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Volumn 69, Issue , 2017, Pages 122-130

Regulation of clustered protocadherin genes in individual neurons

Author keywords

CTCF; DNA methylation; Epigenetic; Neuronal identity; Stochastic expression

Indexed keywords

CADHERIN; DNA; PROTOCADHERIN; TRANSCRIPTION FACTOR CTCF; UNCLASSIFIED DRUG;

EID: 85020378004     PISSN: 10849521     EISSN: 10963634     Source Type: Journal    
DOI: 10.1016/j.semcdb.2017.05.026     Document Type: Review
Times cited : (41)

References (69)
  • 2
    • 0033063445 scopus 로고    scopus 로고
    • A striking organization of a large family of human neural cadherin-like cell adhesion genes
    • Wu, Q., Maniatis, T., A striking organization of a large family of human neural cadherin-like cell adhesion genes. Cell 97 (1999), 779–790.
    • (1999) Cell , vol.97 , pp. 779-790
    • Wu, Q.1    Maniatis, T.2
  • 6
    • 33750078697 scopus 로고    scopus 로고
    • Allelic gene regulation of Pcdh-α and Pcdh-γ clusters involving both monoallelic and biallelic expression in single Purkinje cells
    • Kaneko, R., Kato, H., Kawamura, Y., Esumi, S., Hirayama, T., Hirabayashi, T., Yagi, T., Allelic gene regulation of Pcdh-α and Pcdh-γ clusters involving both monoallelic and biallelic expression in single Purkinje cells. J. Biol. Chem. 281 (2006), 30551–30560.
    • (2006) J. Biol. Chem. , vol.281 , pp. 30551-30560
    • Kaneko, R.1    Kato, H.2    Kawamura, Y.3    Esumi, S.4    Hirayama, T.5    Hirabayashi, T.6    Yagi, T.7
  • 7
    • 84865962958 scopus 로고    scopus 로고
    • Single-neuron diversity generated by Protocadherin-β cluster in mouse central and peripheral nervous systems
    • Hirano, K., Kaneko, R., Izawa, T., Kawaguchi, M., Kitsukawa, T., Yagi, T., Single-neuron diversity generated by Protocadherin-β cluster in mouse central and peripheral nervous systems. Front. Mol. Neurosci. 5 (2012), 1–13.
    • (2012) Front. Mol. Neurosci. , vol.5 , pp. 1-13
    • Hirano, K.1    Kaneko, R.2    Izawa, T.3    Kawaguchi, M.4    Kitsukawa, T.5    Yagi, T.6
  • 8
    • 0020534965 scopus 로고
    • Somatic generation of antibody diversity
    • Tonegawa, S., Somatic generation of antibody diversity. Nature 301 (1983), 575–581.
    • (1983) Nature , vol.301 , pp. 575-581
    • Tonegawa, S.1
  • 9
    • 0027981484 scopus 로고
    • Allelic inactivation regulates olfactory receptor gene expression
    • Chess, A., Simon, I., Cedar, H., Axel, R., Allelic inactivation regulates olfactory receptor gene expression. Cell 78 (1994), 823–834.
    • (1994) Cell , vol.78 , pp. 823-834
    • Chess, A.1    Simon, I.2    Cedar, H.3    Axel, R.4
  • 10
    • 0025825726 scopus 로고
    • A novel multigene family may encode odorant receptors: a molecular basis for odor recognition
    • Buck, L., Axel, R., A novel multigene family may encode odorant receptors: a molecular basis for odor recognition. Cell 65 (1991), 175–187.
    • (1991) Cell , vol.65 , pp. 175-187
    • Buck, L.1    Axel, R.2
  • 12
    • 77957039206 scopus 로고    scopus 로고
    • Combinatorial homophilic interaction between gamma-protocadherin multimers greatly expands the molecular diversity of cell adhesion
    • Schreiner, D., Weiner, J.A., Combinatorial homophilic interaction between gamma-protocadherin multimers greatly expands the molecular diversity of cell adhesion. Proc. Natl. Acad. Sci. U. S. A. 107 (2010), 14893–14898.
    • (2010) Proc. Natl. Acad. Sci. U. S. A. , vol.107 , pp. 14893-14898
    • Schreiner, D.1    Weiner, J.A.2
  • 14
    • 18744410937 scopus 로고    scopus 로고
    • Gamma protocadherins are required for survival of spinal interneurons
    • Wang, X., Weiner, J.A., Levi, S., Craig, A.M., Bradley, A., Sanes, J.R., Gamma protocadherins are required for survival of spinal interneurons. Neuron 36 (2002), 843–854.
