메뉴 건너뛰기




Volumn 55, Issue 5, 2014, Pages 708-722

Histone-Fold Domain Protein NF-Y Promotes Chromatin Accessibility for Cell Type-Specific Master Transcription Factors

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE; NUCLEAR FACTOR Y; NUCLEAR FACTOR YA; NUCLEAR FACTOR YB; NUCLEAR FACTOR YC; UNCLASSIFIED DRUG; CCAAT BINDING FACTOR; CHROMATIN; NUCLEOSOME; TRANSCRIPTION FACTOR;

EID: 84921691854     PISSN: 10972765     EISSN: 10974164     Source Type: Journal    
DOI: 10.1016/j.molcel.2014.07.005     Document Type: Article
Times cited : (142)

References (50)
  • 1
    • 80052239700 scopus 로고    scopus 로고
    • Specific inhibition of NF-Y subunits triggers different cell proliferation defects
    • Benatti P., Dolfini D., Viganò A., Ravo M., Weisz A., Imbriano C. Specific inhibition of NF-Y subunits triggers different cell proliferation defects. Nucleic Acids Res. 2011, 39:5356-5368.
    • (2011) Nucleic Acids Res. , vol.39 , pp. 5356-5368
    • Benatti, P.1    Dolfini, D.2    Viganò, A.3    Ravo, M.4    Weisz, A.5    Imbriano, C.6
  • 2
    • 0346365375 scopus 로고    scopus 로고
    • The B subunit of the CCAAT box binding transcription factor complex (CBF/NF-Y) is essential for early mouse development and cell proliferation
    • Bhattacharya A., Deng J.M., Zhang Z., Behringer R., de Crombrugghe B., Maity S.N. The B subunit of the CCAAT box binding transcription factor complex (CBF/NF-Y) is essential for early mouse development and cell proliferation. Cancer Res. 2003, 63:8167-8172.
    • (2003) Cancer Res. , vol.63 , pp. 8167-8172
    • Bhattacharya, A.1    Deng, J.M.2    Zhang, Z.3    Behringer, R.4    de Crombrugghe, B.5    Maity, S.N.6
  • 3
    • 84856877564 scopus 로고    scopus 로고
    • NF-Y is necessary for hematopoietic stem cell proliferation and survival
    • Bungartz G., Land H., Scadden D.T., Emerson S.G. NF-Y is necessary for hematopoietic stem cell proliferation and survival. Blood 2012, 119:1380-1389.
    • (2012) Blood , vol.119 , pp. 1380-1389
    • Bungartz, G.1    Land, H.2    Scadden, D.T.3    Emerson, S.G.4
  • 4
    • 0020575746 scopus 로고
    • Temporal order of chromatin structural changes associated with activation of the major chicken vitellogenin gene
    • Burch J.B., Weintraub H. Temporal order of chromatin structural changes associated with activation of the major chicken vitellogenin gene. Cell 1983, 33:65-76.
    • (1983) Cell , vol.33 , pp. 65-76
    • Burch, J.B.1    Weintraub, H.2
  • 5
    • 44649117905 scopus 로고    scopus 로고
    • Integration of external signaling pathways with the core transcriptional network in embryonic stem cells
    • Chen X., Xu H., Yuan P., Fang F., Huss M., Vega V.B., Wong E., Orlov Y.L., Zhang W., Jiang J., et al. Integration of external signaling pathways with the core transcriptional network in embryonic stem cells. Cell 2008, 133:1106-1117.
    • (2008) Cell , vol.133 , pp. 1106-1117
    • Chen, X.1    Xu, H.2    Yuan, P.3    Fang, F.4    Huss, M.5    Vega, V.B.6    Wong, E.7    Orlov, Y.L.8    Zhang, W.9    Jiang, J.10
  • 9
    • 0035798572 scopus 로고    scopus 로고
    • CBF/NF-Y functions both in nucleosomal disruption and transcription activation of the chromatin-assembled topoisomerase IIalpha promoter. Transcription activation by CBF/NF-Y in chromatin is dependent on the promoter structure
    • Coustry F., Hu Q., de Crombrugghe B., Maity S.N. CBF/NF-Y functions both in nucleosomal disruption and transcription activation of the chromatin-assembled topoisomerase IIalpha promoter. Transcription activation by CBF/NF-Y in chromatin is dependent on the promoter structure. J. Biol. Chem. 2001, 276:40621-40630.
