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Volumn 8, Issue , 2017, Pages

Targeted recombination between homologous chromosomes for precise breeding in tomato

Author keywords

[No Author keywords available]

Indexed keywords

ALLELE; BIOASSAY; BREEDING; CHROMOSOME; DNA; EDIBLE SPECIES; FRUIT; GENE EXPRESSION; IMMUNE RESPONSE; MUTATION;

EID: 85019997306     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms15605     Document Type: Article
Times cited : (162)

References (53)
  • 1
    • 84886035850 scopus 로고    scopus 로고
    • Meiotic recombination in mammals: Localization and regulation
    • Baudat, F., Imai, Y., & de Massy, B. Meiotic recombination in mammals: localization and regulation. Nat. Rev. Genet. 14, 794-806 (2013).
    • (2013) Nat. Rev. Genet. , vol.14 , pp. 794-806
    • Baudat, F.1    Imai, Y.2    De Massy, B.3
  • 3
    • 79953796527 scopus 로고    scopus 로고
    • Homologous recombination in plants: An antireview
    • Lieberman-Lazarovich, M., & Levy, A. A. Homologous recombination in plants: an antireview. Methods Mol. Biol. 701, 51-65 (2011).
    • (2011) Methods Mol. Biol. , vol.701 , pp. 51-65
    • Lieberman-Lazarovich, M.1    Levy, A.A.2
  • 4
    • 84903757525 scopus 로고    scopus 로고
    • Sources of DNA double-strand breaks and models of recombinational DNA repair
    • Mehta, A., & Haber, J. E. Sources of DNA double-strand breaks and models of recombinational DNA repair. Cold Spring Harb. Perspect. Biol. 6, a016428 (2014).
    • (2014) Cold Spring Harb. Perspect. Biol. , vol.6 , pp. a016428
    • Mehta, A.1    Haber, J.E.2
  • 6
    • 84901046953 scopus 로고    scopus 로고
    • Signaling of double strand breaks and deprotected telomeres in Arabidopsis
    • Amiard, S., Gallego, M. E., & White, C. I. Signaling of double strand breaks and deprotected telomeres in Arabidopsis. Front. Plant Sci. 4, 405 (2013).
    • (2013) Front. Plant Sci. , vol.4 , pp. 405
    • Amiard, S.1    Gallego, M.E.2    White, C.I.3
  • 7
    • 29244475344 scopus 로고    scopus 로고
    • Recent advances in understanding of the DNA double-strand break repair machinery of plants
    • Bleuyard, J.-Y., Gallego, M. E., & White, C. I. Recent advances in understanding of the DNA double-strand break repair machinery of plants. DNA Repair 5, 1-12 (2006).
    • (2006) DNA Repair , vol.5 , pp. 1-12
    • Bleuyard, J.-Y.1    Gallego, M.E.2    White, C.I.3
  • 8
    • 84876161358 scopus 로고    scopus 로고
    • Alternative end-joining mechanisms: A historical perspective
    • Decottignies, A. Alternative end-joining mechanisms: a historical perspective. Front. Genet. 4, 48 (2013).
    • (2013) Front. Genet. , vol.4 , pp. 48
    • Decottignies, A.1
  • 9
    • 0033057606 scopus 로고    scopus 로고
    • How plants make ends meet: DNA double-strand break repair
    • Gorbunova, V., & Levy, A. How plants make ends meet: DNA double-strand break repair. Trends Plant Sci. 4, 263-269 (1999).
    • (1999) Trends Plant Sci. , vol.4 , pp. 263-269
    • Gorbunova, V.1    Levy, A.2
  • 10
    • 11444267813 scopus 로고    scopus 로고
    • The repair of double-strand breaks in plants: Mechanisms and consequences for genome evolution
    • Puchta, H. The repair of double-strand breaks in plants: mechanisms and consequences for genome evolution. J. Exp. Bot. 56, 1-14 (2005).
