메뉴 건너뛰기




Volumn 7, Issue 1, 2017, Pages

Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS PROTEIN; LEUCINE ZIPPER PROTEIN; TRANSCRIPTION FACTOR; ZINC;

EID: 85021170673     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/s41598-017-03903-6     Document Type: Article
Times cited : (45)

References (79)
  • 1
    • 0034671865 scopus 로고    scopus 로고
    • Arabidopsis transcription factors: Genome-wide comparative analysis among eukaryotes
    • Riechmann, J. L., et al. Arabidopsis transcription factors: Genome-wide comparative analysis among eukaryotes. Science 290, 2105-2110 (2000).
    • (2000) Science , vol.290 , pp. 2105-2110
    • Riechmann, J.L.1
  • 2
    • 0036468365 scopus 로고    scopus 로고
    • Eukaryotic transcription factors
    • Warren, A. J. Eukaryotic transcription factors. Curr. Opin. Struct. Biol. 12, 107-114 (2002).
    • (2002) Curr. Opin. Struct. Biol. , vol.12 , pp. 107-114
    • Warren, A.J.1
  • 4
    • 0024370748 scopus 로고
    • Scissors-grip model for DNA recognition by a family of leucine zipper proteins
    • Vinson, C. R., Sigler, P. B., McKnight, S. L. Scissors-grip model for DNA recognition by a family of leucine zipper proteins. Science246, 911-916 (1989).
    • (1989) Science , vol.246 , pp. 911-916
    • Vinson, C.R.1    Sigler, P.B.2    McKnight, S.L.3
  • 5
    • 0027049805 scopus 로고
    • The GCN4 basic region leucine zipper binds DNA as a dimer ofuninterrupted alpha helices: Crystal structure of the protein-DNA complex
    • Ellenberger, T. E., Brandl, C. J., Struhl, K., Harrison, S. C. The GCN4 basic region leucine zipper binds DNA as a dimer ofuninterrupted alpha helices: Crystal structure of the protein-DNA complex. Cell 71, 1223-1237 (1992).
    • (1992) Cell , vol.71 , pp. 1223-1237
    • Ellenberger, T.E.1    Brandl, C.J.2    Struhl, K.3    Harrison, S.C.4
  • 6
    • 33646157076 scopus 로고    scopus 로고
    • Deciphering B-ZIP transcription factor interactions in vitro and in vivo
    • Vinson, C., Acharya, A., Taparowsky, E. J. Deciphering B-ZIP transcription factor interactions in vitro and in vivo. Biochim.Biophys. Acta 1759, 4-12 (2006).
    • (2006) Biochim.Biophys. Acta , vol.1759 , pp. 4-12
    • Vinson, C.1    Acharya, A.2    Taparowsky, E.J.3
  • 7
    • 3042699706 scopus 로고    scopus 로고
    • Dimerization specificity of all 67 B-ZIP motifs in Arabidopsis thaliana: A comparison to Homo sapiens B-ZIPmotifs
    • Deppmann, C. D. Dimerization specificity of all 67 B-ZIP motifs in Arabidopsis thaliana: A comparison to Homo sapiens B-ZIPmotifs. Nucleic Acids Res 32, 3435-3445 (2004).
    • (2004) Nucleic Acids Res , vol.32 , pp. 3435-3445
    • Deppmann, C.D.1
  • 8
    • 33748049771 scopus 로고    scopus 로고
    • Cross-species annotation of basic leucine zipper factor interactions: Insight intothe evolution of closed interaction networks
    • Deppmann, C. D., Alvania, R. S., Taparowsky, E. J. Cross-species annotation of basic leucine zipper factor interactions: Insight intothe evolution of closed interaction networks. Mol. Biol. Evol. 23, 1480-1492 (2006).
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 1480-1492
    • Deppmann, C.D.1    Alvania, R.S.2    Taparowsky, E.J.3
  • 9
    • 43049153250 scopus 로고    scopus 로고
    • Post-translational regulation of plant bZIP factors
    • Schütze, K., Harter, K., Chaban, C. Post-translational regulation of plant bZIP factors. Trends Plant Sci 13, 247-255 (2008).
