메뉴 건너뛰기




Volumn 10, Issue 5, 2015, Pages

Differential nuclear and mitochondrial DNA preservation in post-mortem teeth with implications for forensic and ancient DNA studies

Author keywords

[No Author keywords available]

Indexed keywords

CELL NUCLEUS DNA; DNA FRAGMENT; MITOCHONDRIAL DNA; DNA; MICROSATELLITE DNA;

EID: 84930682529     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0126935     Document Type: Article
Times cited : (65)

References (46)
  • 1
    • 84867331947 scopus 로고    scopus 로고
    • A high coverage genome sequence from an archaic denisovan individual
    • PMID: 22936568
    • Meyer M, Kircher M, Gansauge MT, Li H, Racimo F, Mallick S, et al. (2012) A high coverage genome sequence from an archaic denisovan individual. Science 338: 222-226. doi: 10.1126/science.1224344 PMID: 22936568
    • (2012) Science , vol.338 , pp. 222-226
    • Meyer, M.1    Kircher, M.2    Gansauge, M.T.3    Li, H.4    Racimo, F.5    Mallick, S.6
  • 3
    • 84875759214 scopus 로고    scopus 로고
    • Sequencing ancient calcified dental plaque shows changes in oral microbiota with dietary shifts of the Neolithic and Industrial revolutions
    • PMID: 23416520
    • Adler CJ, Dobney K, Weyrich LS, Kaidonis J, Walker AW, Haak W, et al. (2013) Sequencing ancient calcified dental plaque shows changes in oral microbiota with dietary shifts of the Neolithic and Industrial revolutions. Nature 45: 450-455. doi: 10.1038/ng.2536 PMID: 23416520
    • (2013) Nature , vol.45 , pp. 450-455
    • Adler, C.J.1    Dobney, K.2    Weyrich, L.S.3    Kaidonis, J.4    Walker, A.W.5    Haak, W.6
  • 4
    • 84869503928 scopus 로고    scopus 로고
    • Revision of the SNPforID 34-plex forensic ancestry test: Assay enhancements, standard reference sample genotypes and extended population studies
    • PMID: 22749789
    • Fondevila M, Phillips C, Santos C, Freire Aradas A, Vallone PM, Butler JM, et al. (2013) Revision of the SNPforID 34-plex forensic ancestry test: Assay enhancements, standard reference sample genotypes and extended population studies Forensic Sci Int Genetics 7: 63-74. doi: 10.1016/j.fsigen.2012.06.007 PMID: 22749789
    • (2013) Forensic Sci Int Genetics , vol.7 , pp. 63-74
    • Fondevila, M.1    Phillips, C.2    Santos, C.3    Freire Aradas, A.4    Vallone, P.M.5    Butler, J.M.6
  • 5
    • 84876299764 scopus 로고    scopus 로고
    • Development of a novel forensic STR multiplex for ancestry analysis and extended identity testing
    • PMID: 23400880
    • Phillips C, Fernandez-Formoso L, Gelaber-Besada M, Garcia-Magarinos M, Santos C, Fondevila M, et al. (2013) Development of a novel forensic STR multiplex for ancestry analysis and extended identity testing. Electrophoresis 34: 1151-1162. doi: 10.1002/elps.201200621 PMID: 23400880
    • (2013) Electrophoresis , vol.34 , pp. 1151-1162
    • Phillips, C.1    Fernandez-Formoso, L.2    Gelaber-Besada, M.3    Garcia-Magarinos, M.4    Santos, C.5    Fondevila, M.6
  • 6
    • 79951787403 scopus 로고    scopus 로고
    • Improving human forensics through advances in genetics, genomics and molecular biology
    • Kayser M, de Knijff P (2012) Improving human forensics through advances in genetics, genomics and molecular biology Nature 12: 179-192.
