메뉴 건너뛰기




Volumn 5, Issue , 2017, Pages 19-25

Eliminating a global regulator of carbon catabolite repression enhances the conversion of aromatic lignin monomers to muconate in Pseudomonas putida KT2440

Author keywords

Carbon catabolite repression; Catabolite repression control; ciscis Muconate; Crc; Lignin valorization; Muconic acid; Pseudomonas putida KT2440

Indexed keywords

4 HYDROXYBENZOIC ACID; ACETIC ACID; CARBON; CATABOLITE REPRESSION CONTROL PROTEIN; FERULIC ACID; GLUCOSE; LIGNIN; MUCONIC ACID; OXYGENASE; PARA COUMARIC ACID; REGULATOR PROTEIN; UNCLASSIFIED DRUG; VANILLIC ACID;

EID: 85021366231     PISSN: None     EISSN: 22140301     Source Type: Journal    
DOI: 10.1016/j.meteno.2017.05.002     Document Type: Article
Times cited : (96)

References (40)
  • 2
    • 0025873742 scopus 로고
    • Allelic exchange in Escherichia coli using the Bacillus subtilis sacB gene and a temperature-sensitive pSC101 replicon
    • Blomfield, I.C., Vaughn, V., Rest, R.F., Eisenstein, B.I., Allelic exchange in Escherichia coli using the Bacillus subtilis sacB gene and a temperature-sensitive pSC101 replicon. Mol. Microbiol. 5 (1991), 1447–1457.
    • (1991) Mol. Microbiol. , vol.5 , pp. 1447-1457
    • Blomfield, I.C.1    Vaughn, V.2    Rest, R.F.3    Eisenstein, B.I.4
  • 3
    • 78649333094 scopus 로고    scopus 로고
    • Computational prediction of the Crc regulon identifies genus-wide and species-specific targets of catabolite repression control in Pseudomonas bacteria
    • Browne, P., Barret, M., O'Gara, F., Morrissey, J.P., Computational prediction of the Crc regulon identifies genus-wide and species-specific targets of catabolite repression control in Pseudomonas bacteria. BMC Microbiol, 10, 2010, 300, 10.1186/1471-2180-10-300.
    • (2010) BMC Microbiol , vol.10 , pp. 300
    • Browne, P.1    Barret, M.2    O'Gara, F.3    Morrissey, J.P.4
  • 4
    • 84883809509 scopus 로고    scopus 로고
    • IDPQuantify: combining precursor intensity with spectral counts for protein and peptide quantification
    • Chen, Y.-Y., Chambers, M.C., Li, M., Ham, A.-J.L., Turner, J.L., Zhang, B., Tabb, D.L., IDPQuantify: combining precursor intensity with spectral counts for protein and peptide quantification. J. Proteome Res. 12 (2013), 4111–4121, 10.1021/pr400438q.
    • (2013) J. Proteome Res. , vol.12 , pp. 4111-4121
    • Chen, Y.-Y.1    Chambers, M.C.2    Li, M.3    Ham, A.-J.L.4    Turner, J.L.5    Zhang, B.6    Tabb, D.L.7
  • 5
    • 32244448730 scopus 로고    scopus 로고
    • A 10-min method for preparation of highly electrocompetent Pseudomonas aeruginosa cells: application for DNA fragment transfer between chromosomes and plasmid transformation
    • Choi, K.-H., Kumar, A., Schweizer, H.P., A 10-min method for preparation of highly electrocompetent Pseudomonas aeruginosa cells: application for DNA fragment transfer between chromosomes and plasmid transformation. J. Microbiol. Methods 64 (2006), 391–397, 10.1016/j.mimet.2005.06.001.
    • (2006) J. Microbiol. Methods , vol.64 , pp. 391-397
    • Choi, K.-H.1    Kumar, A.2    Schweizer, H.P.3
  • 6
    • 47549110972 scopus 로고    scopus 로고
    • Carbon catabolite repression in bacteria: many ways to make the most out of nutrients
    • Görke, B., Stülke, J., Carbon catabolite repression in bacteria: many ways to make the most out of nutrients. Nat. Rev. Microbiol. 6 (2008), 613–624, 10.1038/nrmicro1932.