    • (2008) Trends Plant Sci , vol.13 , pp. 247-255
    • Schütze, K.1    Harter, K.2    Chaban, C.3
  • 10
    • 0033828167 scopus 로고    scopus 로고
    • A genomic perspective on plant transcription factors
    • Riechmann, J. L., Ratcliffe, O. J. A genomic perspective on plant transcription factors. Curr. Opin. Plant Biol. 3, 423-434 (2000).
    • (2000) Curr. Opin. Plant Biol. , vol.3 , pp. 423-434
    • Riechmann, J.L.1    Ratcliffe, O.J.2
  • 11
    • 33644794386 scopus 로고    scopus 로고
    • Transcription factor families have much higher expansion rates in plants than in animals
    • Shiu, S.-H. Transcription factor families have much higher expansion rates in plants than in animals. Plant Physiol. 139, 18-26 (2005).
    • (2005) Plant Physiol. , vol.139 , pp. 18-26
    • Shiu, S.-H.1
  • 12
    • 79953254420 scopus 로고    scopus 로고
    • Evolutionary and comparative analysis of MYB and bHLH plant transcriptionfactors
    • Feller, A., Machemer, K., Braun, E. L., Grotewold, E. Evolutionary and comparative analysis of MYB and bHLH plant transcriptionfactors. Plant J 66, 94-116 (2011).
    • (2011) Plant J , vol.66 , pp. 94-116
    • Feller, A.1    MacHemer, K.2    Braun, E.L.3    Grotewold, E.4
  • 13
    • 27144519666 scopus 로고    scopus 로고
    • Genome duplication and the origin of angiosperms
    • DeBodt, S., Maere, S., VandePeer, Y. Genome duplication and the origin of angiosperms. Trends Ecol. Evol. 20, 591-597 (2005).
    • (2005) Trends Ecol. Evol. , vol.20 , pp. 591-597
    • De Bodt, S.1    Maere, S.2    Vande Peer, Y.3
  • 14
    • 84867775180 scopus 로고    scopus 로고
    • Evolutionary dynamics and functional specialization of plant paralogs formed by whole andsmall-scale genome duplications
    • Carretero-Paulet, L., Fares, M. A. Evolutionary dynamics and functional specialization of plant paralogs formed by whole andsmall-scale genome duplications. Mol. Biol. Evol 29, 3541-3551 (2012).
    • (2012) Mol. Biol. Evol , vol.29 , pp. 3541-3551
    • Carretero-Paulet, L.1    Fares, M.A.2
  • 15
    • 84982899807 scopus 로고    scopus 로고
    • Evolution of gene duplication in plants
    • Panchy, N., Lehti-Shiu, M. D., Shiu, S.-H. Evolution of gene duplication in plants. Plant Physiol. 171, 2294-2316 (2016).
    • (2016) Plant Physiol. , vol.171 , pp. 2294-2316
    • Panchy, N.1    Lehti-Shiu, M.D.2    Shiu, S.-H.3
  • 16
    • 0034634395 scopus 로고    scopus 로고
    • The evolutionary fate and consequences of duplicate genes
    • Lynch, M., Conery, J. S. The evolutionary fate and consequences of duplicate genes. Science 290, 1151-1155 (2000).
    • (2000) Science , vol.290 , pp. 1151-1155
    • Lynch, M.1    Conery, J.S.2
  • 17
    • 0037500141 scopus 로고    scopus 로고
    • Evolution by gene duplication: An update
    • Zhang, J. Evolution by gene duplication: An update. Trends Ecol. Evol. 18, 292-298 (2003).
    • (2003) Trends Ecol. Evol. , vol.18 , pp. 292-298
    • Zhang, J.1
  • 19
    • 84960421688 scopus 로고    scopus 로고
    • Gene duplicability of core genes is highly consistent across all angiosperms
    • Li, Z., et al. Gene duplicability of core genes is highly consistent across all angiosperms. Plant Cell 28, 326-344 (2016).
    • (2016) Plant Cell , vol.28 , pp. 326-344
    • Li, Z.1
  • 20
    • 84958231433 scopus 로고    scopus 로고
    • Of dups and dinos: Evolution at the K/Pg boundary
    • Lohaus, R., Van de Peer, Y. Of dups and dinos: Evolution at the K/Pg boundary. Curr. Opin. Plant Biol. 30, 62-69 (2016).
