Methodological evaluation of DNA-based molecular keys to identify categories of mislabelling in commercial products from genus Merluccius spp.

Food Chemistry

Volumn 239, Issue , 2018, Pages 640-648

  Pérez, Montse ^a   Santafé Muñoz, Angie M ^b   Balado, Miguel ^b,c   Presa, Pablo ^b  

^a Instituto Español de Oceanografía Subida a Radio Faro   (Spain)

^b UNIVERSITY OF VIGO   (Spain)

^c Santiago de Compostela Spain   (Spain)

Author keywords

Commercial mislabelling; Commercial traceability; Cytochrome b RFLP; Hake ITS1 RFLP; Hakes; Merluccius spp.; Phylodiagnosis; Species authentication

Indexed keywords

DNA;

COMMERCIAL MISLABELLING; COMMERCIAL TRACEABILITY; CYTOCHROME B; HAKE ITS1-RFLP; HAKES; MERLUCCIUS SPP; PHYLODIAGNOSIS;

DIAGNOSTIC PRODUCTS;

CYTOCHROME B; MITOCHONDRIAL DNA; DNA;

ARTICLE; COMPARATIVE STUDY; CONTROLLED STUDY; COOKED FOOD; DNA DETERMINATION; DNA EXTRACTION; FISH; FISH GENETICS; FISH PRODUCT; GENE AMPLIFICATION; MARKETING; MERLUCCIUS; MERLUCCIUS AUSTRALIS; MERLUCCIUS CAPENSIS; MERLUCCIUS HUBBSI; MERLUCCIUS MERLUCCIUS; MERLUCCIUS PARADOXUS; NONHUMAN; PHYLOGENETIC TREE; POLYMERASE CHAIN REACTION; QUANTITATIVE ANALYSIS; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SPECIES COMPOSITION; ANIMAL; GADIFORMES;

ANIMALS; CYTOCHROMES B; DNA; GADIFORMES; POLYMERASE CHAIN REACTION; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH;

EID: 85021775800     PISSN: 03088146     EISSN: 18737072     Source Type: Journal    
DOI: 10.1016/j.foodchem.2017.06.138     Document Type: Article

References (40)