    • (2012) Nature , vol.12 , pp. 179-192
    • Kayser, M.1    De Knijff, P.2
  • 9
    • 70649097177 scopus 로고    scopus 로고
    • A new multiplex for human identification using insertion/deletion polymorphisms
    • PMID: 19862748
    • Pereira R, Phillips C, Alves C, Amorim A, Carracedo A, Gusmao L (2009) A new multiplex for human identification using insertion/deletion polymorphisms Electrophoresis 30: 3682-3690. doi: 10.1002/elps.200900274 PMID: 19862748
    • (2009) Electrophoresis , vol.30 , pp. 3682-3690
    • Pereira, R.1    Phillips, C.2    Alves, C.3    Amorim, A.4    Carracedo, A.5    Gusmao, L.6
  • 10
    • 84863780114 scopus 로고    scopus 로고
    • Performance of two 17 locus forensic identification STR kits- Applied Biosystem's AmpFlSTR and Promega's PowerPlex ESI17 kits
    • PMID: 22266064
    • Tvedebrink T, Mogensen HS, Stene MC, Morling N (2012) Performance of two 17 locus forensic identification STR kits- Applied Biosystem's AmpFlSTR and Promega's PowerPlex ESI17 kits. Forensic Sci Int Genetics 6: 523-531. doi: 10.1016/j.fsigen.2011.12.006 PMID: 22266064
    • (2012) Forensic Sci Int Genetics , vol.6 , pp. 523-531
    • Tvedebrink, T.1    Mogensen, H.S.2    Stene, M.C.3    Morling, N.4
  • 11
    • 84892728064 scopus 로고    scopus 로고
    • Biology and genetics of new autosomal STR loci useful for forensic DNA analysis
    • Butler JM, Hill CR (2012) Biology and genetics of new autosomal STR loci useful for forensic DNA analysis. Forensic Sci Rev 24: 15-26.
    • (2012) Forensic Sci Rev , vol.24 , pp. 15-26
    • Butler, J.M.1    Hill, C.R.2
  • 13
    • 0027320140 scopus 로고
    • DNA extraction from Pleistocene bones by a silica purification method
    • PMID: 8396242
    • Hoss M, Paabo S (1993) DNA extraction from Pleistocene bones by a silica purification method. Nucleic Acids Research 21: 3913-3914. PMID: 8396242
    • (1993) Nucleic Acids Research , vol.21 , pp. 3913-3914
    • Hoss, M.1    Paabo, S.2
  • 14
    • 79952187261 scopus 로고    scopus 로고
    • Survival and recovery of DNA from ancient teeth and bones
    • Adler CJ, Haak W, Donlon D, Cooper A, Consortium TG (2011) Survival and recovery of DNA from ancient teeth and bones. J Archaeol Sci 38: 956-964.
    • (2011) J Archaeol Sci , vol.38 , pp. 956-964
    • Adler, C.J.1    Haak, W.2    Donlon, D.3    Cooper, A.4
  • 15
    • 6344284907 scopus 로고    scopus 로고
    • Naming the dead - Confronting the realities of rapid identification of degraded skeletal remains
    • Edson SM, Ross JP, Coble MD, Parson TJ, Barritt SM (2004) Naming the dead - Confronting the realities of rapid identification of degraded skeletal remains. Forensic Sci Rev 16: 63-90.
    • (2004) Forensic Sci Rev , vol.16 , pp. 63-90
    • Edson, S.M.1    Ross, J.P.2    Coble, M.D.3    Parson, T.J.4    Barritt, S.M.5
  • 16
    • 34248580509 scopus 로고    scopus 로고
    • High efficiency DNA extraction from bone by total demineralization
    • PMID: 19083754
    • Loreille OM, Diegoli TM, Irwin JA, Coble MD, Parsons TJ (2007) High efficiency DNA extraction from bone by total demineralization. Forensic Sci Int Genet 1: 191-195. doi: 10.1016/j.fsigen.2007.02.006 PMID: 19083754
    • (2007) Forensic Sci Int Genet , vol.1 , pp. 191-195
    • Loreille, O.M.1    Diegoli, T.M.2    Irwin, J.A.3    Coble, M.D.4    Parsons, T.J.5
  • 17
    • 34548579114 scopus 로고    scopus 로고
    • Ancient DNA extraction from bones and teeth
    • PMID: 17641642
    • Rohland N, Hofreiter M (2007) Ancient DNA extraction from bones and teeth. Nat Protoc 2: 1756-1762. PMID: 17641642
    • (2007) Nat Protoc , vol.2 , pp. 1756-1762
    • Rohland, N.1    Hofreiter, M.2
  • 18
    • 15744383335 scopus 로고    scopus 로고
    • Biochemical and physical correlates of DNA contamination in archeological human bones and teeth excavated at Matera, Italy
    • Gilbert MT, Rudbeck L, Willerslev E, Hansen AJ, Smith C, Penkman KEH, et al. (2005) Biochemical and physical correlates of DNA contamination in archeological human bones and teeth excavated at Matera, Italy. J Archaeol Sci 32: 785-793.