    • (2016) Curr. Opin. Plant Biol. , vol.30 , pp. 62-69
    • Lohaus, R.1    Van De Peer, Y.2
  • 21
    • 57749085421 scopus 로고    scopus 로고
    • Importance of lineage-specific expansion of plant tandemduplicates in the adaptive response to environmental stimuli
    • Hanada, K., Zou, C., Lehti-Shiu, M. D., Shinozaki, K., Shiu, S.-H. Importance of lineage-specific expansion of plant tandemduplicates in the adaptive response to environmental stimuli. Plant Physiol. 148, 993-1003 (2008).
    • (2008) Plant Physiol. , vol.148 , pp. 993-1003
    • Hanada, K.1    Zou, C.2    Lehti-Shiu, M.D.3    Shinozaki, K.4    Shiu, S.-H.5
  • 22
    • 84901041577 scopus 로고    scopus 로고
    • BZIPs and WRKYs: Two large transcription factor families executing two differentfunctional strategies
    • Llorca, C. M., Potschin, M., Zentgraf, U. bZIPs and WRKYs: Two large transcription factor families executing two differentfunctional strategies. Front. Plant Sci. 5, 169 (2014).
    • (2014) Front. Plant Sci. , vol.5 , pp. 169
    • Llorca, C.M.1    Potschin, M.2    Zentgraf, U.3
  • 23
    • 51449092810 scopus 로고    scopus 로고
    • The role of bZIP transcription factors in green plant evolution: Adaptive features emerging from four foundergenes
    • Correâ, L. G. G., et al. The role of bZIP transcription factors in green plant evolution: Adaptive features emerging from four foundergenes. PLoS One 3, e2944 (2008).
    • (2008) PLoS One , vol.3 , pp. e2944
    • Correâ, L.G.G.1
  • 24
    • 0036516002 scopus 로고    scopus 로고
    • BZIP transcription factors in Arabidopsis
    • Jakoby, M., et al. bZIP transcription factors in Arabidopsis. Trends Plant Sci 7, 106-111 (2002).
    • (2002) Trends Plant Sci , vol.7 , pp. 106-111
    • Jakoby, M.1
  • 25
    • 1942539165 scopus 로고    scopus 로고
    • The Arabidopsis transcription factor HY5 integrates light and hormone signalingpathways
    • Cluis, C. P., Mouchel, C. F., Hardtke, C. S. The Arabidopsis transcription factor HY5 integrates light and hormone signalingpathways. Plant J 38, 332-347 (2004).
    • (2004) Plant J , vol.38 , pp. 332-347
    • Cluis, C.P.1    Mouchel, C.F.2    Hardtke, C.S.3
  • 26
    • 23644461931 scopus 로고    scopus 로고
    • FD, a bZIP protein mediating signals from the floral pathway integrator FT at the shoot apex
    • Abe, M. FD, a bZIP protein mediating signals from the floral pathway integrator FT at the shoot apex. Science 309, 1052-1056 (2005).
    • (2005) Science , vol.309 , pp. 1052-1056
    • Abe, M.1
  • 27
    • 56949097027 scopus 로고    scopus 로고
    • Expression patterns within the Arabidopsis C/S1 bZIP transcription factor network: Availability ofheterodimerization partners controls gene expression during stress response and development
    • Weltmeier, F., et al. Expression patterns within the Arabidopsis C/S1 bZIP transcription factor network: Availability ofheterodimerization partners controls gene expression during stress response and development. Plant Mol. Biol. 69, 107-119 (2009).
    • (2009) Plant Mol. Biol. , vol.69 , pp. 107-119
    • Weltmeier, F.1
  • 28
    • 84876327670 scopus 로고    scopus 로고
    • Plant bZIP transcription factors responsive to pathogens: A review
    • Alves, M., et al. Plant bZIP transcription factors responsive to pathogens: A review. Int. J. Mol. Sci. 14, 7815-7828 (2013).
    • (2013) Int. J. Mol. Sci. , vol.14 , pp. 7815-7828
    • Alves, M.1
  • 29
    • 84940984471 scopus 로고    scopus 로고
    • SnRK1-triggered switch of bZIP63 dimerization mediates the low-energy response in plants
    • Mair, A., et al. SnRK1-triggered switch of bZIP63 dimerization mediates the low-energy response in plants. Elife 4, e05828 (2015).