    • (2001) J. Biol. Chem. , vol.276 , pp. 40621-40630
    • Coustry, F.1    Hu, Q.2    de Crombrugghe, B.3    Maity, S.N.4
  • 12
    • 84867912887 scopus 로고    scopus 로고
    • The short isoform of NF-YA belongs to the embryonic stem cell transcription factor circuitry
    • Dolfini D., Minuzzo M., Pavesi G., Mantovani R. The short isoform of NF-YA belongs to the embryonic stem cell transcription factor circuitry. Stem Cells 2012, 30:2450-2459.
    • (2012) Stem Cells , vol.30 , pp. 2450-2459
    • Dolfini, D.1    Minuzzo, M.2    Pavesi, G.3    Mantovani, R.4
  • 13
    • 84857707318 scopus 로고    scopus 로고
    • ChromHMM: automating chromatin-state discovery and characterization
    • Ernst J., Kellis M. ChromHMM: automating chromatin-state discovery and characterization. Nat. Methods 2012, 9:215-216.
    • (2012) Nat. Methods , vol.9 , pp. 215-216
    • Ernst, J.1    Kellis, M.2
  • 14
    • 0033529095 scopus 로고    scopus 로고
    • Down-regulation of cyclin B1 gene transcription in terminally differentiated skeletal muscle cells is associated with loss of functional CCAAT-binding NF-Y complex
    • Farina A., Manni I., Fontemaggi G., Tiainen M., Cenciarelli C., Bellorini M., Mantovani R., Sacchi A., Piaggio G. Down-regulation of cyclin B1 gene transcription in terminally differentiated skeletal muscle cells is associated with loss of functional CCAAT-binding NF-Y complex. Oncogene 1999, 18:2818-2827.
    • (1999) Oncogene , vol.18 , pp. 2818-2827
    • Farina, A.1    Manni, I.2    Fontemaggi, G.3    Tiainen, M.4    Cenciarelli, C.5    Bellorini, M.6    Mantovani, R.7    Sacchi, A.8    Piaggio, G.9
  • 15
    • 84881168849 scopus 로고    scopus 로고
    • NF-Y coassociates with FOS at promoters, enhancers, repetitive elements, and inactive chromatin regions, and is stereo-positioned with growth-controlling transcription factors
    • Fleming J.D., Pavesi G., Benatti P., Imbriano C., Mantovani R., Struhl K. NF-Y coassociates with FOS at promoters, enhancers, repetitive elements, and inactive chromatin regions, and is stereo-positioned with growth-controlling transcription factors. Genome Res. 2013, 23:1195-1209.
    • (2013) Genome Res. , vol.23 , pp. 1195-1209
    • Fleming, J.D.1    Pavesi, G.2    Benatti, P.3    Imbriano, C.4    Mantovani, R.5    Struhl, K.6
  • 16
    • 84860378636 scopus 로고    scopus 로고
    • Acute depletion of Tet1-dependent 5-hydroxymethylcytosine levels impairs LIF/Stat3 signaling and results in loss of embryonic stem cell identity
    • Freudenberg J.M., Ghosh S., Lackford B.L., Yellaboina S., Zheng X., Li R., Cuddapah S., Wade P.A., Hu G., Jothi R. Acute depletion of Tet1-dependent 5-hydroxymethylcytosine levels impairs LIF/Stat3 signaling and results in loss of embryonic stem cell identity. Nucleic Acids Res. 2012, 40:3364-3377.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 3364-3377
    • Freudenberg, J.M.1    Ghosh, S.2    Lackford, B.L.3    Yellaboina, S.4    Zheng, X.5    Li, R.6    Cuddapah, S.7    Wade, P.A.8    Hu, G.9    Jothi, R.10
  • 18
    • 34548411011 scopus 로고    scopus 로고
    • Systematic identification of cis-regulatory sequences active in mouse and human embryonic stem cells
    • Grskovic M., Chaivorapol C., Gaspar-Maia A., Li H., Ramalho-Santos M. Systematic identification of cis-regulatory sequences active in mouse and human embryonic stem cells. PLoS Genet. 2007, 3:e145.
