S.W.1
Daub, J.2
Eberhardt, R.3
Tate, J.4
Barquist, L.5
Nawrocki, E.P.6
Eddy, S.R.7
Gardner, P.P.8
Bateman, A.9
-
47
-
-
79959979274
-
PHAST: a fast phage search tool
-
Zhou, Y., Liang, Y., Lynch, K.H., Dennis, J.J., Wishart, D.S., PHAST: a fast phage search tool. Nucleic Acids Res. 39 (2009), W347–W352.
-
(2009)
Nucleic Acids Res.
, vol.39
, pp. W347-W352
-
-
Zhou, Y.1
Liang, Y.2
Lynch, K.H.3
Dennis, J.J.4
Wishart, D.S.5
-
48
-
-
61449201423
-
IslandViewer: an integrated interface for computational identification and visualization of genomic islands
-
Langille, M.G., Brinkman, F.S., IslandViewer: an integrated interface for computational identification and visualization of genomic islands. Bioinformatics 25 (2009), 664–665.
-
(2009)
Bioinformatics
, vol.25
, pp. 664-665
-
-
Langille, M.G.1
Brinkman, F.S.2
-
49
-
-
70349541000
-
Biological insights from structures of two-component proteins
-
Gao, R., Stock, A.M., Biological insights from structures of two-component proteins. Annu. Rev. Microbiol. 63 (2009), 133–154.
-
(2009)
Annu. Rev. Microbiol.
, vol.63
, pp. 133-154
-
-
Gao, R.1
Stock, A.M.2
-
50
-
-
84891757311
-
eggNOG v4.0: nested orthology inference across 3686 organisms
-
Powell, S., Forslund, K., Szklarczyk, D., Trachana, K., Roth, A., Huerta-Cepas, J., Gabaldon, T., Rattei, T., Creevey, C., Kuhn, M., Jensen, L.J., von Mering, C., Bork, P., eggNOG v4.0: nested orthology inference across 3686 organisms. Nucleic Acids Res. 42 (2014), D231–D239.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D231-D239
-
-
Powell, S.1
Forslund, K.2
Szklarczyk, D.3
Trachana, K.4
Roth, A.5
Huerta-Cepas, J.6
Gabaldon, T.7
Rattei, T.8
Creevey, C.9
Kuhn, M.10
Jensen, L.J.11
von Mering, C.12
Bork, P.13
-
51
-
-
84875073951
-
Inmembrane, a bioinformatic workflow for annotation of bacterial cell-surface proteomes
-
Perry, A.J., Ho, B.K., Inmembrane, a bioinformatic workflow for annotation of bacterial cell-surface proteomes. Source Code Biol. Med., 8, 2013, 9.
-
(2013)
Source Code Biol. Med.
, vol.8
, pp. 9
-
-
Perry, A.J.1
Ho, B.K.2
-
52
-
-
84891763855
-
The carbohydrate-active enzymes database (CAZy) in 2013
-
Lombard, V., Golaconda Ramulu, H., Drula, E., Coutinho, P.M., Henrissat, B., The carbohydrate-active enzymes database (CAZy) in 2013. Nucleic Acids Res. 42 (2014), D490–D495.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D490-D495
-
-
Lombard, V.1
Golaconda Ramulu, H.2
Drula, E.3
Coutinho, P.M.4
Henrissat, B.5
-
53
-
-
43949138227
-
Blast2GO: a comprehensive suite for functional analysis in plant genomics
-
Conesa, A., Götz, S., Blast2GO: a comprehensive suite for functional analysis in plant genomics. Int. J. Plant Genomics, 2008, 619832.
-
(2008)
Int. J. Plant Genomics
, pp. 619832
-
-
Conesa, A.1
Götz, S.2
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