    • (2002) Neuron , vol.36 , pp. 843-854
    • Wang, X.1    Weiner, J.A.2    Levi, S.3    Craig, A.M.4    Bradley, A.5    Sanes, J.R.6
  • 16
    • 67651176011 scopus 로고    scopus 로고
    • Protocadherin-α family is required for serotonergic projections to appropriately innervate target brain areas
    • Katori, S., Hamada, S., Noguchi, Y., Fukuda, E., Yamamoto, T., Yamamoto, H., Hasegawa, S., Yagi, T., Protocadherin-α family is required for serotonergic projections to appropriately innervate target brain areas. J. Neurosci. 29 (2009), 9137–9147.
    • (2009) J. Neurosci. , vol.29 , pp. 9137-9147
    • Katori, S.1    Hamada, S.2    Noguchi, Y.3    Fukuda, E.4    Yamamoto, T.5    Yamamoto, H.6    Hasegawa, S.7    Yagi, T.8
  • 17
    • 60149108896 scopus 로고    scopus 로고
    • gamma-Protocadherins regulate neuronal survival but are dispensable for circuit formation in retina
    • Lefebvre, J.L., Zhang, Y., Meister, M., Wang, X., Sanes, J.R., gamma-Protocadherins regulate neuronal survival but are dispensable for circuit formation in retina. Development 135 (2008), 4141–4151.
    • (2008) Development , vol.135 , pp. 4141-4151
    • Lefebvre, J.L.1    Zhang, Y.2    Meister, M.3    Wang, X.4    Sanes, J.R.5
  • 18
    • 84860280592 scopus 로고    scopus 로고
    • γ-Protocadherins control cortical dendrite arborization by regulating the activity of a FAK/PKC/MARCKS signaling pathway
    • Garrett, A.M., Schreiner, D., Lobas, M.A., Weiner, J.A., γ-Protocadherins control cortical dendrite arborization by regulating the activity of a FAK/PKC/MARCKS signaling pathway. Neuron 74 (2012), 269–276.
    • (2012) Neuron , vol.74 , pp. 269-276
    • Garrett, A.M.1    Schreiner, D.2    Lobas, M.A.3    Weiner, J.A.4
  • 19
    • 84963961503 scopus 로고    scopus 로고
    • Homophilic protocadherin cell–cell interactions promote dendrite complexity
    • Molumby, M.J., Keeler, A.B., Weiner, J.A., Homophilic protocadherin cell–cell interactions promote dendrite complexity. Cell Rep. 15 (2016), 1037–1050.
    • (2016) Cell Rep. , vol.15 , pp. 1037-1050
    • Molumby, M.J.1    Keeler, A.B.2    Weiner, J.A.3
  • 25
    • 84883580414 scopus 로고    scopus 로고
    • Genetic basis of neuronal individuality in the mammalian brain
    • Yagi, T., Genetic basis of neuronal individuality in the mammalian brain. J. Neurogenet. 27 (2013), 97–105.
    • (2013) J. Neurogenet. , vol.27 , pp. 97-105
    • Yagi, T.1
  • 26
    • 33845943755 scopus 로고    scopus 로고
    • Identification of long-range regulatory elements in the protocadherin-alpha gene cluster
    • Ribich, S., Tasic, B., Maniatis, T., Identification of long-range regulatory elements in the protocadherin-alpha gene cluster. Proc. Natl. Acad. Sci. U. S. A. 103 (2006), 19719–19724.
    • (2006) Proc. Natl. Acad. Sci. U. S. A. , vol.103 , pp. 19719-19724
    • Ribich, S.1    Tasic, B.2    Maniatis, T.3
  • 27
    • 84864079345 scopus 로고    scopus 로고
    • Molecular codes for neuronal individuality and cell assembly in the brain
    • Yagi, T., Molecular codes for neuronal individuality and cell assembly in the brain. Front. Mol. Neurosci., 5, 2012, 45.