    • (2008) Nat. Rev. Microbiol. , vol.6 , pp. 613-624
    • Görke, B.1    Stülke, J.2
  • 7
    • 84871936356 scopus 로고    scopus 로고
    • The translational repressor Crc controls the Pseudomonas putida benzoate and alkane catabolic pathways using a multi-tier regulation strategy
    • Hernández-Arranz, S., Moreno, R., Rojo, F., The translational repressor Crc controls the Pseudomonas putida benzoate and alkane catabolic pathways using a multi-tier regulation strategy. Environ. Microbiol. 15 (2013), 227–241, 10.1111/j.1462-2920.2012.02863.x.
    • (2013) Environ. Microbiol. , vol.15 , pp. 227-241
    • Hernández-Arranz, S.1    Moreno, R.2    Rojo, F.3
  • 9
    • 84930198715 scopus 로고    scopus 로고
    • Aromatic catabolic pathway selection for optimal production of pyruvate and lactate from lignin
    • Johnson, C.W., Beckham, G.T., Aromatic catabolic pathway selection for optimal production of pyruvate and lactate from lignin. Metab. Eng. 28 (2015), 240–247, 10.1016/j.ymben.2015.01.005.
    • (2015) Metab. Eng. , vol.28 , pp. 240-247
    • Johnson, C.W.1    Beckham, G.T.2
  • 10
    • 84964949918 scopus 로고    scopus 로고
    • Enhancing muconic acid production from glucose and lignin-derived aromatic compounds via increased protocatechuate decarboxylase activity
    • Johnson, C.W., Salvachúa, D., Khanna, P., Smith, H., Peterson, D.J., Beckham, G.T., Enhancing muconic acid production from glucose and lignin-derived aromatic compounds via increased protocatechuate decarboxylase activity. Metab. Eng. Commun. 3 (2016), 111–119, 10.1016/j.meteno.2016.04.002.
    • (2016) Metab. Eng. Commun. , vol.3 , pp. 111-119
    • Johnson, C.W.1    Salvachúa, D.2    Khanna, P.3    Smith, H.4    Peterson, D.J.5    Beckham, G.T.6
  • 12
    • 84983606964 scopus 로고    scopus 로고
    • Quantification of acidic compounds in complex biomass-derived streams
    • Karp, E.M., Nimlos, C.T., Deutch, S., Salvachúa, D., Quantification of acidic compounds in complex biomass-derived streams. Green Chem. 18 (2016), 4750–4760, 10.1039/C6GC00868B.
    • (2016) Green Chem. , vol.18 , pp. 4750-4760
    • Karp, E.M.1    Nimlos, C.T.2    Deutch, S.3    Salvachúa, D.4
  • 14
    • 85010822437 scopus 로고    scopus 로고
    • Correlation between genome reduction and bacterial growth
    • Kurokawa, M., Seno, S., Matsuda, H., Ying, B.-W., Correlation between genome reduction and bacterial growth. DNA Res., 2016, 10.1093/dnares/dsw035.
    • (2016) DNA Res.
    • Kurokawa, M.1    Seno, S.2    Matsuda, H.3    Ying, B.-W.4
  • 15
    • 84961139983 scopus 로고    scopus 로고
    • Influence of the Crc regulator on the hierarchical use of carbon sources from a complete medium in Pseudomonas
    • La Rosa, R., Behrends, V., Williams, H.D., Bundy, J.G., Rojo, F., Influence of the Crc regulator on the hierarchical use of carbon sources from a complete medium in Pseudomonas. Environ. Microbiol. 18 (2016), 807–818, 10.1111/1462-2920.13126.
    • (2016) Environ. Microbiol. , vol.18 , pp. 807-818
    • La Rosa, R.1    Behrends, V.2    Williams, H.D.3    Bundy, J.G.4    Rojo, F.5
  • 16
    • 84940972994 scopus 로고    scopus 로고
    • The Crc/CrcZ-CrcY global regulatory system helps the integration of gluconeogenic and glycolytic metabolism in Pseudomonas putida
    • La Rosa, R., Nogales, J., Rojo, F., The Crc/CrcZ-CrcY global regulatory system helps the integration of gluconeogenic and glycolytic metabolism in Pseudomonas putida. Environ. Microbiol. 17 (2015), 3362–3378, 10.1111/1462-2920.12812.
