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Volumn 139, Issue 1, 2005, Pages 18-26

Transcription factor families have much higher expansion rates in plants than in animals

Author keywords

[No Author keywords available]

Indexed keywords

CROPS; DNA; FUNGI; GENES;

EID: 33644794386     PISSN: 00320889     EISSN: None     Source Type: Journal    
DOI: 10.1104/pp.105.065110     Document Type: Review
Times cited : (190)

References (62)
  • 1
    • 0028861418 scopus 로고
    • The PHD finger: Implication for chromatin-mediated transcriptional regulation
    • Aasland R, Gibson TJ, Stewart AF (1995) The PHD finger: implication for chromatin-mediated transcriptional regulation Trends Biochem Sci 20: 56-59
    • (1995) Trends Biochem Sci , vol.20 , pp. 56-59
    • Aasland, R.1    Gibson, T.J.2    Stewart, A.F.3
  • 2
    • 0033891353 scopus 로고    scopus 로고
    • Extensive duplication and reshuffling in the Arabidopsis genome
    • Blanc G, Barakat A, Guyot R, Cooke R, Delseny M (2000) Extensive duplication and reshuffling in the Arabidopsis genome. Plant Cell 12: 1093-1101
    • (2000) Plant Cell , vol.12 , pp. 1093-1101
    • Blanc, G.1    Barakat, A.2    Guyot, R.3    Cooke, R.4    Delseny, M.5
  • 3
    • 3142732892 scopus 로고    scopus 로고
    • Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution
    • Blanc G, Wolfe KH (2004) Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution. Plant Cell 16: 1679-1691
    • (2004) Plant Cell , vol.16 , pp. 1679-1691
    • Blanc, G.1    Wolfe, K.H.2
  • 4
    • 0032463343 scopus 로고    scopus 로고
    • RING fingers and B-boxes: Zinc-binding protein-protein interaction domains
    • Borden KL (1998) RING fingers and B-boxes: zinc-binding protein-protein interaction domains. Biochem Cell Biol 76: 351-358
    • (1998) Biochem Cell Biol , vol.76 , pp. 351-358
    • Borden, K.L.1
  • 5
    • 0029977716 scopus 로고    scopus 로고
    • The RING finger domain: A recent example of a sequence-structure family
    • Borden KL, Freemont PS (1996) The RING finger domain: a recent example of a sequence-structure family Curr Opin Struct Biol 6: 395-401
    • (1996) Curr Opin Struct Biol , vol.6 , pp. 395-401
    • Borden, K.L.1    Freemont, P.S.2
  • 6
    • 0034141287 scopus 로고    scopus 로고
    • The YABBY gene family and abaxial cell fate
    • Bowman JL (2000) The YABBY gene family and abaxial cell fate. Curr Opin Plant Biol 3: 17-22
    • (2000) Curr Opin Plant Biol , vol.3 , pp. 17-22
    • Bowman, J.L.1
  • 7
    • 0034625265 scopus 로고    scopus 로고
    • Endless forms: The evolution of gene regulation and morphological diversity
    • Carroll SB (2000) Endless forms: the evolution of gene regulation and morphological diversity. Cell 101: 577-580
    • (2000) Cell , vol.101 , pp. 577-580
    • Carroll, S.B.1
  • 8
    • 2442517979 scopus 로고    scopus 로고
    • Dating the monocot-dicot divergence and the origin of core eudicots using whole chloroplast genomes
    • Chaw SM, Chang CC, Chen HL, Li WH (2004) Dating the monocot-dicot divergence and the origin of core eudicots using whole chloroplast genomes. J Mol Evol 58: 424-441
    • (2004) J Mol Evol , vol.58 , pp. 424-441
    • Chaw, S.M.1    Chang, C.C.2    Chen, H.L.3    Li, W.H.4
  • 9
    • 0033119581 scopus 로고    scopus 로고
    • The TCP domain: A motif found in proteins regulating plant growth and development
    • Cubas P, Lauter N, Doebley J, Coen E (1999) The TCP domain: a motif found in proteins regulating plant growth and development. Plant J 18: 215-222