    • (2007) PLoS Genet. , vol.3 , pp. e145
    • Grskovic, M.1    Chaivorapol, C.2    Gaspar-Maia, A.3    Li, H.4    Ramalho-Santos, M.5
  • 19
    • 84865724573 scopus 로고    scopus 로고
    • CTCF is required for neural development and stochastic expression of clustered Pcdh genes in neurons
    • Hirayama T., Tarusawa E., Yoshimura Y., Galjart N., Yagi T. CTCF is required for neural development and stochastic expression of clustered Pcdh genes in neurons. Cell Rep. 2012, 2:345-357.
    • (2012) Cell Rep. , vol.2 , pp. 345-357
    • Hirayama, T.1    Tarusawa, E.2    Yoshimura, Y.3    Galjart, N.4    Yagi, T.5
  • 20
    • 79961002967 scopus 로고    scopus 로고
    • EsBAF facilitates pluripotency by conditioning the genome for LIF/STAT3 signalling and by regulating polycomb function
    • Ho L., Miller E.L., Ronan J.L., Ho W.Q., Jothi R., Crabtree G.R. esBAF facilitates pluripotency by conditioning the genome for LIF/STAT3 signalling and by regulating polycomb function. Nat. Cell Biol. 2011, 13:903-913.
    • (2011) Nat. Cell Biol. , vol.13 , pp. 903-913
    • Ho, L.1    Miller, E.L.2    Ronan, J.L.3    Ho, W.Q.4    Jothi, R.5    Crabtree, G.R.6
  • 21
    • 0034635487 scopus 로고    scopus 로고
    • Stable expression of a dominant negative mutant of CCAAT binding factor/NF-Y in mouse fibroblast cells resulting in retardation of cell growth and inhibition of transcription of various cellular genes
    • Hu Q., Maity S.N. Stable expression of a dominant negative mutant of CCAAT binding factor/NF-Y in mouse fibroblast cells resulting in retardation of cell growth and inhibition of transcription of various cellular genes. J. Biol. Chem. 2000, 275:4435-4444.
    • (2000) J. Biol. Chem. , vol.275 , pp. 4435-4444
    • Hu, Q.1    Maity, S.N.2
  • 22
    • 52649132425 scopus 로고    scopus 로고
    • Genome-wide identification of invivo protein-DNA binding sites from ChIP-Seq data
    • Jothi R., Cuddapah S., Barski A., Cui K., Zhao K. Genome-wide identification of invivo protein-DNA binding sites from ChIP-Seq data. Nucleic Acids Res. 2008, 36:5221-5231.
    • (2008) Nucleic Acids Res. , vol.36 , pp. 5221-5231
    • Jothi, R.1    Cuddapah, S.2    Barski, A.3    Cui, K.4    Zhao, K.5
  • 23
    • 11144335986 scopus 로고    scopus 로고
    • NF-Y is essential for the recruitment of RNA polymerase II and inducible transcription of several CCAAT box-containing genes
    • Kabe Y., Yamada J., Uga H., Yamaguchi Y., Wada T., Handa H. NF-Y is essential for the recruitment of RNA polymerase II and inducible transcription of several CCAAT box-containing genes. Mol. Cell. Biol. 2005, 25:512-522.
    • (2005) Mol. Cell. Biol. , vol.25 , pp. 512-522
    • Kabe, Y.1    Yamada, J.2    Uga, H.3    Yamaguchi, Y.4    Wada, T.5    Handa, H.6
  • 25
    • 77957757417 scopus 로고    scopus 로고
    • A Myc network accounts for similarities between embryonic stem and cancer cell transcription programs
    • Kim J., Woo A.J., Chu J., Snow J.W., Fujiwara Y., Kim C.G., Cantor A.B., Orkin S.H. A Myc network accounts for similarities between embryonic stem and cancer cell transcription programs. Cell 2010, 143:313-324.
    • (2010) Cell , vol.143 , pp. 313-324
    • Kim, J.1    Woo, A.J.2    Chu, J.3    Snow, J.W.4    Fujiwara, Y.5    Kim, C.G.6    Cantor, A.B.7    Orkin, S.H.8
  • 27
    • 0842267182 scopus 로고    scopus 로고
    • The histone-fold protein complex CHRAC-15/17 enhances nucleosome sliding and assembly mediated by ACF
    • Kukimoto I., Elderkin S., Grimaldi M., Oelgeschläger T., Varga-Weisz P.D. The histone-fold protein complex CHRAC-15/17 enhances nucleosome sliding and assembly mediated by ACF. Mol. Cell 2004, 13:265-277.