    • (2015) Environ. Microbiol. , vol.17 , pp. 3362-3378
    • La Rosa, R.1    Nogales, J.2    Rojo, F.3
  • 17
    • 84928718106 scopus 로고    scopus 로고
    • Genome reduction boosts heterologous gene expression in Pseudomonas putida
    • Lieder, S., Nikel, P.I., de Lorenzo, V., Takors, R., Genome reduction boosts heterologous gene expression in Pseudomonas putida. Microb. Cell Fact., 14, 2015, 23, 10.1186/s12934-015-0207-7.
    • (2015) Microb. Cell Fact. , vol.14 , pp. 23
    • Lieder, S.1    Nikel, P.I.2    de Lorenzo, V.3    Takors, R.4
  • 18
    • 84955169464 scopus 로고    scopus 로고
    • Production of diethyl terephthalate from biomass-derived muconic acid
    • Lu, R., Lu, F., Chen, J., Yu, W., Huang, Q., Zhang, J., Xu, J., Production of diethyl terephthalate from biomass-derived muconic acid. Angew. Chem. Int. Ed. 55 (2015), 249–253, 10.1002/anie.201509149.
    • (2015) Angew. Chem. Int. Ed. , vol.55 , pp. 249-253
    • Lu, R.1    Lu, F.2    Chen, J.3    Yu, W.4    Huang, Q.5    Zhang, J.6    Xu, J.7
  • 20
    • 84964313870 scopus 로고    scopus 로고
    • Pseudomonas 2.0: genetic upgrading of P. putida KT2440 as an enhanced host for heterologous gene expression
    • Martínez-García, E., Nikel, P.I., Aparicio, T., de Lorenzo, V., Pseudomonas 2.0: genetic upgrading of P. putida KT2440 as an enhanced host for heterologous gene expression. Microb. Cell Fact., 13, 2014, 159, 10.1186/s12934-014-0159-3.
    • (2014) Microb. Cell Fact. , vol.13 , pp. 159
    • Martínez-García, E.1    Nikel, P.I.2    Aparicio, T.3    de Lorenzo, V.4
  • 21
    • 1342346618 scopus 로고    scopus 로고
    • The Pseudomonas putida Crc global regulator controls the expression of genes from several chromosomal catabolic pathways for aromatic compounds
    • Morales, G., Linares, J.F., Beloso, A., Albar, J.P., Martínez, J.L., Rojo, F., The Pseudomonas putida Crc global regulator controls the expression of genes from several chromosomal catabolic pathways for aromatic compounds. J. Bacteriol. 186 (2004), 1337–1344, 10.1128/JB.186.5.1337-1344.2004.
    • (2004) J. Bacteriol. , vol.186 , pp. 1337-1344
    • Morales, G.1    Linares, J.F.2    Beloso, A.3    Albar, J.P.4    Martínez, J.L.5    Rojo, F.6
  • 22
    • 84921841177 scopus 로고    scopus 로고
    • The Crc and Hfq proteins of Pseudomonas putida cooperate in catabolite repression and formation of ribonucleic acid complexes with specific target motifs
    • Moreno, R., Hernández-Arranz, S., La Rosa, R., Yuste, L., Madhushani, A., Shingler, V., Rojo, F., The Crc and Hfq proteins of Pseudomonas putida cooperate in catabolite repression and formation of ribonucleic acid complexes with specific target motifs. Environ. Microbiol. 17 (2014), 105–118, 10.1111/1462-2920.12499.
    • (2014) Environ. Microbiol. , vol.17 , pp. 105-118
    • Moreno, R.1    Hernández-Arranz, S.2    La Rosa, R.3    Yuste, L.4    Madhushani, A.5    Shingler, V.6    Rojo, F.7
  • 23
    • 67649201763 scopus 로고    scopus 로고
    • The Pseudomonas putida Crc global regulator controls the hierarchical assimilation of amino acids in a complete medium: evidence from proteomic and genomic analyses
    • Moreno, R., Martínez-Gomariz, M., Yuste, L., Gil, C., Rojo, F., The Pseudomonas putida Crc global regulator controls the hierarchical assimilation of amino acids in a complete medium: evidence from proteomic and genomic analyses. Proteomics 9 (2009), 2910–2928, 10.1002/pmic.200800918.