    • (1999) Plant J , vol.18 , pp. 215-222
    • Cubas, P.1    Lauter, N.2    Doebley, J.3    Coen, E.4
  • 10
    • 0028483236 scopus 로고
    • CG-1, a parsley light-induced DNA-binding protein
    • da Costa e Silva O (1994) CG-1, a parsley light-induced DNA-binding protein. Plant Mol Biol 25: 921-924
    • (1994) Plant Mol Biol , vol.25 , pp. 921-924
    • Da Costa, E.1    Silva, O.2
  • 11
    • 0347492019 scopus 로고    scopus 로고
    • AGEIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors
    • Davuluri RV, Sun H, Palaniswamy SK, Matthews N, Molina C, Kurtz M, Grotewold E (2003) AGEIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors. BMC Bioinformatics 4: 25
    • (2003) BMC Bioinformatics , vol.4 , pp. 25
    • Davuluri, R.V.1    Sun, H.2    Palaniswamy, S.K.3    Matthews, N.4    Molina, C.5    Kurtz, M.6    Grotewold, E.7
  • 12
    • 0032125381 scopus 로고    scopus 로고
    • Transcriptional regulators and the evolution of plant form
    • Doebley J, Lukens L (1998) Transcriptional regulators and the evolution of plant form. Plant Cell 10: 1075-1082
    • (1998) Plant Cell , vol.10 , pp. 1075-1082
    • Doebley, J.1    Lukens, L.2
  • 13
    • 0032582521 scopus 로고    scopus 로고
    • Mak21p of Saccharomyces cerevisiae, a homolog of human CAATT-binding protein, is essential for 60 S ribosomal subunit biogenesis
    • Edskes HK, Ohtake Y, Wickner RB (1998) Mak21p of Saccharomyces cerevisiae, a homolog of human CAATT-binding protein, is essential for 60 S ribosomal subunit biogenesis. J Biol Chem 273: 28912-28920
    • (1998) J Biol Chem , vol.273 , pp. 28912-28920
    • Edskes, H.K.1    Ohtake, Y.2    Wickner, R.B.3
  • 14
    • 4544294517 scopus 로고    scopus 로고
    • Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors
    • Ernst HA, Nina Olsen A, Skriver K, Larsen S, LU Leggio L (2004) Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors. EMBO Rep 5: 297-303
    • (2004) EMBO Rep , vol.5 , pp. 297-303
    • Ernst, H.A.1    Nina Olsen, A.2    Skriver, K.3    Larsen, S.4    Leggio, L.U.5
  • 17
    • 0024849126 scopus 로고
    • Domains of the SFL1 protein of yeasts are homologous to Myc oncoproteins or yeast heat-shock transcription factor
    • Fujita A, Kikuchi Y, Kuhara S, Misumi Y, Matsumoto S, Kobayashi H (1989) Domains of the SFL1 protein of yeasts are homologous to Myc oncoproteins or yeast heat-shock transcription factor. Gene 85: 321-328
    • (1989) Gene , vol.85 , pp. 321-328
    • Fujita, A.1    Kikuchi, Y.2    Kuhara, S.3    Misumi, Y.4    Matsumoto, S.5    Kobayashi, H.6
  • 18
    • 0036094818 scopus 로고    scopus 로고
    • An insect molecular clock dates the origin of the insects and accords with palaeontological and biogeographic landmarks
    • Gaunt MW, Miles MA (2002) An insect molecular clock dates the origin of the insects and accords with palaeontological and biogeographic landmarks. Mol Biol Evol 19: 748-761
    • (2002) Mol Biol Evol , vol.19 , pp. 748-761
    • Gaunt, M.W.1    Miles, M.A.2
  • 21
    • 0029610034 scopus 로고
    • The immunoglobulin heavy-chain matrix-associating regions are bound by Bright: A B cell-specific trans-activator that describes a new DNA-binding protein family
    • Herrscher RF, Kaplan MH, Lelsz DL, Das C, Scheuermann R, Tucker PW (1995) The immunoglobulin heavy-chain matrix-associating regions are bound by Bright: a B cell-specific trans-activator that describes a new DNA-binding protein family. Genes Dev 9: 3067-3082