    • (2004) Mol. Cell , vol.13 , pp. 265-277
    • Kukimoto, I.1    Elderkin, S.2    Grimaldi, M.3    Oelgeschläger, T.4    Varga-Weisz, P.D.5
  • 28
    • 34547115028 scopus 로고    scopus 로고
    • A dominant-negative form of mouse SOX2 induces trophectoderm differentiation and progressive polyploidy in mouse embryonic stem cells
    • Li J., Pan G., Cui K., Liu Y., Xu S., Pei D. A dominant-negative form of mouse SOX2 induces trophectoderm differentiation and progressive polyploidy in mouse embryonic stem cells. J. Biol. Chem. 2007, 282:19481-19492.
    • (2007) J. Biol. Chem. , vol.282 , pp. 19481-19492
    • Li, J.1    Pan, G.2    Cui, K.3    Liu, Y.4    Xu, S.5    Pei, D.6
  • 29
    • 84859753133 scopus 로고    scopus 로고
    • Inactivation of CBF/NF-Y in postnatal liver causes hepatocellular degeneration, lipid deposition, and endoplasmic reticulum stress
    • Luo R., Klumpp S.A., Finegold M.J., Maity S.N. Inactivation of CBF/NF-Y in postnatal liver causes hepatocellular degeneration, lipid deposition, and endoplasmic reticulum stress. Sci. Rep. 2011, 1:136.
    • (2011) Sci. Rep. , vol.1 , pp. 136
    • Luo, R.1    Klumpp, S.A.2    Finegold, M.J.3    Maity, S.N.4
  • 30
    • 79551624666 scopus 로고    scopus 로고
    • Sequence-specific regulator Prdm14 safeguards mouse ESCs from entering extraembryonic endoderm fates
    • Ma Z., Swigut T., Valouev A., Rada-Iglesias A., Wysocka J. Sequence-specific regulator Prdm14 safeguards mouse ESCs from entering extraembryonic endoderm fates. Nat. Struct. Mol. Biol. 2011, 18:120-127.
    • (2011) Nat. Struct. Mol. Biol. , vol.18 , pp. 120-127
    • Ma, Z.1    Swigut, T.2    Valouev, A.3    Rada-Iglesias, A.4    Wysocka, J.5
  • 31
    • 0032078929 scopus 로고    scopus 로고
    • Role of the CCAAT-binding protein CBF/NF-Y in transcription
    • Maity S.N., de Crombrugghe B. Role of the CCAAT-binding protein CBF/NF-Y in transcription. Trends Biochem. Sci. 1998, 23:174-178.
    • (1998) Trends Biochem. Sci. , vol.23 , pp. 174-178
    • Maity, S.N.1    de Crombrugghe, B.2
  • 34
    • 84555190005 scopus 로고    scopus 로고
    • ChIP-Seq data analysis: identification of protein-DNA binding sites with SISSRs peak-finder
    • Narlikar L., Jothi R. ChIP-Seq data analysis: identification of protein-DNA binding sites with SISSRs peak-finder. Methods Mol. Biol. 2012, 802:305-322.
    • (2012) Methods Mol. Biol. , vol.802 , pp. 305-322
    • Narlikar, L.1    Jothi, R.2
  • 37
    • 84867894231 scopus 로고    scopus 로고
    • Master regulators or lineage-specifying? Changing views on CD4+ Tcell transcription factors
    • Oestreich K.J., Weinmann A.S. Master regulators or lineage-specifying? Changing views on CD4+ Tcell transcription factors. Nat. Rev. Immunol. 2012, 12:799-804.
    • (2012) Nat. Rev. Immunol. , vol.12 , pp. 799-804
    • Oestreich, K.J.1    Weinmann, A.S.2
  • 39
    • 0037428397 scopus 로고    scopus 로고
    • The NF-YB/NF-YC structure gives insight into DNA binding and transcription regulation by CCAAT factor NF-Y
    • Romier C., Cocchiarella F., Mantovani R., Moras D. The NF-YB/NF-YC structure gives insight into DNA binding and transcription regulation by CCAAT factor NF-Y. J. Biol. Chem. 2003, 278:1336-1345.