    • (2005) J Archaeol Sci , vol.32 , pp. 785-793
    • Gilbert, M.T.1    Rudbeck, L.2    Willerslev, E.3    Hansen, A.J.4    Smith, C.5    Penkman, K.E.H.6
  • 19
    • 0038349431 scopus 로고    scopus 로고
    • Development of a quality, high throughput DNA analysis procedure for skeletal samples to assist with the identification of victims from the world trade centre attacks
    • PMID: 12808717
    • Holland MM, Cave CA, Holland CA, Bille TW (2003) Development of a quality, high throughput DNA analysis procedure for skeletal samples to assist with the identification of victims from the world trade centre attacks. Croat Med J 44: 264-272. PMID: 12808717
    • (2003) Croat Med J , vol.44 , pp. 264-272
    • Holland, M.M.1    Cave, C.A.2    Holland, C.A.3    Bille, T.W.4
  • 21
    • 34548218334 scopus 로고    scopus 로고
    • Success rates of nuclear short tandem repeat typing from different skeletal elements
    • PMID: 17696303
    • Milos A, Selmanovic A, Smajlovic L, Huel RL, Katzmarzyk C, Rizvic A, et al. (2007) Success rates of nuclear short tandem repeat typing from different skeletal elements. Croat Med J 48: 486-493. PMID: 17696303
    • (2007) Croat Med J , vol.48 , pp. 486-493
    • Milos, A.1    Selmanovic, A.2    Smajlovic, L.3    Huel, R.L.4    Katzmarzyk, C.5    Rizvic, A.6
  • 22
    • 67650684020 scopus 로고    scopus 로고
    • DNA preservation in skeletal elements from the World Trade Center disaster: Recommendations for mass fatality management
    • PMID: 19486445
    • Mundorff AZ, Bartelink EJ, Mar-Cash E (2009) DNA preservation in skeletal elements from the World Trade Center disaster: recommendations for mass fatality management. J Forensic Sci 54: 739-745. doi: 10.1111/j.1556-4029.2009.01045.x PMID: 19486445
    • (2009) J Forensic Sci , vol.54 , pp. 739-745
    • Mundorff, A.Z.1    Bartelink, E.J.2    Mar-Cash, E.3
  • 23
    • 84858444387 scopus 로고    scopus 로고
    • Automatable full demineralization DNA extraction procedure from degraded skeletal remains
    • PMID: 21885362
    • Amory S, Huel R, Bilic A, Loreille O, Parsons TJ (2012) Automatable full demineralization DNA extraction procedure from degraded skeletal remains. Forensic science international Genetics 6: 398-406. doi: 10.1016/j.fsigen.2011.08.004 PMID: 21885362
    • (2012) Forensic Science International Genetics , vol.6 , pp. 398-406
    • Amory, S.1    Huel, R.2    Bilic, A.3    Loreille, O.4    Parsons, T.J.5
  • 24
    • 74249111651 scopus 로고    scopus 로고
    • A Study of PCR Inhibition Mechanisms Using Real Time PCR
    • PMID: 20015162
    • Opel KL, Chung D, McCord BR (2010) A Study of PCR Inhibition Mechanisms Using Real Time PCR J Forensic Sci 55: 25-33. doi: 10.1111/j.1556-4029.2009.01245.x PMID: 20015162
    • (2010) J Forensic Sci , vol.55 , pp. 25-33
    • Opel, K.L.1    Chung, D.2    McCord, B.R.3
  • 27
    • 0027278557 scopus 로고
    • Instability and decay of the primary structure of DNA
    • PMID: 8469282
    • Lindahl T (1993) instability and decay of the primary structure of DNA. Nature 362: 709-715. PMID: 8469282
    • (1993) Nature , vol.362 , pp. 709-715
    • Lindahl, T.1
  • 28
    • 84868087346 scopus 로고    scopus 로고
    • The half-life of DNA in bone: Measuring decay kinetics in 158 dated fossils
    • PMID: 23055061
    • Allentoft ME, Collins MJ, Harker D, Haile J, Oskam CL, Hale ML, et al. (2012) The half-life of DNA in bone: measuring decay kinetics in 158 dated fossils. Proc R Soc B 279: 4724-4733. doi: 10.1098/rspb.2012.1745 PMID: 23055061
    • (2012) Proc R Soc B , vol.279 , pp. 4724-4733
    • Allentoft, M.E.1    Collins, M.J.2    Harker, D.3    Haile, J.4    Oskam, C.L.5    Hale, M.L.6
  • 29
    • 33748682933 scopus 로고    scopus 로고
    • Quantification of damage in DNA recovered from highly degraded samples - A case study on DNA in faeces
    • Deagle BE, Eveson JP, Jarman SN (2006) Quantification of damage in DNA recovered from highly degraded samples - a case study on DNA in faeces. Frontiers in Zoology 3.
