-
1
-
-
84976902062
-
p53 induces formation of NEAT1 lncRNA-containing paraspeckles that modulate replication stress response and chemosensitivity
-
Adriaens C, Standaert L, Barra J, Latil M, Verfaillie A, Kalev P, Boeckx B, Wijnhoven PW, Radaelli E, Vermi W, Leucci E, Lapouge G, Beck B, van den Oord J, Nakagawa S, Hirose T, Sablina AA, Lambrechts D, Aerts S, Blanpain C et al (2016) p53 induces formation of NEAT1 lncRNA-containing paraspeckles that modulate replication stress response and chemosensitivity. Nat Med 22: 861–868
-
(2016)
Nat Med
, vol.22
, pp. 861-868
-
-
Adriaens, C.1
Standaert, L.2
Barra, J.3
Latil, M.4
Verfaillie, A.5
Kalev, P.6
Boeckx, B.7
Wijnhoven, P.W.8
Radaelli, E.9
Vermi, W.10
Leucci, E.11
Lapouge, G.12
Beck, B.13
van den Oord, J.14
Nakagawa, S.15
Hirose, T.16
Sablina, A.A.17
Lambrechts, D.18
Aerts, S.19
Blanpain, C.20
more..
-
2
-
-
84863012035
-
Immobilization of proteins in the nucleolus by ribosomal intergenic spacer noncoding RNA
-
Audas TE, Jacob MD, Lee S (2012) Immobilization of proteins in the nucleolus by ribosomal intergenic spacer noncoding RNA. Mol Cell 45: 147–157
-
(2012)
Mol Cell
, vol.45
, pp. 147-157
-
-
Audas, T.E.1
Jacob, M.D.2
Lee, S.3
-
4
-
-
67649976463
-
Germline P granules are liquid droplets that localize by controlled dissolution/condensation
-
Brangwynne CP, Eckmann CR, Courson DS, Rybarska A, Hoege C, Gharakhani J, Julicher F, Hyman AA (2009) Germline P granules are liquid droplets that localize by controlled dissolution/condensation. Science 324: 1729–1732
-
(2009)
Science
, vol.324
, pp. 1729-1732
-
-
Brangwynne, C.P.1
Eckmann, C.R.2
Courson, D.S.3
Rybarska, A.4
Hoege, C.5
Gharakhani, J.6
Julicher, F.7
Hyman, A.A.8
-
5
-
-
84944894243
-
Residue-by-residue view of in vitro FUS granules that bind the C-terminal domain of RNA polymerase II
-
Burke KA, Janke AM, Rhine CL, Fawzi NL (2015) Residue-by-residue view of in vitro FUS granules that bind the C-terminal domain of RNA polymerase II. Mol Cell 60: 231–241
-
(2015)
Mol Cell
, vol.60
, pp. 231-241
-
-
Burke, K.A.1
Janke, A.M.2
Rhine, C.L.3
Fawzi, N.L.4
-
6
-
-
84923284989
-
The oestrogen receptor alpha-regulated lncRNA NEAT1 is a critical modulator of prostate cancer
-
Chakravarty D, Sboner A, Nair SS, Giannopoulou E, Li R, Hennig S, Mosquera JM, Pauwels J, Park K, Kossai M, MacDonald TY, Fontugne J, Erho N, Vergara IA, Ghadessi M, Davicioni E, Jenkins RB, Palanisamy N, Chen Z, Nakagawa S et al (2014) The oestrogen receptor alpha-regulated lncRNA NEAT1 is a critical modulator of prostate cancer. Nat Commun 5: 5383
-
(2014)
Nat Commun
, vol.5
, pp. 5383
-
-
Chakravarty, D.1
Sboner, A.2
Nair, S.S.3
Giannopoulou, E.4
Li, R.5
Hennig, S.6
Mosquera, J.M.7
Pauwels, J.8
Park, K.9
Kossai, M.10
MacDonald, T.Y.11
Fontugne, J.12
Erho, N.13
Vergara, I.A.14
Ghadessi, M.15
Davicioni, E.16
Jenkins, R.B.17
Palanisamy, N.18
Chen, Z.19
Nakagawa, S.20
more..