    • (2005) J. Exp. Bot. , vol.56 , pp. 1-14
    • Puchta, H.1
  • 11
    • 79952341174 scopus 로고    scopus 로고
    • Have a break: Determinants of meiotic DNA double strand break (DSB) formation and processing in plants
    • Edlinger, B., & Schlögelhofer, P. Have a break: determinants of meiotic DNA double strand break (DSB) formation and processing in plants. J. Exp. Bot. 62, 1545-1563 (2011).
    • (2011) J. Exp. Bot. , vol.62 , pp. 1545-1563
    • Edlinger, B.1    Schlögelhofer, P.2
  • 13
    • 0029946668 scopus 로고    scopus 로고
    • Two different but related mechanisms are used in plants for the repair of genomic double-strand breaks by homologous recombination
    • Puchta, H., Dujon, B., & Hohn, B. Two different but related mechanisms are used in plants for the repair of genomic double-strand breaks by homologous recombination. Proc. Natl Acad. Sci. USA 93, 5055-5060 (1996).
    • (1996) Proc. Natl Acad. Sci. USA , vol.93 , pp. 5055-5060
    • Puchta, H.1    Dujon, B.2    Hohn, B.3
  • 14
    • 0030749948 scopus 로고    scopus 로고
    • The maize transposable element Ac induces recombination between the donor site and an homologous ectopic sequence
    • Shalev, G., & Levy, A. A. The maize transposable element Ac induces recombination between the donor site and an homologous ectopic sequence. Genetics 146, 1143-1151 (1997).
    • (1997) Genetics , vol.146 , pp. 1143-1151
    • Shalev, G.1    Levy, A.A.2
  • 15
    • 78249245697 scopus 로고    scopus 로고
    • Nontransgenic genome modification in plant cells
    • Marton, I., et al. Nontransgenic genome modification in plant cells. Plant Physiol. 154, 1079-1087 (2010).
    • (2010) Plant Physiol. , vol.154 , pp. 1079-1087
    • Marton, I.1
  • 16
    • 79960064013 scopus 로고    scopus 로고
    • Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting
    • Cermak, T., et al. Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting. Nucleic Acids Res. 39, e82 (2011).
    • (2011) Nucleic Acids Res. , vol.39 , pp. e82
    • Cermak, T.1
  • 17
    • 84922910242 scopus 로고    scopus 로고
    • Genome editing in rice and wheat using the CRISPR/Cas system
    • Shan, Q., Wang, Y., Li, J., & Gao, C. Genome editing in rice and wheat using the CRISPR/Cas system. Nat. Protoc. 9, 2395-2410 (2014).
    • (2014) Nat. Protoc. , vol.9 , pp. 2395-2410
    • Shan, Q.1    Wang, Y.2    Li, J.3    Gao, C.4
  • 18
    • 84904068340 scopus 로고    scopus 로고
    • Both CRISPR/Cas-based nucleases and nickases can be used efficiently for genome engineering in Arabidopsis thaliana
    • Fauser, F., Schiml, S., & Puchta, H. Both CRISPR/Cas-based nucleases and nickases can be used efficiently for genome engineering in Arabidopsis thaliana. Plant J. 79, 348-359 (2014).
    • (2014) Plant J. , vol.79 , pp. 348-359
    • Fauser, F.1    Schiml, S.2    Puchta, H.3
  • 19
    • 84916624400 scopus 로고    scopus 로고
    • The CRISPR/Cas system can be used as nuclease for in planta gene targeting and as paired nickases for directed mutagenesis in Arabidopsis resulting in heritable progeny
    • Schiml, S., Fauser, F., & Puchta, H. The CRISPR/Cas system can be used as nuclease for in planta gene targeting and as paired nickases for directed mutagenesis in Arabidopsis resulting in heritable progeny. Plant J. 80, 1139-1150 (2014).
    • (2014) Plant J. , vol.80 , pp. 1139-1150
    • Schiml, S.1    Fauser, F.2    Puchta, H.3
  • 20
    • 84979703446 scopus 로고    scopus 로고
    • Geminivirusmediated genome editing in potato (Solanum tuberosum L) using sequencespecific nucleases
    • Butler, N. M., Baltes, N. J., Voytas, D. F., & Douches, D. S. Geminivirusmediated genome editing in potato (Solanum tuberosum L) using sequencespecific nucleases. Front. Plant Sci. 7, 1045 (2016).