    • (2009) Proteomics , vol.9 , pp. 2910-2928
    • Moreno, R.1    Martínez-Gomariz, M.2    Yuste, L.3    Gil, C.4    Rojo, F.5
  • 24
    • 75649099354 scopus 로고    scopus 로고
    • The Crc global regulator binds to an unpaired A-rich motif at the Pseudomonas putida alkS mRNA coding sequence and inhibits translation initiation
    • Moreno, R., Marzi, S., Romby, P., Rojo, F., The Crc global regulator binds to an unpaired A-rich motif at the Pseudomonas putida alkS mRNA coding sequence and inhibits translation initiation. Nucleic Acids Res 37 (2009), 7678–7690, 10.1093/nar/gkp825.
    • (2009) Nucleic Acids Res , vol.37 , pp. 7678-7690
    • Moreno, R.1    Marzi, S.2    Romby, P.3    Rojo, F.4
  • 25
    • 85002652996 scopus 로고    scopus 로고
    • Gradient elution moving boundary electrophoresis enables rapid analysis of acids in complex biomass-derived streams
    • Munson, M.S., Karp, E.M., Nimlos, C.T., Salit, M., Beckham, G.T., Gradient elution moving boundary electrophoresis enables rapid analysis of acids in complex biomass-derived streams. ACS Sustain. Chem. Eng. 4 (2016), 7175–7185, 10.1021/acssuschemeng.6b02076.
    • (2016) ACS Sustain. Chem. Eng. , vol.4 , pp. 7175-7185
    • Munson, M.S.1    Karp, E.M.2    Nimlos, C.T.3    Salit, M.4    Beckham, G.T.5
  • 27
    • 77955132055 scopus 로고    scopus 로고
    • Carbon catabolite repression in Pseudomonas: optimizing metabolic versatility and interactions with the environment
    • Rojo, F., Carbon catabolite repression in Pseudomonas: optimizing metabolic versatility and interactions with the environment. FEMS Microbiol. Rev., 2010, 1–27, 10.1111/j.1574-6976.2010.00218.x.
    • (2010) FEMS Microbiol. Rev. , pp. 1-27
    • Rojo, F.1
  • 29
    • 85021354305 scopus 로고    scopus 로고
    • Biomass-derived monomers for performance-differentiated fiber reinforced polymer composites
    • Rorrer, N.A., Vardon, D.R., Dorgan, J.R., Gjersing, E.J., Beckham, G.T., Biomass-derived monomers for performance-differentiated fiber reinforced polymer composites. Green Chem., 311, 2017, 10.1039/C7GC00320J.
    • (2017) Green Chem. , vol.311
    • Rorrer, N.A.1    Vardon, D.R.2    Dorgan, J.R.3    Gjersing, E.J.4    Beckham, G.T.5
  • 30
    • 0028289983 scopus 로고
    • Small mobilizable multi-purpose cloning vectors derived from the Escherichia coli plasmids pK18 and pK19: selection of defined deletions in the chromosome of Corynebacterium glutamicum
    • Schäfer, A., Tauch, A., Jäger, W., Kalinowski, J., Thierbach, G., Pühler, A., Small mobilizable multi-purpose cloning vectors derived from the Escherichia coli plasmids pK18 and pK19: selection of defined deletions in the chromosome of Corynebacterium glutamicum. Gene 145 (1994), 69–73.
    • (1994) Gene , vol.145 , pp. 69-73
    • Schäfer, A.1    Tauch, A.2    Jäger, W.3    Kalinowski, J.4    Thierbach, G.5    Pühler, A.6
  • 31
    • 76049120271 scopus 로고    scopus 로고
    • Small RNA as global regulator of carbon catabolite repression in Pseudomonas aeruginosa
    • Sonnleitner, E., Abdou, L., Haas, D., Small RNA as global regulator of carbon catabolite repression in Pseudomonas aeruginosa. Proc. Natl. Acad. Sci. USA 106 (2009), 21866–21871, 10.1073/pnas.0910308106.