    • (2015) Elife , vol.4 , pp. e05828
    • Mair, A.1
  • 30
    • 51249110831 scopus 로고    scopus 로고
    • Differential transcript regulation in Arabidopsis thaliana and the halotolerantLobularia maritima indicates genes with potential function in plant salt adaptation
    • Popova, O. V., Yang, O., Dietz, K.-J., Golldack, D. Differential transcript regulation in Arabidopsis thaliana and the halotolerantLobularia maritima indicates genes with potential function in plant salt adaptation. Gene 423, 142-148 (2008).
    • (2008) Gene , vol.423 , pp. 142-148
    • Popova, O.V.1    Yang, O.2    Dietz, K.-J.3    Golldack, D.4
  • 31
    • 62549153491 scopus 로고    scopus 로고
    • The Arabidopsis basic leucine zipper transcription factor AtbZIP24 regulates complex transcriptional networksinvolved in abiotic stress resistance
    • Yang, O., et al. The Arabidopsis basic leucine zipper transcription factor AtbZIP24 regulates complex transcriptional networksinvolved in abiotic stress resistance. Gene 436, 45-55 (2009).
    • (2009) Gene , vol.436 , pp. 45-55
    • Yang, O.1
  • 32
    • 77953385066 scopus 로고    scopus 로고
    • Arabidopsis thaliana transcription factors bZIP19 and bZIP23 regulate the adaptation to zinc deficiency
    • Assuncąõ, A. G. L., et al. Arabidopsis thaliana transcription factors bZIP19 and bZIP23 regulate the adaptation to zinc deficiency.Proc. Natl. Acad. Sci. USA. 107, 10296-10301 (2010).
    • (2010) Proc. Natl. Acad. Sci. USA. , vol.107 , pp. 10296-10301
    • Assuncąõ, A.G.L.1
  • 33
    • 79551676692 scopus 로고    scopus 로고
    • Regulation of the adaptation to zinc deficiency in plants
    • Assuncąõ, A. G. L., Schat, H., Aarts, M. G. M. Regulation of the adaptation to zinc deficiency in plants. Plant Signal. Behav 5, 1553-1555 (2010).
    • (2010) Plant Signal. Behav , vol.5 , pp. 1553-1555
    • Assuncąõ, A.G.L.1    Schat, H.2    Aarts, M.G.M.3
  • 34
    • 84943626805 scopus 로고    scopus 로고
    • Identification of putative target genes of bZIP19, a transcription factor essential for Arabidopsis adaptation to Zndeficiency in roots
    • Inaba, S., et al. Identification of putative target genes of bZIP19, a transcription factor essential for Arabidopsis adaptation to Zndeficiency in roots. Plant J. 84, 323-334 (2015).
    • (2015) Plant J. , vol.84 , pp. 323-334
    • Inaba, S.1
  • 35
    • 84883018885 scopus 로고    scopus 로고
    • Model of how plants sense zinc deficiency
    • Assuncąõ, A. G. L., et al. Model of how plants sense zinc deficiency. Metallomics 5, 1110-1116 (2013).
    • (2013) Metallomics , vol.5 , pp. 1110-1116
    • Assuncąõ, A.G.L.1
  • 36
    • 84957081977 scopus 로고    scopus 로고
    • Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply
    • Azevedo, H., et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply.Genomics Data 7, 256-258 (2016).
    • (2016) Genomics Data , vol.7 , pp. 256-258
    • Azevedo, H.1
  • 37
    • 0037853748 scopus 로고    scopus 로고
    • Phylogenetic relationships within cation transporter families of Arabidopsis
    • Mäser, P., et al. Phylogenetic relationships within cation transporter families of Arabidopsis. Plant Physiol 126, 1646-1667 (2001).
    • (2001) Plant Physiol , vol.126 , pp. 1646-1667
    • Mäser, P.1
  • 38
    • 84864696893 scopus 로고    scopus 로고
    • The banana (Musa acuminata) genome and the evolution of monocotyledonous plants
    • D'Hont, A., et al. The banana (Musa acuminata) genome and the evolution of monocotyledonous plants. Nature 488, 213-217 (2012).