    • (2016) Front. Plant Sci. , vol.7 , pp. 1045
    • Butler, N.M.1    Baltes, N.J.2    Voytas, D.F.3    Douches, D.S.4
  • 21
    • 0030813154 scopus 로고    scopus 로고
    • Non-homologous DNA end joining in plant cells is associated with deletions and filler DNA insertions
    • Gorbunova, V., & Levy, A. A. Non-homologous DNA end joining in plant cells is associated with deletions and filler DNA insertions. Nucleic Acids Res. 25, 4650-4657 (1997).
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4650-4657
    • Gorbunova, V.1    Levy, A.A.2
  • 22
    • 84863286761 scopus 로고    scopus 로고
    • Single molecule PCR reveals similar patterns of nonhomologous DSB repair in tobacco and arabidopsis
    • Lloyd, A. H., et al. Single molecule PCR reveals similar patterns of nonhomologous DSB repair in tobacco and arabidopsis. PLoS ONE 7, e32255 (2012).
    • (2012) PLoS ONE , vol.7 , pp. e32255
    • Lloyd, A.H.1
  • 23
    • 79957832472 scopus 로고    scopus 로고
    • Kinetic analysis of DNA double-strand break repair pathways in Arabidopsis
    • Charbonnel, C., Allain, E., Gallego, M. E., & White, C. I. Kinetic analysis of DNA double-strand break repair pathways in Arabidopsis. DNA Repair 10, 611-619 (2011).
    • (2011) DNA Repair , vol.10 , pp. 611-619
    • Charbonnel, C.1    Allain, E.2    Gallego, M.E.3    White, C.I.4
  • 24
    • 85009143841 scopus 로고    scopus 로고
    • CRISPR/Cas9 platforms for genome editing in plants: Developments and applications
    • Ma, X., Zhu, Q., Chen, Y., & Liu, Y.-G. CRISPR/Cas9 platforms for genome editing in plants: developments and applications. Mol. Plant 9, 961-974 (2016).
    • (2016) Mol. Plant , vol.9 , pp. 961-974
    • Ma, X.1    Zhu, Q.2    Chen, Y.3    Liu, Y.-G.4
  • 25
    • 84908584019 scopus 로고    scopus 로고
    • Efficient gene editing in tomato in the first generation using the clustered regularly interspaced short palindromic repeats/CRISPR-Associated9 system
    • Brooks, C., Nekrasov, V., Lippman, Z. B., & Van Eck, J. Efficient gene editing in tomato in the first generation using the clustered regularly interspaced short palindromic repeats/CRISPR-Associated9 system. Plant Physiol. 166, 1292-1297 (2014).
    • (2014) Plant Physiol. , vol.166 , pp. 1292-1297
    • Brooks, C.1    Nekrasov, V.2    Lippman, Z.B.3    Van Eck, J.4
  • 26
    • 84946416320 scopus 로고    scopus 로고
    • High-frequency, precise modification of the tomato genome
    • Cermák, T., et al. High-frequency, precise modification of the tomato genome. Genome Biol. 16, 232 (2015).
    • (2015) Genome Biol. , vol.16 , pp. 232
    • Cermák, T.1
  • 27
    • 0029167734 scopus 로고
    • Induction of intrachromosomal homologous recombination in whole plants
    • Puchta, H., Swoboda, P., & Hohn, B. Induction of intrachromosomal homologous recombination in whole plants. Plant J. 7, 203-210 (1995).
    • (1995) Plant J. , vol.7 , pp. 203-210
    • Puchta, H.1    Swoboda, P.2    Hohn, B.3
  • 28
    • 0141681133 scopus 로고    scopus 로고
    • Different pathways of homologous recombination are used for the repair of double-strand breaks within tandemly arranged sequences in the plant genome
    • Orel, N., Kyryk, A., & Puchta, H. Different pathways of homologous recombination are used for the repair of double-strand breaks within tandemly arranged sequences in the plant genome. Plant J. 35, 604-612 (2003).