    • (2012) Front. Mol. Neurosci. , vol.5 , pp. 45
    • Yagi, T.1
  • 29
    • 84906875225 scopus 로고    scopus 로고
    • Expansion of stochastic expression repertoire by tandem duplication in mouse Protocadherin-α cluster
    • Kaneko, R., Abe, M., Hirabayashi, T., Uchimura, A., Sakimura, K., Yanagawa, Y., Yagi, T., Expansion of stochastic expression repertoire by tandem duplication in mouse Protocadherin-α cluster. Sci. Rep., 4, 2014, 6263.
    • (2014) Sci. Rep. , vol.4 , pp. 6263
    • Kaneko, R.1    Abe, M.2    Hirabayashi, T.3    Uchimura, A.4    Sakimura, K.5    Yanagawa, Y.6    Yagi, T.7
  • 30
    • 45549101475 scopus 로고    scopus 로고
    • Relationship between DNA methylation states and transcription of individual isoforms encoded by the protocadherin-?? gene cluster
    • Kawaguchi, M., Toyama, T., Kaneko, R., Hirayama, T., Kawamura, Y., Yagi, T., Relationship between DNA methylation states and transcription of individual isoforms encoded by the protocadherin-?? gene cluster. J. Biol. Chem. 283 (2008), 12064–12075.
    • (2008) J. Biol. Chem. , vol.283 , pp. 12064-12075
    • Kawaguchi, M.1    Toyama, T.2    Kaneko, R.3    Hirayama, T.4    Kawamura, Y.5    Yagi, T.6
  • 31
    • 13444270332 scopus 로고    scopus 로고
    • CpG island methylator phenotype is a strong determinant of poor prognosis in neuroblastomas
    • Abe, M., Ohira, M., Kaneda, A., Yagi, Y., Yamamoto, S., CpG island methylator phenotype is a strong determinant of poor prognosis in neuroblastomas. Cancer Res. 65 (2005), 828–834.
    • (2005) Cancer Res. , vol.65 , pp. 828-834
    • Abe, M.1    Ohira, M.2    Kaneda, A.3    Yagi, Y.4    Yamamoto, S.5
  • 35
  • 37
    • 84861917541 scopus 로고    scopus 로고
    • Role of CCCTC binding factor (CTCF) and cohesin in the generation of single-cell diversity of protocadherin-α gene expression
    • Monahan, K., Rudnick, N.D., Kehayova, P.D., Pauli, F., Newberry, K.M., Myers, R.M., Maniatis, T., Role of CCCTC binding factor (CTCF) and cohesin in the generation of single-cell diversity of protocadherin-α gene expression. Proc. Natl. Acad. Sci. U. S. A. 109 (2012), 9125–9130.
    • (2012) Proc. Natl. Acad. Sci. U. S. A. , vol.109 , pp. 9125-9130
    • Monahan, K.1    Rudnick, N.D.2    Kehayova, P.D.3    Pauli, F.4    Newberry, K.M.5    Myers, R.M.6    Maniatis, T.7
  • 38
    • 84865724573 scopus 로고    scopus 로고
    • CTCF is required for neural development and stochastic expression of clustered pcdh genes in neurons
    • Hirayama, T., Tarusawa, E., Yoshimura, Y., Galjart, N., Yagi, T., CTCF is required for neural development and stochastic expression of clustered pcdh genes in neurons. Cell Rep. 2 (2012), 345–357.
    • (2012) Cell Rep. , vol.2 , pp. 345-357
    • Hirayama, T.1    Tarusawa, E.2    Yoshimura, Y.3    Galjart, N.4    Yagi, T.5
  • 40
    • 80054737703 scopus 로고    scopus 로고
    • Regulatory elements required for the activation and repression of the protocadherin-α gene cluster
    • Kehayova, P., Monahan, K., Chen, W., Maniatis, T., Regulatory elements required for the activation and repression of the protocadherin-α gene cluster. Proc. Natl. Acad. Sci. U. S. A. 108 (2011), 17195–17200.
    • (2011) Proc. Natl. Acad. Sci. U. S. A. , vol.108 , pp. 17195-17200
    • Kehayova, P.1    Monahan, K.2    Chen, W.3    Maniatis, T.4
  • 42
    • 84901274317 scopus 로고    scopus 로고
    • Epigenetic characterization of the growth hormone gene identifies SmcHD1 as a regulator of autosomal gene clusters
    • Massah, S., Hollebakken, R., Labrecque, M., Kolybaba, A., Beischlag, T., Prefontaine, G., Epigenetic characterization of the growth hormone gene identifies SmcHD1 as a regulator of autosomal gene clusters. PLoS One, 9, 2014, e97535.