    • (2006) Frontiers in Zoology , vol.3
    • Deagle, B.E.1    Eveson, J.P.2    Jarman, S.N.3
  • 30
    • 67249110285 scopus 로고    scopus 로고
    • New insights from old bones: DNA preservation and degradation in permafrost preserved mammoth remains
    • PMID: 19321502
    • Schwarz C, Debruyne R, Kuch M, McNally E, Schwarcz H, Aubrey AD, et al. (2009) New insights from old bones: DNA preservation and degradation in permafrost preserved mammoth remains. Nucleic Acids Res 37: 3215-3229. doi: 10.1093/nar/gkp159 PMID: 19321502
    • (2009) Nucleic Acids Res , vol.37 , pp. 3215-3229
    • Schwarz, C.1    Debruyne, R.2    Kuch, M.3    McNally, E.4    Schwarcz, H.5    Aubrey, A.D.6
  • 33
    • 0025778691 scopus 로고
    • Characterization of deoxyribonucleic acid (DNA) obtained from teeth subjected to various environmental conditions
    • PMID: 1680960
    • Schwartz TR, Schwartz EA (1991) Characterization of deoxyribonucleic acid (DNA) obtained from teeth subjected to various environmental conditions. J Forensic Sci 36: 979-990. PMID: 1680960
    • (1991) J Forensic Sci , vol.36 , pp. 979-990
    • Schwartz, T.R.1    Schwartz, E.A.2
  • 35
    • 0038011427 scopus 로고    scopus 로고
    • Different Dental Tissues as a Source of DNA for Human Identification in Forensic Cases
    • PMID: 12808723
    • Malaver PC, Yunis JJ (2003) Different Dental Tissues as a Source of DNA for Human Identification in Forensic Cases. Croat Med J 44: 306-309. PMID: 12808723
    • (2003) Croat Med J , vol.44 , pp. 306-309
    • Malaver, P.C.1    Yunis, J.J.2
  • 36
    • 78650874831 scopus 로고    scopus 로고
    • Techniques of dental DNA extraction: Some operative experiences
    • PMID: 20558019
    • Pinchi V, Torricelli F, Nutini AL, Conti M, Iozzi S, Norelli GA (2011) Techniques of dental DNA extraction: Some operative experiences. Forensic Sci Int 204: 111-114. doi: 10.1016/j.forsciint.2010.05.010 PMID: 20558019
    • (2011) Forensic Sci Int , vol.204 , pp. 111-114
    • Pinchi, V.1    Torricelli, F.2    Nutini, A.L.3    Conti, M.4    Iozzi, S.5    Norelli, G.A.6
  • 37
    • 33644613017 scopus 로고    scopus 로고
    • A quantitative PCR assay for the assessment of DNA degradation in forensic samples
    • PMID: 15936161
    • Swango KL, Timken MD, Chong MD, Buoncristiani MR (2006) A quantitative PCR assay for the assessment of DNA degradation in forensic samples. Forensic Sci Int 158: 14-26. PMID: 15936161
    • (2006) Forensic Sci Int , vol.158 , pp. 14-26
    • Swango, K.L.1    Timken, M.D.2    Chong, M.D.3    Buoncristiani, M.R.4
  • 38
    • 34247844547 scopus 로고    scopus 로고
    • A modular real-time PCR concept for determining the quantity and quality of human nuclear and mitochondrial DNA
    • PMID: 19083725
    • Niederstatter H, Kochl S, Grubwieser P, Pavlic M, Steinlechner M, Parson W (2007) A modular real-time PCR concept for determining the quantity and quality of human nuclear and mitochondrial DNA. Forensic Sci Int Genet 1: 29-34. doi: 10.1016/j.fsigen.2006.10.007 PMID: 19083725