    • (2012) Nature , vol.488 , pp. 213-217
    • D'Hont, A.1
  • 39
    • 80053386792 scopus 로고    scopus 로고
    • The genome of the mesopolyploid crop species Brassica rapa
    • Wang, X., et al. The genome of the mesopolyploid crop species Brassica rapa. Nat. Genet. 43, 1035-1039 (2011).
    • (2011) Nat. Genet. , vol.43 , pp. 1035-1039
    • Wang, X.1
  • 40
    • 84946752365 scopus 로고    scopus 로고
    • A time-calibrated road map of Brassicaceae species radiation andevolutionary history
    • Hohmann, N., Wolf, E. M., Lysak, M. A., Koch, M. A. A time-calibrated road map of Brassicaceae species radiation andevolutionary history. Plant Cell 27, 2770-2784 (2015).
    • (2015) Plant Cell , vol.27 , pp. 2770-2784
    • Hohmann, N.1    Wolf, E.M.2    Lysak, M.A.3    Koch, M.A.4
  • 41
    • 0037468758 scopus 로고    scopus 로고
    • Unravelling angiosperm genome evolution by phylogenetic analysis ofchromosomal duplication events
    • Bowers, J. E., Chapman, B. A., Rong, J., Paterson, A. H. Unravelling angiosperm genome evolution by phylogenetic analysis ofchromosomal duplication events. Nature 422, 433-438 (2003).
    • (2003) Nature , vol.422 , pp. 433-438
    • Bowers, J.E.1    Chapman, B.A.2    Rong, J.3    Paterson, A.H.4
  • 42
    • 49349107518 scopus 로고    scopus 로고
    • Lysine acetylation: Codified crosstalk with other posttranslational modifications
    • Yang, X.-J., Seto, E. Lysine acetylation: Codified crosstalk with other posttranslational modifications. Mol. Cell 31, 449-461 (2008).
    • (2008) Mol. Cell , vol.31 , pp. 449-461
    • Yang, X.-J.1    Seto, E.2
  • 43
    • 1642523628 scopus 로고    scopus 로고
    • Comparative microarray analysis of Arabidopsis thalianaand Arabidopsis halleri roots identifies nicotianamine synthase, a ZIP transporter and other genes as potential metalhyperaccumulation factors
    • Weber, M., Harada, E., Vess, C., Roepenack-Lahaye, E. v., Clemens, S. Comparative microarray analysis of Arabidopsis thalianaand Arabidopsis halleri roots identifies nicotianamine synthase, a ZIP transporter and other genes as potential metalhyperaccumulation factors. Plant J. 37, 269-281 (2004).
    • (2004) Plant J. , vol.37 , pp. 269-281
    • Weber, M.1    Harada, E.2    Vess, C.3    Roepenack-Lahaye, E.V.4    Clemens, S.5
  • 44
    • 57749169737 scopus 로고    scopus 로고
    • Metal movement within the plant: Contribution of nicotianamine and yellow stripe 1-like transporters
    • Curie, C., et al. Metal movement within the plant: Contribution of nicotianamine and yellow stripe 1-like transporters. Ann. Bot 103, 1-11 (2009).
    • (2009) Ann. Bot , vol.103 , pp. 1-11
    • Curie, C.1
  • 45
    • 84859041176 scopus 로고    scopus 로고
    • Elevated nicotianamine levels in Arabidopsis halleri roots play a key role in zinc hyperaccumulation
    • Deinlein, U., et al. Elevated nicotianamine levels in Arabidopsis halleri roots play a key role in zinc hyperaccumulation. Plant Cell 24, 708-723 (2012).
    • (2012) Plant Cell , vol.24 , pp. 708-723
    • Deinlein, U.1
  • 46
    • 0034192475 scopus 로고    scopus 로고
    • The ZIP family of metal transporters
    • Guerinot, M. L. The ZIP family of metal transporters. Biochim. Biophys. Acta 1465, 190-198 (2000).
    • (2000) Biochim. Biophys. Acta , vol.1465 , pp. 190-198
    • Guerinot, M.L.1
  • 47
  • 48
    • 63449095925 scopus 로고    scopus 로고
    • Arabidopsis IRT3 is a zinc-regulated and plasma membrane localized zinc/iron transporter
    • Lin, Y.-F., et al. Arabidopsis IRT3 is a zinc-regulated and plasma membrane localized zinc/iron transporter. New Phytol 182, 392-404(2009).