    • (1995) Genes Dev , vol.9 , pp. 3067-3082
    • Herrscher, R.F.1    Kaplan, M.H.2    Lelsz, D.L.3    Das, C.4    Scheuermann, R.5    Tucker, P.W.6
  • 22
    • 0029899685 scopus 로고    scopus 로고
    • Interaction of Vav with ENX-1, a putative transcriptional regulator of homeobox gene expression
    • Hobert O, Jallal B, Ullrich A (1996) Interaction of Vav with ENX-1, a putative transcriptional regulator of homeobox gene expression. Mol Cell Biol 16: 3066-3073
    • (1996) Mol Cell Biol , vol.16 , pp. 3066-3073
    • Hobert, O.1    Jallal, B.2    Ullrich, A.3
  • 23
    • 0038141065 scopus 로고    scopus 로고
    • Parallel evolution by gene duplication in the genomes of two unicellular fungi
    • Hughes AL, Friedman R (2003) Parallel evolution by gene duplication in the genomes of two unicellular fungi. Genome Res 13: 794-799
    • (2003) Genome Res , vol.13 , pp. 794-799
    • Hughes, A.L.1    Friedman, R.2
  • 24
    • 0030048899 scopus 로고    scopus 로고
    • A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA
    • Klein J, Saedler H, Huijser P (1996) A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol Gen Genet 250: 7-16
    • (1996) Mol Gen Genet , vol.250 , pp. 7-16
    • Klein, J.1    Saedler, H.2    Huijser, P.3
  • 25
    • 0023411757 scopus 로고
    • The highly conserved amino-terminal region of the protein encoded by the v-myb oncogene functions as a DNA-binding domain
    • Klempnauer KH, Sippel AE (1987) The highly conserved amino-terminal region of the protein encoded by the v-myb oncogene functions as a DNA-binding domain. EMBO J 6: 2719-2725
    • (1987) EMBO J , vol.6 , pp. 2719-2725
    • Klempnauer, K.H.1    Sippel, A.E.2
  • 27
    • 0023517347 scopus 로고
    • Zinc fingers: A novel protein fold for nucleic acid recognition
    • Klug A, Rhodes D (1987) Zinc fingers: a novel protein fold for nucleic acid recognition. Cold Spring Harb Symp Quant Biol 52: 473-482
    • (1987) Cold Spring Harb Symp Quant Biol , vol.52 , pp. 473-482
    • Klug, A.1    Rhodes, D.2
  • 28
    • 0024295767 scopus 로고
    • The leucine zipper: A hypothetical structure common to a new class of DNA binding proteins
    • Landschule WH, Johnson PF, McKnight SL (1988) The leucine zipper: a hypothetical structure common to a new class of DNA binding proteins. Science 240: 1759-1764
    • (1988) Science , vol.240 , pp. 1759-1764
    • Landschule, W.H.1    Johnson, P.F.2    McKnight, S.L.3
  • 29
    • 0037819447 scopus 로고    scopus 로고
    • Transcription regulation and animal diversity
    • Levine M, Tjian R. (2003) Transcription regulation and animal diversity. Nature 424: 147-151
    • (2003) Nature , vol.424 , pp. 147-151
    • Levine, M.1    Tjian, R.2
  • 31
    • 0029189481 scopus 로고
    • Transcription factors 2: Helix-loop-helix
    • Littlewood TD, Evan GI (1995) Transcription factors 2: helix-loop-helix. Protein Profile 2: 621-702
    • (1995) Protein Profile , vol.2 , pp. 621-702
    • Littlewood, T.D.1    Evan, G.I.2
  • 32
    • 0029240488 scopus 로고
    • Ethylene-inducible DNA binding proteins that interact with an ethylene-responsive element
    • Ohme-Takagi M, Shinshi H (1995) Ethylene-inducible DNA binding proteins that interact with an ethylene-responsive element. Plant Cell 7: 173-182
    • (1995) Plant Cell , vol.7 , pp. 173-182
    • Ohme-Takagi, M.1    Shinshi, H.2
  • 34
    • 0038157152 scopus 로고    scopus 로고
