메뉴 건너뛰기




Volumn 17, Issue 6, 2017, Pages 1308-1317

A comparison of individual-based genetic distance metrics for landscape genetics

Author keywords

genetic distance; isolation by distance; isolation by resistance; landscape genetics; model selection; principal components analysis

Indexed keywords

BIOLOGICAL MODEL; BIOLOGY; BIOSTATISTICS; COMPARATIVE STUDY; COMPUTER SIMULATION; EVALUATION STUDY; GENETIC VARIATION; POPULATION GENETICS; PROCEDURES;

EID: 85020219807     PISSN: 1755098X     EISSN: 17550998     Source Type: Journal    
DOI: 10.1111/1755-0998.12684     Document Type: Article
Times cited : (111)

References (52)
  • 3
    • 61849146960 scopus 로고    scopus 로고
    • Statistical approaches in landscape genetics: An evaluation of methods for linking landscape and genetic data
    • Balkenhol, N., Waits, L. P., & Dezzani, R. J. (2009). Statistical approaches in landscape genetics: An evaluation of methods for linking landscape and genetic data. Ecography, 32, 818–830.
    • (2009) Ecography , vol.32 , pp. 818-830
    • Balkenhol, N.1    Waits, L.P.2    Dezzani, R.J.3
  • 4
    • 85034397682 scopus 로고    scopus 로고
    • Best management practices for wildlife corridors
    • Beier, P., Majka, D., Newell, S., & Garding, E. (2008). Best management practices for wildlife corridors. America, 178, 1–14.
    • (2008) America , vol.178 , pp. 1-14
    • Beier, P.1    Majka, D.2    Newell, S.3    Garding, E.4
  • 6
    • 0000286531 scopus 로고
    • An ordination of the upland forest communities of southern Wisconsin
    • Bray, J. R., & Curtis, J. T. (1957). An ordination of the upland forest communities of southern Wisconsin. Ecological Monographs, 27, 325.
    • (1957) Ecological Monographs , vol.27 , pp. 325
    • Bray, J.R.1    Curtis, J.T.2
  • 7
    • 84893407589 scopus 로고    scopus 로고
    • Landscape effects on gene flow for a climate-sensitive montane species, the American pika
    • Castillo, J. A., Epps, C. W., Davis, A. R., & Cushman, S. A. (2014). Landscape effects on gene flow for a climate-sensitive montane species, the American pika. Molecular Ecology, 23, 843–856.
    • (2014) Molecular Ecology , vol.23 , pp. 843-856
    • Castillo, J.A.1    Epps, C.W.2    Davis, A.R.3    Cushman, S.A.4
  • 9
    • 84877097736 scopus 로고    scopus 로고
    • Re-evaluating causal modeling with mantel tests in landscape genetics
    • Cushman, S. A., Wasserman, T. N., Landguth, E. L., & Shirk, A. J. (2013). Re-evaluating causal modeling with mantel tests in landscape genetics. Diversity, 5, 51–72.
    • (2013) Diversity , vol.5 , pp. 51-72
    • Cushman, S.A.1    Wasserman, T.N.2    Landguth, E.L.3    Shirk, A.J.4
  • 12
    • 37649025929 scopus 로고    scopus 로고
    • The ecodist package for dissimilarity-based analysis of ecological data
    • Goslee, S. C., & Urban, D. L. (2007). The ecodist package for dissimilarity-based analysis of ecological data. Journal of Statistical Software, 22, 1–19.
    • (2007) Journal of Statistical Software , vol.22 , pp. 1-19
    • Goslee, S.C.1    Urban, D.L.2
  • 13
    • 84880825461 scopus 로고    scopus 로고
    • Current approaches using genetic distances produce poor estimates of landscape resistance to interindividual dispersal
    • Graves, T. A., Beier, P., & Royle, J. A. (2013). Current approaches using genetic distances produce poor estimates of landscape resistance to interindividual dispersal. Molecular Ecology, 22, 3888–3903.
    • (2013) Molecular Ecology , vol.22 , pp. 3888-3903
    • Graves, T.A.1    Beier, P.2    Royle, J.A.3
  • 14
    • 37349112220 scopus 로고    scopus 로고
    • Conserving the evolutionary potential of California valley oak (Quercus lobata N,e): A multivariate genetic approach to conservation planning
    • Grivet, D., Sork, V. L., Westfall, R. D., & Davis, F. W. (2008). Conserving the evolutionary potential of California valley oak (Quercus lobata N,e): A multivariate genetic approach to conservation planning. Molecular Ecology, 17, 139–156.
    • (2008) Molecular Ecology , vol.17 , pp. 139-156
    • Grivet, D.1    Sork, V.L.2    Westfall, R.D.3    Davis, F.W.4