    • (2003) Plant J. , vol.35 , pp. 604-612
    • Orel, N.1    Kyryk, A.2    Puchta, H.3
  • 29
    • 1042279123 scopus 로고    scopus 로고
    • Interchromatid and interhomolog recombination in arabidopsis Thaliana
    • Molinier, J., Ries, G., Bonhoeffer, S., & Hohn, B. Interchromatid and interhomolog recombination in Arabidopsis thaliana. Plant Cell 16, 342-352 (2004).
    • (2004) Plant Cell , vol.16 , pp. 342-352
    • Molinier, J.1    Ries, G.2    Bonhoeffer, S.3    Hohn, B.4
  • 30
    • 0030875861 scopus 로고    scopus 로고
    • Abortive gap repair: Underlying mechanism for Ds element formation
    • Rubin, E., & Levy, A. A. Abortive gap repair: underlying mechanism for Ds element formation. Mol. Cell. Biol. 17, 6294-6302 (1997).
    • (1997) Mol. Cell. Biol. , vol.17 , pp. 6294-6302
    • Rubin, E.1    Levy, A.A.2
  • 31
    • 0032779205 scopus 로고    scopus 로고
    • Double-strand break-induced recombination between ectopic homologous sequences in somatic plant cells
    • Puchta, H., et al. Double-strand break-induced recombination between ectopic homologous sequences in somatic plant cells. Genetics 152, 1173-1181 (1999).
    • (1999) Genetics , vol.152 , pp. 1173-1181
    • Puchta, H.1
  • 32
    • 0025726170 scopus 로고
    • Ac induces homologous recombination at the maize P locus
    • Athma, P., & Peterson, T. Ac induces homologous recombination at the maize P locus. Genetics 128, 163-173 (1991).
    • (1991) Genetics , vol.128 , pp. 163-173
    • Athma, P.1    Peterson, T.2
  • 33
    • 0026784957 scopus 로고
    • Active mutator elements suppress the knotted phenotype and increase recombination at the Kn1-O tandem duplication
    • Lowe, B., Mathern, J., & Hake, S. Active mutator elements suppress the knotted phenotype and increase recombination at the Kn1-O tandem duplication. Genetics 132, 813-822 (1992).
    • (1992) Genetics , vol.132 , pp. 813-822
    • Lowe, B.1    Mathern, J.2    Hake, S.3
  • 34
    • 2642710921 scopus 로고    scopus 로고
    • Recombination occurs uniformly within the bronze gene, a meiotic recombination hotspot in the maize genome
    • Dooner, H. K., & Mart?nez-Férez, I. M. Recombination occurs uniformly within the bronze gene, a meiotic recombination hotspot in the maize genome. Plant Cell 9, 1633-1646 (1997).
    • (1997) Plant Cell , vol.9 , pp. 1633-1646
    • Dooner, H.K.1    Martnez-Férez, I.M.2
  • 35
    • 82755170646 scopus 로고    scopus 로고
    • Robust crossover assurance and regulated interhomolog access maintain meiotic crossover number
    • Rosu, S., et al. Robust crossover assurance and regulated interhomolog access maintain meiotic crossover number. Science 334, 1286-1289 (2011).
    • (2011) Science , vol.334 , pp. 1286-1289
    • Rosu, S.1
  • 36
    • 0030481854 scopus 로고    scopus 로고
    • P-element-induced male recombination and gene conversion in Drosophila
    • Preston, C. R., & Engels, W. R. P-element-induced male recombination and gene conversion in Drosophila. Genetics 144, 1611-1622 (1996).
    • (1996) Genetics , vol.144 , pp. 1611-1622
    • Preston, C.R.1    Engels, W.R.2
  • 37
    • 84896717088 scopus 로고    scopus 로고
    • Is Non-homologous end-joining really an inherently errorprone process?
    • Bétermier, M., et al. Is Non-homologous end-joining really an inherently errorprone process? PLoS Genet. 10, e1004086 (2014).