    • Dosage sensitivity and the evolution of gene families in yeast
    • Papp B, Pal C, Hurst LD (2003) Dosage sensitivity and the evolution of gene families in yeast. Nature 424: 194-197
    • (2003) Nature , vol.424 , pp. 194-197
    • Papp, B.1    Pal, C.2    Hurst, L.D.3
  • 35
    • 0029102041 scopus 로고
    • Structure of serum response factor core bound to DNA
    • Pellegrini L, Tan S, Richmond TJ (1995) Structure of serum response factor core bound to DNA. Nature 376: 490-498
    • (1995) Nature , vol.376 , pp. 490-498
    • Pellegrini, L.1    Tan, S.2    Richmond, T.J.3
  • 36
    • 0033118897 scopus 로고    scopus 로고
    • The GRAS gene family in Arabidopsis: Sequence characterization and basic expression analysis of the scarecrow-like genes
    • Pysh LD, Wysocka-Diller JW, Camilleri C, Bouchez D, Benfey PN (1999) The GRAS gene family in Arabidopsis: sequence characterization and basic expression analysis of the SCARECROW-LIKE genes. Plant J 18: 111-119
    • (1999) Plant J , vol.18 , pp. 111-119
    • Pysh, L.D.1    Wysocka-Diller, J.W.2    Camilleri, C.3    Bouchez, D.4    Benfey, P.N.5
  • 37
    • 0025196283 scopus 로고
    • The A.T-DNA-binding domain of mammalian high mobility group I chromosomal proteins. A novel peptide motif for recognizing DNA structure
    • Reeves R, Nissen MS (1990) The A.T-DNA-binding domain of mammalian high mobility group I chromosomal proteins. A novel peptide motif for recognizing DNA structure. J Biol Chem 265: 8573-8582
    • (1990) J Biol Chem , vol.265 , pp. 8573-8582
    • Reeves, R.1    Nissen, M.S.2
  • 38
    • 0030453635 scopus 로고    scopus 로고
    • Archerpeton anthracos from the Joggins formation of Nova Scotia: A microsaur, not a reptile
    • Reisz RR, Modesto SP (1996) Archerpeton anthracos from the Joggins formation of Nova Scotia: a microsaur, not a reptile. Can J Earth Sci 33: 703-709
    • (1996) Can J Earth Sci , vol.33 , pp. 703-709
    • Reisz, R.R.1    Modesto, S.P.2
  • 40
    • 0033547409 scopus 로고    scopus 로고
    • A plant regulator controlling development of symbiotic root nodules
    • Schauser L, Roussis A, Stiller J, Stougaard J (1999) A plant regulator controlling development of symbiotic root nodules. Nature 402: 191-195
    • (1999) Nature , vol.402 , pp. 191-195
    • Schauser, L.1    Roussis, A.2    Stiller, J.3    Stougaard, J.4
  • 43
    • 4444363053 scopus 로고    scopus 로고
    • Genome duplication led to highly selective expansion of the Arabidopsis thaliana proteome
    • Seoighe C, Gehring C (2004) Genome duplication led to highly selective expansion of the Arabidopsis thaliana proteome. Trends Genet 20: 461-464
    • (2004) Trends Genet , vol.20 , pp. 461-464
    • Seoighe, C.1    Gehring, C.2
  • 44
    • 0032479339 scopus 로고    scopus 로고
    • Functional analyses of the Dof domain, a zinc finger DNA-binding domain, in a pumpkin DNA-binding protein AOBP
    • Shimofurutani N, Kisu Y, Suzuki M, Esaka M (1998) Functional analyses of the Dof domain, a zinc finger DNA-binding domain, in a pumpkin DNA-binding protein AOBP. FEBS Lett 430: 251-256
    • (1998) FEBS Lett , vol.430 , pp. 251-256
    • Shimofurutani, N.1    Kisu, Y.2    Suzuki, M.3    Esaka, M.4
  • 45
    • 2442591728 scopus 로고    scopus 로고
    • Comparative analysis of the receptor-like kinase family in Arabidopsis and rice
    • Shiu SH, Karlowski WM, Pan R, Tzeng YH, Mayer KF, Li WH (2004) Comparative analysis of the receptor-like kinase family in Arabidopsis and rice. Plant Cell 16: 1220-1234