  • 15
    • 0036899010 scopus 로고    scopus 로고
    • spagedi: A versatile computer program to analyse spatial genetic structure at the individual or population levels
    • Hardy, O. J., & Vekemans, X. (2002). spagedi: A versatile computer program to analyse spatial genetic structure at the individual or population levels. Molecular Ecology Notes, 2, 618–620.
    • (2002) Molecular Ecology Notes , vol.2 , pp. 618-620
    • Hardy, O.J.1    Vekemans, X.2
  • 16
    • 0027332773 scopus 로고
    • Stopping rules in principal component analysis: A comparison of heuristical and statistical approaches
    • Jackson, D. A. (1993). Stopping rules in principal component analysis: A comparison of heuristical and statistical approaches. Ecology, 74, 2204–2214.
    • (1993) Ecology , vol.74 , pp. 2204-2214
    • Jackson, D.A.1
  • 17
    • 44349095887 scopus 로고    scopus 로고
    • adegenet: A r package for the multivariate analysis of genetic markers
    • Jombart, T. (2008). adegenet: A r package for the multivariate analysis of genetic markers. Bioinformatics, 24, 1403–1405.
    • (2008) Bioinformatics , vol.24 , pp. 1403-1405
    • Jombart, T.1
  • 18
    • 84926517381 scopus 로고    scopus 로고
    • Performance of partial statistics in individual-based landscape genetics
    • Kierepka, E. M., & Latch, E. K. (2015). Performance of partial statistics in individual-based landscape genetics. Molecular Ecology Resources, 15, 512–525.
    • (2015) Molecular Ecology Resources , vol.15 , pp. 512-525
    • Kierepka, E.M.1    Latch, E.K.2
  • 19
    • 73349087810 scopus 로고    scopus 로고
    • cdpop: A spatially explicit cost distance population genetics program
    • Landguth, E. L., & Cushman, S. A. (2010). cdpop: A spatially explicit cost distance population genetics program. Molecular Ecology Resources, 10, 156–161.
    • (2010) Molecular Ecology Resources , vol.10 , pp. 156-161
    • Landguth, E.L.1    Cushman, S.A.2
  • 20
    • 77955728073 scopus 로고    scopus 로고
    • Relationships between migration rates and landscape resistance assessed using individual-based simulations
    • Landguth, E. L., Cushman, S. A., Murphy, M. A., & Luikart, G. (2010). Relationships between migration rates and landscape resistance assessed using individual-based simulations. Molecular Ecology Resources, 10, 854–862.
    • (2010) Molecular Ecology Resources , vol.10 , pp. 854-862
    • Landguth, E.L.1    Cushman, S.A.2    Murphy, M.A.3    Luikart, G.4
  • 22
    • 84952838213 scopus 로고    scopus 로고
    • piecewisesem: Piecewise structural equation modelling in R for ecology, evolution, and systematics
    • Lefcheck, J. S. (2016). piecewisesem: Piecewise structural equation modelling in R for ecology, evolution, and systematics. Methods in Ecology and Evolution, 7, 573–579.
    • (2016) Methods in Ecology and Evolution , vol.7 , pp. 573-579
    • Lefcheck, J.S.1
  • 23
    • 0027408678 scopus 로고
    • Similarity of DNA fingerprints due to chance and relatedness
    • Li, C. C., Weeks, D. E., & Chakravarti, A. (1993). Similarity of DNA fingerprints due to chance and relatedness. Human Heredity, 43, 45–52.
    • (1993) Human Heredity , vol.43 , pp. 45-52
    • Li, C.C.1    Weeks, D.E.2    Chakravarti, A.3
  • 24
    • 0029188083 scopus 로고
    • Spatial genetic structure of a tropical understory shrub, Psychotria officinalis (Rubiaceae)
    • Loiselle, B. A., Sork, V. L., Nason, J., & Graham, C. (1995). Spatial genetic structure of a tropical understory shrub, Psychotria officinalis (Rubiaceae). American Journal of Botany, 82, 1420–1425.
    • (1995) American Journal of Botany , vol.82 , pp. 1420-1425
    • Loiselle, B.A.1    Sork, V.L.2    Nason, J.3    Graham, C.4
  • 25
    • 0345718511 scopus 로고    scopus 로고
    • Estimation of pairwise relatedness with molecular markers
    • Lynch, M., & Ritland, K. (1999). Estimation of pairwise relatedness with molecular markers. Genetics, 152, 1753–1766.
    • (1999) Genetics , vol.152 , pp. 1753-1766
    • Lynch, M.1    Ritland, K.2
  • 28
    • 0014054519 scopus 로고