    • (2009) New Phytol , vol.182 , pp. 392-404
    • Lin, Y.-F.1
  • 49
    • 84871767604 scopus 로고    scopus 로고
    • Transport properties of members of the ZIP family in plants and their role in Znand Mn homeostasis
    • Milner, M. J., Seamon, J., Craft, E., Kochian, L. V. Transport properties of members of the ZIP family in plants and their role in Znand Mn homeostasis. J. Exp. Bot. 64, 369-381 (2013).
    • (2013) J. Exp. Bot. , vol.64 , pp. 369-381
    • Milner, M.J.1    Seamon, J.2    Craft, E.3    Kochian, L.V.4
  • 50
    • 0032499739 scopus 로고    scopus 로고
    • Identification of a family of zinc transporter genes from Arabidopsis that respond to zinc deficiency
    • Grotz, N., et al. Identification of a family of zinc transporter genes from Arabidopsis that respond to zinc deficiency. Proc. Natl. Acad.Sci. USA 95, 7220-7224 (1998).
    • (1998) Proc. Natl. Acad.Sci. USA , vol.95 , pp. 7220-7224
    • Grotz, N.1
  • 51
    • 33751119021 scopus 로고    scopus 로고
    • Large expression differences in genes for iron and zinc homeostasis, stress response, lignin biosynthesisdistinguish roots of Arabidopsis thaliana and the related metal hyperaccumulator Thlaspi caerulescens
    • van de Mortel, J. E., et al. Large expression differences in genes for iron and zinc homeostasis, stress response, lignin biosynthesisdistinguish roots of Arabidopsis thaliana and the related metal hyperaccumulator Thlaspi caerulescens. Plant Physiol. 142, 1127-1147(2006).
    • (2006) Plant Physiol. , vol.142 , pp. 1127-1147
    • Van De Mortel, J.E.1
  • 52
    • 84903603289 scopus 로고    scopus 로고
    • Zinc'ing sensibly: Controlling zinc homeostasis at the transcriptional level
    • Choi, S., Bird, A. J. Zinc'ing sensibly: Controlling zinc homeostasis at the transcriptional level. Metallomics 1198-1215 (2014).
    • (2014) Metallomics , pp. 1198-1215
    • Choi, S.1    Bird, A.J.2
  • 53
    • 84961132630 scopus 로고    scopus 로고
    • Expression of the ZNT1 zinc transporter from the metalhyperaccumulator Noccaea caerulescens confers enhanced zinc and cadmium tolerance and accumulation to Arabidopsis thaliana
    • Lin, Y.-F., Hassan, Z., Talukdar, S., Schat, H., Aarts, M. G. M. Expression of the ZNT1 zinc transporter from the metalhyperaccumulator Noccaea caerulescens confers enhanced zinc and cadmium tolerance and accumulation to Arabidopsis thaliana.PLoS One 11, e0149750 (2016).
    • (2016) PLoS One , vol.11 , pp. e0149750
    • Lin, Y.-F.1    Hassan, Z.2    Talukdar, S.3    Schat, H.4    Aarts, M.G.M.5
  • 54
    • 0027263978 scopus 로고
    • Plant bZIP protein DNA binding specificity
    • Izawa, T., Foster, R., Chua, N.-H. Plant bZIP protein DNA binding specificity. J. Mol. Biol. 230, 1131-1144 (1993).
    • (1993) J. Mol. Biol. , vol.230 , pp. 1131-1144
    • Izawa, T.1    Foster, R.2    Chua, N.-H.3
  • 55
    • 28544442229 scopus 로고    scopus 로고
    • OsZIP4, a novel zinc-regulated zinc transporter in rice
    • Ishimaru, Y., et al. OsZIP4, a novel zinc-regulated zinc transporter in rice. J. Exp. Bot. 56, 3207-3214 (2005).
    • (2005) J. Exp. Bot. , vol.56 , pp. 3207-3214
    • Ishimaru, Y.1
  • 56
    • 77953175650 scopus 로고    scopus 로고
    • Response to zinc deficiency of two rice lines with contrasting tolerance is determined by root growth maintenance andorganic acid exudation rates, not by zinc-transporter activity
    • Widodo, et al. Response to zinc deficiency of two rice lines with contrasting tolerance is determined by root growth maintenance andorganic acid exudation rates, not by zinc-transporter activity. New Phytol 186, 400-414 (2010).