-
7
-
-
68949212914
-
Altered nuclear retention of mRNAs containing inverted repeats in human embryonic stem cells: functional role of a nuclear noncoding RNA
-
Chen LL, Carmichael GG (2009) Altered nuclear retention of mRNAs containing inverted repeats in human embryonic stem cells: functional role of a nuclear noncoding RNA. Mol Cell 35: 467–478
-
(2009)
Mol Cell
, vol.35
, pp. 467-478
-
-
Chen, L.L.1
Carmichael, G.G.2
-
8
-
-
84974530648
-
cAMP/CREB-regulated LINC00473 marks LKB1-inactivated lung cancer and mediates tumor growth
-
Chen Z, Li JL, Lin S, Cao C, Gimbrone NT, Yang R, Fu DA, Carper MB, Haura EB, Schabath MB, Lu J, Amelio AL, Cress WD, Kaye FJ, Wu L (2016) cAMP/CREB-regulated LINC00473 marks LKB1-inactivated lung cancer and mediates tumor growth. J Clin Invest 126: 2267–2279
-
(2016)
J Clin Invest
, vol.126
, pp. 2267-2279
-
-
Chen, Z.1
Li, J.L.2
Lin, S.3
Cao, C.4
Gimbrone, N.T.5
Yang, R.6
Fu, D.A.7
Carper, M.B.8
Haura, E.B.9
Schabath, M.B.10
Lu, J.11
Amelio, A.L.12
Cress, W.D.13
Kaye, F.J.14
Wu, L.15
-
9
-
-
84929355793
-
Systematic discovery of Xist RNA binding proteins
-
Chu C, Zhang QC, da Rocha ST, Flynn RA, Bharadwaj M, Calabrese JM, Magnuson T, Heard E, Chang HY (2015) Systematic discovery of Xist RNA binding proteins. Cell 161: 404–416
-
(2015)
Cell
, vol.161
, pp. 404-416
-
-
Chu, C.1
Zhang, Q.C.2
da Rocha, S.T.3
Flynn, R.A.4
Bharadwaj, M.5
Calabrese, J.M.6
Magnuson, T.7
Heard, E.8
Chang, H.Y.9
-
10
-
-
84953368617
-
Architectural RNAs (arcRNAs): a class of long noncoding RNAs that function as the scaffold of nuclear bodies
-
Chujo T, Yamazaki T, Hirose T (2016) Architectural RNAs (arcRNAs): a class of long noncoding RNAs that function as the scaffold of nuclear bodies. Biochim Biophys Acta 1859: 139–146
-
(2016)
Biochim Biophys Acta
, vol.1859
, pp. 139-146
-
-
Chujo, T.1
Yamazaki, T.2
Hirose, T.3
-
11
-
-
78751698195
-
Ftx is a non-coding RNA which affects Xist expression and chromatin structure within the X-inactivation center region
-
Chureau C, Chantalat S, Romito A, Galvani A, Duret L, Avner P, Rougeulle C (2011) Ftx is a non-coding RNA which affects Xist expression and chromatin structure within the X-inactivation center region. Hum Mol Genet 20: 705–718
-
(2011)
Hum Mol Genet
, vol.20
, pp. 705-718
-
-
Chureau, C.1
Chantalat, S.2
Romito, A.3
Galvani, A.4
Duret, L.5
Avner, P.6
Rougeulle, C.7
-
12
-
-
62549117314
-
An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles
-
Clemson CM, Hutchinson JN, Sara SA, Ensminger AW, Fox AH, Chess A, Lawrence JB (2009) An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles. Mol Cell 33: 717–726
-
(2009)
Mol Cell
, vol.33
, pp. 717-726
-
-
Clemson, C.M.1
Hutchinson, J.N.2
Sara, S.A.3
Ensminger, A.W.4
Fox, A.H.5
Chess, A.6
Lawrence, J.B.7
-
13
-
-
0037039475
-
Paraspeckles: a novel nuclear domain
-
Fox AH, Lam YW, Leung AK, Lyon CE, Andersen J, Mann M, Lamond AI (2002) Paraspeckles: a novel nuclear domain. Curr Biol 12: 13–25
-
(2002)
Curr Biol
, vol.12
, pp. 13-25
-
-
Fox, A.H.1
Lam, Y.W.2
Leung, A.K.3
Lyon, C.E.4
Andersen, J.5
Mann, M.6
Lamond, A.I.7
-
14
-
-
27644541914
-
P54nrb forms a heterodimer with PSP1 that localizes to paraspeckles in an RNA-dependent manner
-
Fox AH, Bond CS, Lamond AI (2005) P54nrb forms a heterodimer with PSP1 that localizes to paraspeckles in an RNA-dependent manner. Mol Biol Cell 16: 5304–5315