    • (2007) Forensic Sci Int Genet , vol.1 , pp. 29-34
    • Niederstatter, H.1    Kochl, S.2    Grubwieser, P.3    Pavlic, M.4    Steinlechner, M.5    Parson, W.6
  • 40
  • 41
    • 47749141812 scopus 로고    scopus 로고
    • Degradation of biomolecules in artificially and naturally aged teeth: Implications for age estimation based on aspartic acid racemization and DNA analysis
    • PMID: 18621493
    • Dobberstein RC, Huppertz J, von Wurmb-Schwark N, Ritz-Timme S (2008) Degradation of biomolecules in artificially and naturally aged teeth: implications for age estimation based on aspartic acid racemization and DNA analysis. Forensic Sci Int 179: 181-191. doi: 10.1016/j.forsciint.2008.05.017 PMID: 18621493
    • (2008) Forensic Sci Int , vol.179 , pp. 181-191
    • Dobberstein, R.C.1    Huppertz, J.2    Von Wurmb-Schwark, N.3    Ritz-Timme, S.4
  • 42
    • 84887092738 scopus 로고    scopus 로고
    • Teeth as a source of DNA for forensic identification of human remains: A review
    • Higgins D, Austin JJ (2013) Teeth as a source of DNA for forensic identification of human remains: A review. Sci Justice.
    • (2013) Sci Justice
    • Higgins, D.1    Austin, J.J.2
  • 43
    • 34250335580 scopus 로고    scopus 로고
    • Thickness of the dental (radicular) cementum: A parameter for estimating age
    • PMID: 17580382
    • Pinchi V, Forestieri AL, Calvitti M (2007) Thickness of the dental (radicular) cementum: a parameter for estimating age. J Forensic Odontostomatol 25: 1-6. PMID: 17580382
    • (2007) J Forensic Odontostomatol , vol.25 , pp. 1-6
    • Pinchi, V.1    Forestieri, A.L.2    Calvitti, M.3
  • 44
    • 84859112401 scopus 로고    scopus 로고
    • Temporal patterns of nucleotide misincorporations and DNA fragmentation in ancient DNA
    • PMID: 22479540
    • Sawyer S, Krause J, Guschanski K, Savolainen V, Paabo S (2012) Temporal patterns of nucleotide misincorporations and DNA fragmentation in ancient DNA. PLoS One 7: e34131. doi: 10.1371/journal.pone.0034131 PMID: 22479540
    • (2012) PLoS One , vol.7
    • Sawyer, S.1    Krause, J.2    Guschanski, K.3    Savolainen, V.4    Paabo, S.5
  • 45
    • 33745750215 scopus 로고    scopus 로고
    • Relative degradation of nuclear and mitochondrial DNA: An experimental approach
    • PMID: 16882217
    • Foran DR (2006) Relative degradation of nuclear and mitochondrial DNA: An experimental approach. J Forensic Sci 51: 766-770. PMID: 16882217
    • (2006) J Forensic Sci , vol.51 , pp. 766-770
    • Foran, D.R.1
  • 46
    • 0033064929 scopus 로고    scopus 로고
    • DNA preservation: A microsatellite-DNA study on ancient skeletal remains
    • PMID: 10435438
    • Burger J, Hummel S, Herrmann B, Henke W (1999) DNA preservation: A microsatellite-DNA study on ancient skeletal remains. Electrophoresis 20: 1722-1728. PMID: 10435438
    • (1999) Electrophoresis , vol.20 , pp. 1722-1728
    • Burger, J.1    Hummel, S.2    Herrmann, B.3    Henke, W.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.