    • (2014) PLoS One , vol.9 , pp. e97535
    • Massah, S.1    Hollebakken, R.2    Labrecque, M.3    Kolybaba, A.4    Beischlag, T.5    Prefontaine, G.6
  • 43
    • 84881287607 scopus 로고    scopus 로고
    • Epigenetic functions of smchd1 repress gene clusters on the inactive X chromosome and on autosomes
    • Gendrel, A., Tang, Y.A., Suzuki, M., Godwin, J., Nesterova, T.B., Greally, J.M., Heard, E., Epigenetic functions of smchd1 repress gene clusters on the inactive X chromosome and on autosomes. Mol. Cell. Biol. 33 (2013), 3150–3165.
    • (2013) Mol. Cell. Biol. , vol.33 , pp. 3150-3165
    • Gendrel, A.1    Tang, Y.A.2    Suzuki, M.3    Godwin, J.4    Nesterova, T.B.5    Greally, J.M.6    Heard, E.7
  • 44
    • 49449111926 scopus 로고    scopus 로고
    • Mechanisms of imprinting of the Prader-Willi/Angelman region
    • Horsthemke, B., Wagstaff, J., Mechanisms of imprinting of the Prader-Willi/Angelman region. Am. J. Med. Genet. Part A 146 (2008), 2041–2052.
    • (2008) Am. J. Med. Genet. Part A , vol.146 , pp. 2041-2052
    • Horsthemke, B.1    Wagstaff, J.2
  • 46
    • 84921691854 scopus 로고    scopus 로고
    • Histone-fold domain protein NF-Y promotes chromatin accessibility for cell type-specific master transcription factors
    • Oldfield, A., Yang, P., Conway, A., Cinghu, S., Freudenberg, J., Yellaboina, S., Jothi, R., Histone-fold domain protein NF-Y promotes chromatin accessibility for cell type-specific master transcription factors. Mol. Cell 55 (2014), 708–722.
    • (2014) Mol. Cell , vol.55 , pp. 708-722
    • Oldfield, A.1    Yang, P.2    Conway, A.3    Cinghu, S.4    Freudenberg, J.5    Yellaboina, S.6    Jothi, R.7
  • 49
    • 56649123545 scopus 로고    scopus 로고
    • The Cohesin loading factor NIPBL recruits histone deacetylases to mediate local chromatin modifications
    • Jahnke, P., Xu, W., Wu, M., Albrecht, M., Gabriel, H., Gillessen-kaesbach, G., Kaiser, F.J., The Cohesin loading factor NIPBL recruits histone deacetylases to mediate local chromatin modifications. Nucl. Acid. Res. 36 (2008), 6450–6458.
    • (2008) Nucl. Acid. Res. , vol.36 , pp. 6450-6458
    • Jahnke, P.1    Xu, W.2    Wu, M.3    Albrecht, M.4    Gabriel, H.5    Gillessen-kaesbach, G.6    Kaiser, F.J.7
  • 56
    • 18044383304 scopus 로고    scopus 로고
    • Highly nonrandom features of synaptic connectivity in local cortical circuits
    • Song, S., Sjöström, P.J., Reigl, M., Nelson, S., Chklovskii, D.B., Highly nonrandom features of synaptic connectivity in local cortical circuits. PLoS Biol. 3 (2005), 0507–0519.
    • (2005) PLoS Biol. , vol.3 , pp. 0507-0519
    • Song, S.1    Sjöström, P.J.2    Reigl, M.3    Nelson, S.4    Chklovskii, D.B.5
  • 57
    • 85044162753 scopus 로고    scopus 로고
    • Specific synapses develop preferentially among sister excitatory neurons in the neocortex
    • Lefort, S., Tomm, C., Floyd Sarria, J.C., Petersen, C.C.H., Specific synapses develop preferentially among sister excitatory neurons in the neocortex. Nature 458 (2005), 237–245.
    • (2005) Nature , vol.458 , pp. 237-245
    • Lefort, S.1    Tomm, C.2    Floyd Sarria, J.C.3    Petersen, C.C.H.4
  • 58
    • 79955101961 scopus 로고    scopus 로고
    • A synaptic organizing principle for cortical neuronal groups
    • Perin, R., Berger, T.K., Markram, H., A synaptic organizing principle for cortical neuronal groups. Proc. Natl. Acad. Sci. U. S. A. 108 (2011), 5419–5424.