    • (2010) New Phytol , vol.186 , pp. 400-414
    • Widodo1
  • 57
    • 77955056857 scopus 로고    scopus 로고
    • Zinc deficiency-inducible OsZIP8 encodes a plasma membrane-localized zinctransporter in rice
    • Lee, S., Kim, S. A., Lee, J., Guerinot, M. L., An, G. Zinc deficiency-inducible OsZIP8 encodes a plasma membrane-localized zinctransporter in rice. Mol. Cells 29, 551-558 (2010).
    • (2010) Mol. Cells , vol.29 , pp. 551-558
    • Lee, S.1    Kim, S.A.2    Lee, J.3    Guerinot, M.L.4    An, G.5
  • 58
    • 84869492554 scopus 로고    scopus 로고
    • Molecular mechanisms of zinc uptake and translocation in rice
    • Bashir, K., Ishimaru, Y., Nishizawa, N. K. Molecular mechanisms of zinc uptake and translocation in rice. Plant Soil 361, 189-201 (2012).
    • (2012) Plant Soil , vol.361 , pp. 189-201
    • Bashir, K.1    Ishimaru, Y.2    Nishizawa, N.K.3
  • 59
    • 79955104313 scopus 로고    scopus 로고
    • Origin of land plants: Do conjugating green algae hold the key
    • Wodniok, S., et al. Origin of land plants: Do conjugating green algae hold the key BMC Evol. Biol. 11, 104 (2011).
    • (2011) BMC Evol. Biol. , vol.11 , pp. 104
    • Wodniok, S.1
  • 62
    • 84949255601 scopus 로고    scopus 로고
    • Divergence times and the evolution of morphologicalcomplexity in an early land plant lineage (Marchantiopsida) with a slow molecular rate
    • Villarreal, A. J. C., Crandall-Stotler, B. J., Hart, M. L., Long, D. G., Forrest, L. L. Divergence times and the evolution of morphologicalcomplexity in an early land plant lineage (Marchantiopsida) with a slow molecular rate. New Phytol. 209, 1734-1746 (2016).
    • (2016) New Phytol. , vol.209 , pp. 1734-1746
    • Villarreal, A.J.C.1    Crandall-Stotler, B.J.2    Hart, M.L.3    Long, D.G.4    Forrest, L.L.5
  • 63
    • 84876531652 scopus 로고    scopus 로고
    • PGDD: A database of gene and genome duplication in plants
    • Lee, T.-H., Tang, H., Wang, X., Paterson, A. H. PGDD: A database of gene and genome duplication in plants. Nucleic Acids Res 41, D1152-D1158 (2013).
    • (2013) Nucleic Acids Res , vol.41 , pp. D1152-D1158
    • Lee, T.-H.1    Tang, H.2    Wang, X.3    Paterson, A.H.4
  • 64
    • 84856585935 scopus 로고    scopus 로고
    • Phytozome: A comparative platform for green plant genomics
    • Goodstein, D. M., et al. Phytozome: A comparative platform for green plant genomics. Nucleic Acids Res 40, D1178-D1186 (2012).
    • (2012) Nucleic Acids Res , vol.40 , pp. D1178-D1186
    • Goodstein, D.M.1
  • 65
    • 84856569514 scopus 로고    scopus 로고
    • Dissecting plant genomes with the PLAZA comparative genomics platform
    • Van Bel, M., et al. Dissecting plant genomes with the PLAZA comparative genomics platform. Plant Physiol. 158, 590-600 (2012).
    • (2012) Plant Physiol. , vol.158 , pp. 590-600
    • Van Bel, M.1
  • 66
    • 84946061001 scopus 로고    scopus 로고
    • PLAZA 3.0: An access point for plant comparative genomics
    • Proost, S., et al. PLAZA 3.0: An access point for plant comparative genomics. Nucleic Acids Res 43, D974-D981 (2015).
    • (2015) Nucleic Acids Res , vol.43 , pp. D974-D981
    • Proost, S.1
  • 68
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • Edgar, R. C. MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32, 1792-1797 (2004).