    • The detection of disease clustering and a generalized regression approach
    • Mantel, N. (1967). The detection of disease clustering and a generalized regression approach. Cancer Research, 27, 209–220.
    • (1967) Cancer Research , vol.27 , pp. 209-220
    • Mantel, N.1
  • 30
    • 33750584310 scopus 로고    scopus 로고
    • Isolation by resistance
    • McRae, B. H. (2006). Isolation by resistance. Evolution, 60, 1551–1561.
    • (2006) Evolution , vol.60 , pp. 1551-1561
    • McRae, B.H.1
  • 31
    • 9644255667 scopus 로고    scopus 로고
    • Impacts of gene flow and logging history on the local genetic structure of a scattered tree species, Sorbus torminalis L. Crantz
    • Oddou-Muratorio, S., Demesure-Musch, B., Pélissier, R., & Gouyon, P. H. (2004). Impacts of gene flow and logging history on the local genetic structure of a scattered tree species, Sorbus torminalis L. Crantz. Molecular Ecology, 13, 3689–3702.
    • (2004) Molecular Ecology , vol.13 , pp. 3689-3702
    • Oddou-Muratorio, S.1    Demesure-Musch, B.2    Pélissier, R.3    Gouyon, P.H.4
  • 32
    • 33846006923 scopus 로고    scopus 로고
    • Population structure and eigenanalysis
    • Patterson, N., Price, A. L., & Reich, D. (2006). Population structure and eigenanalysis. PLoS Genetics, 2, 2074–2093.
    • (2006) PLoS Genetics , vol.2 , pp. 2074-2093
    • Patterson, N.1    Price, A.L.2    Reich, D.3
  • 33
    • 19044395321 scopus 로고    scopus 로고
    • How many principal components? Stopping rules for determining the number of non-trivial axes revisited
    • Peres-Neto, P. R., Jackson, D. A., & Somers, K. M. (2005). How many principal components? Stopping rules for determining the number of non-trivial axes revisited. Computational Statistics and Data Analysis, 49, 974–997.
    • (2005) Computational Statistics and Data Analysis , vol.49 , pp. 974-997
    • Peres-Neto, P.R.1    Jackson, D.A.2    Somers, K.M.3
  • 34
    • 84900798723 scopus 로고    scopus 로고
    • Ecological resistance surfaces predict fine-scale genetic differentiation in a terrestrial woodland salamander
    • Peterman, W. E., Connette, G. M., Semlitsch, R. D., & Eggert, L. S. (2014). Ecological resistance surfaces predict fine-scale genetic differentiation in a terrestrial woodland salamander. Molecular Ecology, 23, 2402–2413.
    • (2014) Molecular Ecology , vol.23 , pp. 2402-2413
    • Peterman, W.E.1    Connette, G.M.2    Semlitsch, R.D.3    Eggert, L.S.4
  • 35
    • 0000767877 scopus 로고
    • Estimating relatedness using genetic markers
    • Queller, D. C., & Goodnight, K. F. (1989). Estimating relatedness using genetic markers. Evolution, 43, 258–275.
    • (1989) Evolution , vol.43 , pp. 258-275
    • Queller, D.C.1    Goodnight, K.F.2
  • 36
    • 84914179053 scopus 로고    scopus 로고
    • Vienna, Austria, R Foundation for Statistical Computing, URL
    • R Core Team. (2013). R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing, ISBN 3-900051-07-0, URL http://www.R-project.org/
    • (2013) R: A language and environment for statistical computing
  • 37
    • 0029872999 scopus 로고    scopus 로고
    • Estimators for pairwise relatedness and individual inbreeding coefficients
    • Ritland, K. (1996). Estimators for pairwise relatedness and individual inbreeding coefficients. Genetical Research, 67, 175–185.
    • (1996) Genetical Research , vol.67 , pp. 175-185
    • Ritland, K.1
  • 38
    • 0033977405 scopus 로고    scopus 로고
    • Genetic differentiation between individuals
    • Rousset, F. (2000). Genetic differentiation between individuals. Journal of Evolutionary Biology, 13, 58–62.
    • (2000) Journal of Evolutionary Biology , vol.13 , pp. 58-62
    • Rousset, F.1
  • 40
    • 80051701354 scopus 로고    scopus 로고
    • sgd: Software for estimating spatially explicit indices of genetic diversity
    • Shirk, A. J., & Cushman, S. A. (2011). sgd: Software for estimating spatially explicit indices of genetic diversity. Molecular Ecology Resources, 11, 922–934.
    • (2011) Molecular Ecology Resources , vol.11 , pp. 922-934
    • Shirk, A.J.1    Cushman, S.A.2