    • (2014) PLoS Genet. , vol.10 , pp. e1004086
    • Bétermier, M.1
  • 38
    • 84903579362 scopus 로고    scopus 로고
    • Repair of site-specific DNA double-strand breaks in barley occurs via diverse pathways primarily involving the sister chromatid
    • Vu, G. T. H., et al. Repair of site-specific dna double-strand breaks in barley occurs via diverse pathways primarily involving the sister chromatid. Plant Cell 26, 2156-2167 (2014).
    • (2014) Plant Cell , vol.26 , pp. 2156-2167
    • Vu, G.T.H.1
  • 39
    • 84869232168 scopus 로고    scopus 로고
    • Epistasis in tomato color mutations involves regulation of phytoene synthase 1 expression by ciscarotenoids
    • Kachanovsky, D. E., Filler, S., Isaacson, T., & Hirschberg, J. Epistasis in tomato color mutations involves regulation of phytoene synthase 1 expression by ciscarotenoids. Proc. Natl Acad. Sci. USA 109, 19021-19026 (2012).
    • (2012) Proc. Natl Acad. Sci. USA , vol.109 , pp. 19021-19026
    • Kachanovsky, D.E.1    Filler, S.2    Isaacson, T.3    Hirschberg, J.4
  • 40
    • 0036846180 scopus 로고    scopus 로고
    • The role of double-strand break-induced allelic homologous recombination in somatic plant cells
    • Gisler, B., Salomon, S., & Puchta, H. The role of double-strand break-induced allelic homologous recombination in somatic plant cells. Plant J. 32, 277-284 (2002).
    • (2002) Plant J. , vol.32 , pp. 277-284
    • Gisler, B.1    Salomon, S.2    Puchta, H.3
  • 41
    • 0016274162 scopus 로고
    • Somatic variations on a yellow mutant in Nicotiana tabacum L a1+/a1a2+/a2) i Non-reciprocal genetic events occurring in leaf cells
    • Dulieu, H. L. Somatic variations on a yellow mutant in Nicotiana tabacum L. (a1+/a1a2+/a2) I. Non-reciprocal genetic events occurring in leaf cells. Mutat. Res. Mol. Mech. Mutagen. 25, 289-304 (1974).
    • (1974) Mutat. Res. Mol. Mech. Mutagen. , vol.25 , pp. 289-304
    • Dulieu, H.L.1
  • 42
    • 84974133693 scopus 로고    scopus 로고
    • Mitotic crossing-over in a higher plant
    • Carlson, P. S. Mitotic crossing-over in a higher plant. Genet. Res. 24, 109-112 (2016).
    • (2016) Genet. Res. , vol.24 , pp. 109-112
    • Carlson, P.S.1
  • 43
    • 18044364481 scopus 로고    scopus 로고
    • Two meiotic crossover classes cohabit in arabidopsis: One is dependent on MER3, whereas the other one is not
    • Mercier, R., et al. Two meiotic crossover classes cohabit in arabidopsis: one is dependent on MER3, whereas the other one is not. Curr. Biol. 15, 692-701 (2005).
    • (2005) Curr. Biol. , vol.15 , pp. 692-701
    • Mercier, R.1
  • 44
    • 84888236250 scopus 로고    scopus 로고
    • Contrasted patterns of crossover and non-crossover at Arabidopsis thaliana meiotic recombination hotspots
    • Drouaud, J., et al. Contrasted patterns of crossover and non-crossover at Arabidopsis thaliana meiotic recombination hotspots. PLoS Genet. 9, e1003922 (2013).
    • (2013) PLoS Genet. , vol.9 , pp. e1003922
    • Drouaud, J.1
  • 45
    • 0028221221 scopus 로고
    • Fineresolution mapping of spontaneous and double-strand break-induced gene conversion tracts in saccharomyces cerevisiae reveals reversible mitotic conversion polarity
    • Sweetser, D. B., Hough, H., Whelden, J. F., Arbuckle, M., & Nickoloff, J. A. Fineresolution mapping of spontaneous and double-strand break-induced gene conversion tracts in saccharomyces cerevisiae reveals reversible mitotic conversion polarity. Mol. Cell Biol. 14, 3863-3875 (1994).