    • (2011) Proc. Natl. Acad. Sci. U. S. A. , vol.108 , pp. 5419-5424
    • Perin, R.1    Berger, T.K.2    Markram, H.3
  • 59
    • 62849088490 scopus 로고    scopus 로고
    • Specific synapses develop preferentially among sister excitatory neurons in the neocortex
    • Yu, Y.-C., Bultje, R.S., Wang, X., Shi, S.-H., Specific synapses develop preferentially among sister excitatory neurons in the neocortex. Nature 458 (2009), 501–504.
    • (2009) Nature , vol.458 , pp. 501-504
    • Yu, Y.-C.1    Bultje, R.S.2    Wang, X.3    Shi, S.-H.4
  • 60
    • 0038790311 scopus 로고    scopus 로고
    • Gamma-protocadherins are targeted to subsets of synapses and intracellular organelles in neurons
    • Phillips, G.R., Tanaka, H., Frank, M., Elste, A., Fidler, L., Benson, D.L., Colman, D.R., Gamma-protocadherins are targeted to subsets of synapses and intracellular organelles in neurons. J. Neurosci. 23 (2003), 5096–5104.
    • (2003) J. Neurosci. , vol.23 , pp. 5096-5104
    • Phillips, G.R.1    Tanaka, H.2    Frank, M.3    Elste, A.4    Fidler, L.5    Benson, D.L.6    Colman, D.R.7
  • 61
    • 60149106363 scopus 로고    scopus 로고
    • Gamma-protocadherin homophilic interaction and intracellular trafficking is controlled by the cytoplasmic domain in neurons
    • Fernández-Monreal, M., Kang, S., Phillips, G.R., Gamma-protocadherin homophilic interaction and intracellular trafficking is controlled by the cytoplasmic domain in neurons. Mol. Cell. Neurosci. 40 (2009), 344–353.
    • (2009) Mol. Cell. Neurosci. , vol.40 , pp. 344-353
    • Fernández-Monreal, M.1    Kang, S.2    Phillips, G.R.3
  • 62
    • 84871364639 scopus 로고    scopus 로고
    • Protocadherin clusters and cell adhesion kinase regulate dendrite complexity through Rho GTPase
    • Suo, L., Lu, H., Ying, G., Capecchi, M.R., Wu, Q., Protocadherin clusters and cell adhesion kinase regulate dendrite complexity through Rho GTPase. J. Mol. Cell Biol. 4 (2012), 362–376.
    • (2012) J. Mol. Cell Biol. , vol.4 , pp. 362-376
    • Suo, L.1    Lu, H.2    Ying, G.3    Capecchi, M.R.4    Wu, Q.5
  • 64
    • 84943621675 scopus 로고    scopus 로고
    • The transfer and transformation of collective network information in gene-matched networks
    • Kitsukawa, T., Yagi, T., The transfer and transformation of collective network information in gene-matched networks. Sci. Rep., 5, 2015, 14984.
    • (2015) Sci. Rep. , vol.5 , pp. 14984
    • Kitsukawa, T.1    Yagi, T.2
  • 66
    • 84940563410 scopus 로고    scopus 로고
    • Protocadherin-dependent dendritic self- avoidance regulates neural connectivity and circuit function
    • Kostadinov, D., Sanes, J.R., Protocadherin-dependent dendritic self- avoidance regulates neural connectivity and circuit function. eLife 6 (2015), 1–23.
    • (2015) eLife , vol.6 , pp. 1-23
    • Kostadinov, D.1    Sanes, J.R.2
  • 67
    • 84867172507 scopus 로고    scopus 로고
    • Constitutively expressed Protocadherin-α regulates the coalescence and elimination of homotypic olfactory axons through its cytoplasmic region
    • Hasegawa, S., Hirabayashi, T., Kondo, T., Inoue, K., Esumi, S., Okayama, A., Hamada, S., Yagi, T., Constitutively expressed Protocadherin-α regulates the coalescence and elimination of homotypic olfactory axons through its cytoplasmic region. Front. Mol. Neurosci., 5, 2012, 97.
    • (2012) Front. Mol. Neurosci. , vol.5 , pp. 97
    • Hasegawa, S.1    Hirabayashi, T.2    Kondo, T.3    Inoue, K.4    Esumi, S.5    Okayama, A.6    Hamada, S.7    Yagi, T.8


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