    • (2003) J. Biol. Chem. , vol.278 , pp. 1336-1345
    • Romier, C.1    Cocchiarella, F.2    Mantovani, R.3    Moras, D.4
  • 40
    • 0028920041 scopus 로고
    • Recombinant rat CBF-C, the third subunit of CBF/NFY, allows formation of a protein-DNA complex with CBF-A and CBF-B and with yeast HAP2 and HAP3
    • Sinha S., Maity S.N., Lu J., de Crombrugghe B. Recombinant rat CBF-C, the third subunit of CBF/NFY, allows formation of a protein-DNA complex with CBF-A and CBF-B and with yeast HAP2 and HAP3. Proc. Natl. Acad. Sci. USA 1995, 92:1624-1628.
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 1624-1628
    • Sinha, S.1    Maity, S.N.2    Lu, J.3    de Crombrugghe, B.4
  • 41
    • 84870058502 scopus 로고    scopus 로고
    • Facilitators and impediments of the pluripotency reprogramming factors' initial engagement with the genome
    • Soufi A., Donahue G., Zaret K.S. Facilitators and impediments of the pluripotency reprogramming factors' initial engagement with the genome. Cell 2012, 151:994-1004.
    • (2012) Cell , vol.151 , pp. 994-1004
    • Soufi, A.1    Donahue, G.2    Zaret, K.S.3
  • 44
    • 17144395919 scopus 로고    scopus 로고
    • Chromatin immunoprecipitation (ChIP) on chip experiments uncover a widespread distribution of NF-Y binding CCAAT sites outside of core promoters
    • Testa A., Donati G., Yan P., Romani F., Huang T.H., Viganò M.A., Mantovani R. Chromatin immunoprecipitation (ChIP) on chip experiments uncover a widespread distribution of NF-Y binding CCAAT sites outside of core promoters. J. Biol. Chem. 2005, 280:13606-13615.
    • (2005) J. Biol. Chem. , vol.280 , pp. 13606-13615
    • Testa, A.1    Donati, G.2    Yan, P.3    Romani, F.4    Huang, T.H.5    Viganò, M.A.6    Mantovani, R.7
  • 46
    • 84899742411 scopus 로고    scopus 로고
    • INO80 facilitates pluripotency gene activation in embryonic stem cell self-renewal, reprogramming, and blastocyst development
    • Wang L., Du Y., Ward J.M., Shimbo T., Lackford B., Zheng X., Miao Y.L., Zhou B., Han L., Fargo D.C., et al. INO80 facilitates pluripotency gene activation in embryonic stem cell self-renewal, reprogramming, and blastocyst development. Cell Stem Cell 2014, 14:575-591.
    • (2014) Cell Stem Cell , vol.14 , pp. 575-591
    • Wang, L.1    Du, Y.2    Ward, J.M.3    Shimbo, T.4    Lackford, B.5    Zheng, X.6    Miao, Y.L.7    Zhou, B.8    Han, L.9    Fargo, D.C.10
  • 48
    • 30444443747 scopus 로고    scopus 로고
    • High-throughput screen for genes predominantly expressed in the ICM of mouse blastocysts by whole mount insitu hybridization
    • Yoshikawa T., Piao Y., Zhong J., Matoba R., Carter M.G., Wang Y., Goldberg I., Ko M.S. High-throughput screen for genes predominantly expressed in the ICM of mouse blastocysts by whole mount insitu hybridization. Gene Expr. Patterns 2006, 6:213-224.
    • (2006) Gene Expr. Patterns , vol.6 , pp. 213-224
    • Yoshikawa, T.1    Piao, Y.2    Zhong, J.3    Matoba, R.4    Carter, M.G.5    Wang, Y.6    Goldberg, I.7    Ko, M.S.8
  • 49
    • 80455144479 scopus 로고    scopus 로고
    • Pioneer transcription factors: establishing competence for gene expression
    • Zaret K.S., Carroll J.S. Pioneer transcription factors: establishing competence for gene expression. Genes Dev. 2011, 25:2227-2241.
    • (2011) Genes Dev. , vol.25 , pp. 2227-2241
    • Zaret, K.S.1    Carroll, J.S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.