    • (1994) Mol. Cell Biol. , vol.14 , pp. 3863-3875
    • Sweetser, D.B.1    Hough, H.2    Whelden, J.F.3    Arbuckle, M.4    Nickoloff, J.A.5
  • 46
    • 84906791314 scopus 로고    scopus 로고
    • Frequent Interchromosomal template switches during gene conversion in S cerevisiae
    • Tsaponina, O., & Haber, J. E. Frequent Interchromosomal template switches during gene conversion in S. cerevisiae. Mol. Cell 55, 615-625 (2014).
    • (2014) Mol. Cell , vol.55 , pp. 615-625
    • Tsaponina, O.1    Haber, J.E.2
  • 47
    • 0034523060 scopus 로고    scopus 로고
    • A new hyperrecombinogenic mutant of Nicotiana tabacum
    • Gorbunova, V., et al. A new hyperrecombinogenic mutant of Nicotiana tabacum. Plant J. 24, 601-611 (2000).
    • (2000) Plant J. , vol.24 , pp. 601-611
    • Gorbunova, V.1
  • 48
    • 85027948074 scopus 로고    scopus 로고
    • Comparative assessments of CRISPR-Cas nucleases cleavage efficiency in planta
    • Johnson, R. A., Gurevich, V., Filler, S., Samach, A., & Levy, A. A. Comparative assessments of CRISPR-Cas nucleases? cleavage efficiency in planta. Plant Mol. Biol. 87, 143-156 (2015).
    • (2015) Plant Mol. Biol. , vol.87 , pp. 143-156
    • Johnson, R.A.1    Gurevich, V.2    Filler, S.3    Samach, A.4    Levy, A.A.5
  • 49
    • 0025375909 scopus 로고
    • U6 snRNA genes of arabidopsis are transcribed by RNA polymerase III but contain the same two upstream promoter elements as RNA polymerase ll-Transcribed U-snRNA genes
    • Waibel, F., & Filipowicz, W. U6 snRNA genes of arabidopsis are transcribed by RNA polymerase III but contain the same two upstream promoter elements as RNA polymerase ll-Transcribed U-snRNA genes. Nucleic Acids Res. 18, 3451-3458 (1990).
    • (1990) Nucleic Acids Res. , vol.18 , pp. 3451-3458
    • Waibel, F.1    Filipowicz, W.2
  • 50
    • 33947612596 scopus 로고    scopus 로고
    • Varied transcriptional efficiencies of multiple arabidopsis u6 small nuclear RNA genes
    • Li, X., Jiang, D., Yong, K., & Zhang, D. Varied Transcriptional Efficiencies of Multiple Arabidopsis U6 Small Nuclear RNA Genes. J. Integr. Plant Biol. 49, 222-229 (2007).
    • (2007) J. Integr. Plant Biol. , vol.49 , pp. 222-229
    • Li, X.1    Jiang, D.2    Yong, K.3    Zhang, D.4
  • 52
    • 79960051013 scopus 로고    scopus 로고
    • Goldenbraid: An iterative cloning system for standardized assembly of reusable genetic modules
    • Sarrion-Perdigones, A., et al. Goldenbraid: an iterative cloning system for standardized assembly of reusable genetic modules. PLoS ONE 6, e21622 (2011).
    • (2011) PLoS ONE , vol.6 , pp. e21622
    • Sarrion-Perdigones, A.1
  • 53
    • 84875207585 scopus 로고    scopus 로고
    • High-Throughput chromatin immunoprecipitation for genome-wide mapping of in vivo protein-DNA interactions and epigenomic states
    • Blecher-Gonen, R., et al. High-Throughput chromatin immunoprecipitation for genome-wide mapping of in vivo protein-DNA interactions and epigenomic states. Nat. Protoc. 8, 539-554 (2013).
    • (2013) Nat. Protoc. , vol.8 , pp. 539-554
    • Blecher-Gonen, R.1


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