1. Armani, A., Castigliego, L., Tinacci, L., Gianfaldoni, D., Guidi, A., Multiplex conventional and real-time PCR for fish species identification of Bianchetto (juvenile form of Sardina pilchardus), Rossetto (Aphia minuta), and Icefish in fresh, marinated and cooked products. Food Chemistry 133:1 (2012), 184–192.
2. Armani, A., Guardone, L., Castigliego, L., D'Amico, P., Messina, A., Malandra, R., Guidia, A., DNA and Mini-DNA barcoding for the identification of Porgies species (family Sparidae) of commercial interest on the international market. Food Control 50 (2015), 589–596, 10.1016/j.foodcont.2014.09.025.
3. Baker, C.S., Palumbi, S.R., Which whales are hunted? A molecular genetic approach to monitoring whaling. Science 265 (1994), 1538–1539.
4. Baker, C.S., Palumbi, S.R., Population structure, molecular systematics, and forensic identification of whales and dolphins. Avise, J.C., Hamrick, J.L., (eds.) Conservation genetics, 1996, Chapman & Hall, New York, 10–49.
5. Bartlett, S.E., Davidson, W.S., Identification of Thunnus tuna species by the polymerase chain reaction and direct sequence analysis of their mitochondrial Cytochrome b genes. Canadian Journal of Fisheries and Aquatic Sciences 48 (1991), 309–317.
6. Bartlett, S.E., Davidson, W.S., FINS (forensically informative nucleotide sequencing): A procedure for identifying the animal origin of biological specimens. BioTechniques 12 (1992), 408–411.
7. Birky, C.W., Maruyama, T., Fuerst, P., An approach to population and evolutionary genetic theory for genes in mitochondria and chloroplasts, and some results. Genetics 103 (1983), 513–527.
8. Cawthorn, D.M., Steinman, H.A., Witthuhn, R.C., DNA barcoding reveals a high incidence of fish species misrepresentation and substitution on the South African market. Food Research International 46 (2012), 30–40.
9. Céspedes, A., García, T., Carrera, E., González, I., Fernández, A., Hernández, P.E., Martín, R., Identification of sole (Solea solea) and Greenland halibut (Reinhardtius hippoglossoides) by PCR amplification of the 5S rDNA gene. Journal of Agricultural and Food Chemistry 47 (1999), 1046–1050.
10. Chandrika, M., Maimunah, M., Zainon, M.N., Son, R., Identification of the species origin of commercially available processed food products by mitochondrial DNA analysis. International Food Research Journal 17 (2010), 867–876.
11. Di Pinto, A., Marchetti, P., Mottola, A., Bozzo, G., Bonerba, E., Ceci, E., Tantillo, G., Species identification in fish fillet products using DNA barcoding. Fisheries Research 170 (2015), 9–13, 10.1016/j.fishres.2015.05.006.
12. Etienne, M., Jérôme, M., Fleurence, J., Rehbein, H., Kündiger, R., Mendes, R., Luten, J., Identification of fish species after cooking by SDS-PAGE and urea IEF: A collaborative study. Journal of Agricultural and Food Chemistry 48 (2000), 2653–2658.
13. Felsenstein, J., Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39:4 (1985), 783–791, 10.2307/2408678.
14. Felsenstein, J., Phylogenies from restriction sites: A maximum-likelihood approach. Evolution 46 (1992), 159–173.
15. Felsenstein, J., PHYLIP (Phylogeny Inference Package), version 3.5. 1993, Department of Genetics, University of Washington, Seattle.
16. Forrest, A., Carnegie, P.R., Identification of gourmet meat using FINS (Forensically Informative Nucleotide Sequencing). BioTechniques 17 (1994), 24–25.
17. Fraga-Nodarse, J., Rodríguez, J., Fuentes, O., Castex, M., Fernández-Calienes, A., Comparación entre 5 métodos para la extracción de ADN de Triatomíneos: su utilización en la técnica de ADN polimórfico amplificado al azar (RAPD). Revista Cubana de Medicina Tropical 56 (2004), 203–207.
18. Galal-Khallaf, A., Ardura, A., Mohammed-Geba, K., Borrell, Y.J., García-Vázquez, E., DNA barcoding reveals a high level of mislabelling in Egyptian fish fillets. Food Control 46 (2014), 441–445.
19. García-Vázquez, E., Perez, J., Martinez, J.L., Pardinas, A.F., Lopez, B., Karaiskou, N., Triantafyllidis, A., High level of mislabelling in Spanish and Greek hake markets suggests the fraudulent introduction of African species. Journal of Agricultural and Food Chemistry 59 (2011), 475–480.
20. Higgins, D., Rohrlach, A.B., Kaidonis, J., Townsend, G., Austin, J.J., Differential nuclear and mitochondrial DNA preservation in post-mortem teeth with implications for forensic and ancient DNA studies. PLoS One, 10(5), 2015, e0126935, 10.1371/journal.pone.012693.
21. Lloris, D., Matallanas, J., Oliver, P., Merluzas del Mundo (Familia Merlucciidae). Catálogo Comentado e Ilustrado de las Merluzas Conocidas. 2003, FAO, Roma, Italy.