  • 41
    • 84945180066 scopus 로고    scopus 로고
    • Spatially-explicit estimation of Wright's neighborhood size in continuous populations
    • Shirk, A. J., & Cushman, S. A. (2014). Spatially-explicit estimation of Wright's neighborhood size in continuous populations. Frontiers in Ecology and Evolution, 2, 1–12.
    • (2014) Frontiers in Ecology and Evolution , vol.2 , pp. 1-12
    • Shirk, A.J.1    Cushman, S.A.2
  • 42
    • 77956093703 scopus 로고    scopus 로고
    • Inferring landscape effects on gene flow: A new model selection framework
    • Shirk, A. J., Wallin, D. O., Cushman, S. A., Rice, C. G., & Warheit, K. I. (2010). Inferring landscape effects on gene flow: A new model selection framework. Molecular Ecology, 19, 3603–3619.
    • (2010) Molecular Ecology , vol.19 , pp. 3603-3619
    • Shirk, A.J.1    Wallin, D.O.2    Cushman, S.A.3    Rice, C.G.4    Warheit, K.I.5
  • 43
    • 84875712307 scopus 로고    scopus 로고
    • Landscape genetic approaches in conservation biology and management
    • Sommer, S., McDevitt, A. D., & Balkenhol, N. (2013). Landscape genetic approaches in conservation biology and management. Conservation Genetics, 14, 249–251.
    • (2013) Conservation Genetics , vol.14 , pp. 249-251
    • Sommer, S.1    McDevitt, A.D.2    Balkenhol, N.3
  • 44
    • 77956082819 scopus 로고    scopus 로고
    • Use of resistance surfaces for landscape genetic studies: Considerations for parameterization and analysis
    • Spear, S. F., Balkenhol, N., Fortin, M. J., McRae, B. H., & Scribner, K. (2010). Use of resistance surfaces for landscape genetic studies: Considerations for parameterization and analysis. Molecular Ecology, 19, 3576–3591.
    • (2010) Molecular Ecology , vol.19 , pp. 3576-3591
    • Spear, S.F.1    Balkenhol, N.2    Fortin, M.J.3    McRae, B.H.4    Scribner, K.5
  • 46
    • 54349112442 scopus 로고    scopus 로고
    • Adapting landscapes to climate change: Examples of climate-proof ecosystem networks and priority adaptation zones
    • Vos, C. C., Berry, P., Opdam, P., Baveco, H., Nijhof, B., O'Hanley, J., … Kuipers, H. (2008). Adapting landscapes to climate change: Examples of climate-proof ecosystem networks and priority adaptation zones. Journal of Applied Ecology, 45, 1722–1731.
    • (2008) Journal of Applied Ecology , vol.45 , pp. 1722-1731
    • Vos, C.C.1    Berry, P.2    Opdam, P.3    Baveco, H.4    Nijhof, B.5    O'Hanley, J.6    Kuipers, H.7
  • 47
    • 0036196697 scopus 로고    scopus 로고
    • An estimator for pairwise relatedness using molecular markers
    • Wang, J. (2002). An estimator for pairwise relatedness using molecular markers. Genetics, 160, 1203–1215.
    • (2002) Genetics , vol.160 , pp. 1203-1215
    • Wang, J.1
  • 48
    • 79953169887 scopus 로고    scopus 로고
    • Unbiased relatedness estimation in structured populations
    • Wang, J. (2011). Unbiased relatedness estimation in structured populations. Genetics, 187, 887–901.
    • (2011) Genetics , vol.187 , pp. 887-901
    • Wang, J.1
  • 49
    • 84856231285 scopus 로고    scopus 로고
    • Simulating the effects of climate change on population connectivity of American marten (Martes americana) in the northern Rocky Mountains, USA
    • Wasserman, T., Cushman, S. A., Shirk, A., Landguth, E., & Littell, J. (2012). Simulating the effects of climate change on population connectivity of American marten (Martes americana) in the northern Rocky Mountains, USA. Landscape Ecology, 27, 211–215.
    • (2012) Landscape Ecology , vol.27 , pp. 211-215
    • Wasserman, T.1    Cushman, S.A.2    Shirk, A.3    Landguth, E.4    Littell, J.5
  • 50
    • 0001771498 scopus 로고
    • Evolution in Mendelian populations
    • Wright, S. (1931). Evolution in Mendelian populations. Genetics, 16, 97–159.
    • (1931) Genetics , vol.16 , pp. 97-159
    • Wright, S.1
  • 51
    • 0001024012 scopus 로고
    • Isolation by distance
    • Wright, S. (1943). Isolation by distance. Genetics, 28, 114–138.
    • (1943) Genetics , vol.28 , pp. 114-138
    • Wright, S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.