    • (2004) Plant Cell , vol.16 , pp. 1220-1234
    • Shiu, S.H.1    Karlowski, W.M.2    Pan, R.3    Tzeng, Y.H.4    Mayer, K.F.5    Li, W.H.6
  • 46
    • 0032417391 scopus 로고    scopus 로고
    • Nuclear events in ethylene signaling: A transcriptional cascade mediated by ethylene-insensitive3 and ethylene-response-factor1
    • Solano R, Stepanova A, Chao Q, Ecker JR (1998) Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1. Genes Dev 12: 3703-3714
    • (1998) Genes Dev , vol.12 , pp. 3703-3714
    • Solano, R.1    Stepanova, A.2    Chao, Q.3    Ecker, J.R.4
  • 49
    • 2642713363 scopus 로고    scopus 로고
    • The conserved B3 domain of VIVIPAROUS1 has a cooperative DNA binding activity
    • Suzuki M, Kao CY, McCarty DR (1997) The conserved B3 domain of VIVIPAROUS1 has a cooperative DNA binding activity. Plant Cell 9: 799-807
    • (1997) Plant Cell , vol.9 , pp. 799-807
    • Suzuki, M.1    Kao, C.Y.2    McCarty, D.R.3
  • 50
  • 51
    • 0030796237 scopus 로고    scopus 로고
    • ARF1, a transcription factor that binds to auxin response elements
    • Ulmasov T, Hagen G, Guilfoyle TJ (1997) ARF1, a transcription factor that binds to auxin response elements. Science 276: 1865-1868
    • (1997) Science , vol.276 , pp. 1865-1868
    • Ulmasov, T.1    Hagen, G.2    Guilfoyle, T.J.3
  • 52
    • 0033768220 scopus 로고    scopus 로고
    • A novel gibberellin-induced gene from rice and its potential regulatory role in item growth
    • van der Knaap E, Kim JH, Kende H (2000) A novel gibberellin-induced gene from rice and its potential regulatory role in item growth. Plant Physiol 122: 695-704
    • (2000) Plant Physiol , vol.122 , pp. 695-704
    • Knaap, E.1    Kim, J.H.2    Kende, H.3
  • 54
    • 0034671866 scopus 로고    scopus 로고
    • The origins of genomic duplications in Arabidopsis
    • Vision TJ, Brown DG, Tanksley SD (2000) The origins of genomic duplications in Arabidopsis. Science 290: 2114-2117
    • (2000) Science , vol.290 , pp. 2114-2117
    • Vision, T.J.1    Brown, D.G.2    Tanksley, S.D.3
  • 55
    • 0029284998 scopus 로고
    • The APETALA2 domain is related to a novel type of DNA binding domain
    • Weigel D (1995) The APETALA2 domain is related to a novel type of DNA binding domain. Plant Cell 7: 388-389
    • (1995) Plant Cell , vol.7 , pp. 388-389
    • Weigel, D.1
  • 57
    • 0033974956 scopus 로고    scopus 로고
    • Genome evolution in polyploids
    • Wendel JF (2000) Genome evolution in polyploids. Plant Mol Biol 42: 225-249
    • (2000) Plant Mol Biol , vol.42 , pp. 225-249
    • Wendel, J.F.1
  • 59
    • 0346734130 scopus 로고    scopus 로고
    • Organismal complexity, protein complexity, and gene duplicability
    • Yang J, Lusk R, Li WH (2003) Organismal complexity, protein complexity, and gene duplicability Proc Natl Acad Sci USA 100: 15661-15665
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 15661-15665
    • Yang, J.1    Lusk, R.2    Li, W.H.3
  • 62
    • 0033559030 scopus 로고    scopus 로고
    • Structural basis of DNA recognition by the heterodimeric cell cycle transcription factor E2F-DR
    • Zheng N, Fraenkel E, Pabo CO, Pavletich NP (1999) Structural basis of DNA recognition by the heterodimeric cell cycle transcription factor E2F-DR Genes Dev 13: 666-674
    • (1999) Genes Dev , vol.13 , pp. 666-674
    • Zheng, N.1    Fraenkel, E.2    Pabo, C.O.3    Pavletich, N.P.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.