    • (2009) Proc. Natl. Acad. Sci. USA , vol.106 , pp. 21866-21871
    • Sonnleitner, E.1    Abdou, L.2    Haas, D.3
  • 32
    • 84868107469 scopus 로고    scopus 로고
    • Novel targets of the CbrAB/Crc carbon catabolite control system revealed by transcript abundance in Pseudomonas aeruginosa
    • Sonnleitner, E., Valentini, M., Wenner, N., Haichar, F.E.Z., Haas, D., Lapouge, K., Novel targets of the CbrAB/Crc carbon catabolite control system revealed by transcript abundance in Pseudomonas aeruginosa. PLoS One, 7, 2012, 10.1371/journal.pone.0044637.
    • (2012) PLoS One , vol.7
    • Sonnleitner, E.1    Valentini, M.2    Wenner, N.3    Haichar, F.E.Z.4    Haas, D.5    Lapouge, K.6
  • 33
    • 84909954184 scopus 로고    scopus 로고
    • Enhancement of protocatechuate decarboxylase activity for the effective production of muconate from lignin-related aromatic compounds
    • Sonoki, T., Morooka, M., Sakamoto, K., Otsuka, Y., Nakamura, M., Jellison, J., Goodell, B., Enhancement of protocatechuate decarboxylase activity for the effective production of muconate from lignin-related aromatic compounds. J. Biotechnol. 192 (2014), 71–77, 10.1016/j.jbiotec.2014.10.027.
    • (2014) J. Biotechnol. , vol.192 , pp. 71-77
    • Sonoki, T.1    Morooka, M.2    Sakamoto, K.3    Otsuka, Y.4    Nakamura, M.5    Jellison, J.6    Goodell, B.7
  • 34
    • 33847401893 scopus 로고    scopus 로고
    • MyriMatch: highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis
    • Tabb, D.L., Fernando, C.G., Chambers, M.C., MyriMatch: highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis. J. Proteome Res. 6 (2007), 654–661, 10.1021/pr0604054.
    • (2007) J. Proteome Res. , vol.6 , pp. 654-661
    • Tabb, D.L.1    Fernando, C.G.2    Chambers, M.C.3
  • 35
    • 84976274986 scopus 로고    scopus 로고
    • The Perseus computational platform for comprehensive analysis of (prote)omics data
    • Tyanova, S., Temu, T., Sinitcyn, P., Carlson, A., Hein, M.Y., Geiger, T., Mann, M., Cox, J., The Perseus computational platform for comprehensive analysis of (prote)omics data. Nat. Methods 13 (2016), 731–740, 10.1038/nmeth.3901.
    • (2016) Nat. Methods , vol.13 , pp. 731-740
    • Tyanova, S.1    Temu, T.2    Sinitcyn, P.3    Carlson, A.4    Hein, M.Y.5    Geiger, T.6    Mann, M.7    Cox, J.8
  • 39
    • 84863246260 scopus 로고    scopus 로고
    • Rewiring carbon catabolite repression for microbial cell factory
    • Vinuselvi, P., Kim, M.-K., Lee, S.-K., Ghim, C.-M., Rewiring carbon catabolite repression for microbial cell factory. BMB Rep. 45 (2012), 59–70, 10.5483/BMBRep.2012.45.2.59.
    • (2012) BMB Rep. , vol.45 , pp. 59-70
    • Vinuselvi, P.1    Kim, M.-K.2    Lee, S.-K.3    Ghim, C.-M.4
  • 40
    • 77953307637 scopus 로고    scopus 로고
    • The catalytic valorization of lignin for the production of renewable chemicals
    • Zakzeski, J., Bruijnincx, P.C.A., Jongerius, A.L., Weckhuysen, B.M., The catalytic valorization of lignin for the production of renewable chemicals. Chem. Rev. 110 (2010), 3552–3599, 10.1021/cr900354u.
    • (2010) Chem. Rev. , vol.110 , pp. 3552-3599
    • Zakzeski, J.1    Bruijnincx, P.C.A.2    Jongerius, A.L.3    Weckhuysen, B.M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.