22. Machado-Schiaffino, G., Martínez, J.L., García-Vázquez, E., Detection of mislabeling in hake seafood employing mtSNPs-based methodology with identification of eleven hake species of the genus Merluccius. Journal of Agricultural and Food Chemistry 56 (2008), 5091–5095.
23. Mackie, I., Jones, B.W., The use of electrophoresis of the water-soluble (sarcoplasmic) proteins of fish muscle to differentiate the closely related species of hake (Merluccius sp.). Comparative Biochemistry and Physiology Part B: Comparative Biochemistry 59 (1978), 95–98.
24. Maddison, W.P., Molecular approaches and the growth of phylogenetic biology. Ferraris, J.D., Palumbi, S.R., (eds.) Molecular zoology: Advances, strategies, and protocols, 1996, Wiley-Liss, New York, 47–63.
25. Miller, D., Jessel, A., Mariani, S., Seafood mislabeling: Comparisons of two western European case studies assist in defining influencing factors, mechanisms and motives. Fish and Fisheries 13 (2012), 345–358.
26. Pérez, M., Álvarez, C., Balado, M., Cabado, A.G., Vieites, J.M., Presa, P., Identification of South Atlantic hakes (Merluccius australis and Merluccius hubbsi) in processed foods by PCR-RFLPs of Cytochrome b gene. Journal of Aquatic Food Product Technology 13 (2004), 59–67.
27. Pérez, M., Cabado, A.G., Vieites, J.M., Presa, P., Experimental assessment of a new rDNA-based method for the identification of Merluccius capensis and Merluccius paradoxus in commercial products. Journal of Aquatic Food Product Technology 13 (2004), 49–57.
28. Pérez, M., Presa, P., Validation of a tRNA-Glu-Cytochrome b key for the molecular identification of 12 hake Species (Merluccius spp.) and Atlantic Cod (Gadus morhua) Using PCR-RFLPs, FINS, and BLAST. Journal of Agricultural and Food Chemistry 56 (2008), 10865–10871.
29. Pérez, M., Vieites, J.M., Presa, P., ITS1-rDNA-based methodology to identify world-wide hake species of the genus Merluccius. Journal of Agricultural and Food Chemistry 53 (2005), 5239–5247.
30. Pitcher, T., Alheit, J., What makes a hake? A review of the critical biological features that sustain global hake fisheries. Alheit, J., Pitcher, T., (eds.) Hake. Biology, fisheries and markets, 1995, Chapman & Hall, New York, 1–14.
31. Presa, P., Pardo, B., Martínez, P., Bernatchez, L., Phylogeographic congruence between mtDNA and rDNA ITS markers in brown trout. Molecular Biology and Evolution 19 (2002), 2161–2175.
32. Quinteiro, J., Vidal, R., Izquierdo, M., Sotelo, C.G., Chapela, M.J., Pérez-Martín, R.I., Rey-Méndez, M., Identification of hake species (Merluccius genus) using sequencing and PCR-RFLP analysis of mitochondrial DNA control region sequences. Journal of Agricultural and Food Chemistry 49 (2001), 5108–5114.
33. Sánchez, A., Quinteiro, J., Rey-Méndez, M., Pérez-Martin, R.I., Sotelo, C.G., Identification of European Hake species (Merluccius merluccius) using real-time PCR. Journal of Agricultural and Food Chemistry 57 (2009), 3397–3403.
34. Secretaría General de Pesca. (2014). El mercado de la merluza. Informe técnico de la Secretaría General de Pesca, Ministerio de Agricultura, Alimentación y Medio Ambiente ( http://www.magrama.gob.es/es/pesca/temas/mercados-economia-pesquera/10_INFORME_MERLUZA_FEBRERO_2014_tcm7-336344.pdf).
35. Smouse, P.E., Li, W.H., Likelihood analysis of mitochondrial restriction-cleavage patterns for the human-chimpanzee-gorilla trichotomy. Evolution 41 (1987), 1162–1176.
36. Sotelo, C.G., Piñeiro, C., Gallardo, J.M., Pérez-Martín, R.I., Fish species identification in seafood products. Trends in Food Science and Technology 4 (1993), 395–401.
37. Terol, J., Mascarell, R., Fernández-Pedrosa, V., Pérez-Alonso, M., Statistical validation of the identification of tuna species: Bootstrap analysis of mitochondrial DNA sequences. Journal of Agricultural and Food Chemistry 50 (2002), 963–969.
38. Velasco, A., Aldrey, A., Pérez-Martín, R.I., Sotelo, C.G., Assessment of the labeling accuracy of Spanish semipreserved anchovies products by FINS (forensically informative nucleotide sequencing). Heliyon, 2(6), 2016, e00124.
39. von der Heyden, S., Lipinski, M., Matthee, C., Species‐specific genetic markers for identification of early life‐history stages of Cape hakes, Merluccius capensis and Merluccius paradoxus in the southern Benguela Current. Journal of Fish Biology 70 (2007), 262–268.
40. Wolf, C., Burgener, M., Hübner, P., Lüthy, J., PCR-RFLP analysis of mitochondrial DNA: Differentiation of fish species. LWT-Food Science and Technology 33 (2000), 144–150.