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 69
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • Castresana, J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol. Biol. Evol. 17, 540-552 (2000).
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 540-552
    • Castresana, J.1
  • 70
    • 23144440940 scopus 로고    scopus 로고
    • PRALINE: A multiple sequence alignment toolbox that integrates homology-extended and secondarystructure information
    • Simossis, V. A., Heringa, J. PRALINE: A multiple sequence alignment toolbox that integrates homology-extended and secondarystructure information. Nucleic Acids Res 33, W289-W294 (2005).
    • (2005) Nucleic Acids Res , vol.33 , pp. W289-W294
    • Simossis, V.A.1    Heringa, J.2
  • 72
    • 0028685490 scopus 로고
    • Fitting a mixture model by expectation maximization to discover motifs in biopolymers
    • Bailey, T. L., Elkan, C. Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proceedings. Int.Conf. Intell. Syst. Mol. Biol. 2, 28-36 (1994).
    • (1994) Proceedings. Int.Conf. Intell. Syst. Mol. Biol. , vol.2 , pp. 28-36
    • Bailey, T.L.1    Elkan, C.2
  • 73
    • 0031877016 scopus 로고    scopus 로고
    • Combining evidence using p-values: Application to sequence homology searches
    • Bailey, T. L., Gribskov, M. Combining evidence using p-values: Application to sequence homology searches. Bioinformatics 14, 48-54 (1998).
    • (1998) Bioinformatics , vol.14 , pp. 48-54
    • Bailey, T.L.1    Gribskov, M.2
  • 74
    • 1342288026 scopus 로고    scopus 로고
    • Affy-analysis of Affymetrix GeneChip data at the probe level
    • Gautier, L., Cope, L., Bolstad, B. M., Irizarry, R. A. affy-analysis of Affymetrix GeneChip data at the probe level. Bioinformatics 20, 307-315 (2004).
    • (2004) Bioinformatics , vol.20 , pp. 307-315
    • Gautier, L.1    Cope, L.2    Bolstad, B.M.3    Irizarry, R.A.4
  • 75
    • 84926507971 scopus 로고    scopus 로고
    • Limma powers differential expression analyses for RNA-sequencing and microarray studies
    • Ritchie, M. E., et al. limma powers differential expression analyses for RNA-sequencing and microarray studies. Nucleic Acids Res 43, e47-e47 (2015).
    • (2015) Nucleic Acids Res , vol.43 , pp. e47-e47
    • Ritchie, M.E.1
  • 76
    • 0142121516 scopus 로고    scopus 로고
    • Exploration normalization, summaries of high density oligonucleotide array probe level data
    • Irizarry, R. A. Exploration, normalization, summaries of high density oligonucleotide array probe level data. Biostatistics 4, 249-264 (2003).
    • (2003) Biostatistics , vol.4 , pp. 249-264
    • Irizarry, R.A.1
  • 77
    • 0001677717 scopus 로고
    • Controlling the false discovery rate-A practical and powerful approach to multiple testing
    • Benjamini, Y., Hochberg, Y. Controlling the false discovery rate-A practical and powerful approach to multiple testing. J. R. Stat.Soc. Ser. B Methodol 57, 289-300 (1995).
    • (1995) J. R. Stat.Soc. Ser. B Methodol , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 78
    • 58749109023 scopus 로고    scopus 로고
    • Genevestigator V3: A reference expression database for the meta-analysis of transcriptomes
    • Hruz, T., et al. Genevestigator V3: A reference expression database for the meta-analysis of transcriptomes. Adv. Bioinformatics 2008, 1-5 (2008).
    • (2008) Adv. Bioinformatics , vol.2008 , pp. 1-5
    • Hruz, T.1
  • 79
    • 84975282678 scopus 로고    scopus 로고
    • SUMO proteases ULP1c and ULP1d are required for development and osmotic stress responses in Arabidopsisthaliana
    • Castro, P. H., et al. SUMO proteases ULP1c and ULP1d are required for development and osmotic stress responses in Arabidopsisthaliana. Plant Mol. Biol. 92, 143-159 (2016).
    • (2016) Plant Mol. Biol. , vol.92 , pp. 143-159
    • Castro, P.H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.