-
(2005)
Mol Biol Cell
, vol.16
, pp. 5304-5315
-
-
Fox, A.H.1
Bond, C.S.2
Lamond, A.I.3
-
15
-
-
30544448358
-
TLS facilitates transport of mRNA encoding an actin-stabilizing protein to dendritic spines
-
Fujii R, Takumi T (2005) TLS facilitates transport of mRNA encoding an actin-stabilizing protein to dendritic spines. J Cell Sci 118: 5755–5765
-
(2005)
J Cell Sci
, vol.118
, pp. 5755-5765
-
-
Fujii, R.1
Takumi, T.2
-
16
-
-
9444279617
-
Stress granule assembly is mediated by prion-like aggregation of TIA-1
-
Gilks N, Kedersha N, Ayodele M, Shen L, Stoecklin G, Dember LM, Anderson P (2004) Stress granule assembly is mediated by prion-like aggregation of TIA-1. Mol Biol Cell 15: 5383–5398
-
(2004)
Mol Biol Cell
, vol.15
, pp. 5383-5398
-
-
Gilks, N.1
Kedersha, N.2
Ayodele, M.3
Shen, L.4
Stoecklin, G.5
Dember, L.M.6
Anderson, P.7
-
17
-
-
84896840947
-
Stable C0T-1 repeat RNA is abundant and is associated with euchromatic interphase chromosomes
-
Hall LL, Carone DM, Gomez AV, Kolpa HJ, Byron M, Mehta N, Fackelmayer FO, Lawrence JB (2014) Stable C0T-1 repeat RNA is abundant and is associated with euchromatic interphase chromosomes. Cell 156: 907–919
-
(2014)
Cell
, vol.156
, pp. 907-919
-
-
Hall, L.L.1
Carone, D.M.2
Gomez, A.V.3
Kolpa, H.J.4
Byron, M.5
Mehta, N.6
Fackelmayer, F.O.7
Lawrence, J.B.8
-
18
-
-
84943801809
-
Prion-like domains in RNA binding proteins are essential for building subnuclear paraspeckles
-
Hennig S, Kong G, Mannen T, Sadowska A, Kobelke S, Blythe A, Knott GJ, Iyer KS, Ho D, Newcombe EA, Hosoki K, Goshima N, Kawaguchi T, Hatters D, Trinkle-Mulcahy L, Hirose T, Bond CS, Fox AH (2015) Prion-like domains in RNA binding proteins are essential for building subnuclear paraspeckles. J Cell Biol 210: 529–539
-
(2015)
J Cell Biol
, vol.210
, pp. 529-539
-
-
Hennig, S.1
Kong, G.2
Mannen, T.3
Sadowska, A.4
Kobelke, S.5
Blythe, A.6
Knott, G.J.7
Iyer, K.S.8
Ho, D.9
Newcombe, E.A.10
Hosoki, K.11
Goshima, N.12
Kawaguchi, T.13
Hatters, D.14
Trinkle-Mulcahy, L.15
Hirose, T.16
Bond, C.S.17
Fox, A.H.18
-
19
-
-
84899833919
-
Elements and machinery of non-coding RNAs: toward their taxonomy
-
Hirose T, Mishima Y, Tomari Y (2014a) Elements and machinery of non-coding RNAs: toward their taxonomy. EMBO Rep 15: 489–507
-
(2014)
EMBO Rep
, vol.15
, pp. 489-507
-
-
Hirose, T.1
Mishima, Y.2
Tomari, Y.3
-
20
-
-
84891800602
-
NEAT1 long noncoding RNA regulates transcription via protein sequestration within subnuclear bodies
-
Hirose T, Virnicchi G, Tanigawa A, Naganuma T, Li R, Kimura H, Yokoi T, Nakagawa S, Benard M, Fox AH, Pierron G (2014b) NEAT1 long noncoding RNA regulates transcription via protein sequestration within subnuclear bodies. Mol Biol Cell 25: 169–183
-
(2014)
Mol Biol Cell
, vol.25
, pp. 169-183
-
-
Hirose, T.1
Virnicchi, G.2
Tanigawa, A.3
Naganuma, T.4
Li, R.5
Kimura, H.6
Yokoi, T.7
Nakagawa, S.8
Benard, M.9
Fox, A.H.10
Pierron, G.11
-
21
-
-
84893452948
-
Long noncoding RNA NEAT1-dependent SFPQ relocation from promoter region to paraspeckle mediates IL8 expression upon immune stimuli
-
Imamura K, Imamachi N, Akizuki G, Kumakura M, Kawaguchi A, Nagata K, Kato A, Kawaguchi Y, Sato H, Yoneda M, Kai C, Yada T, Suzuki Y, Yamada T, Ozawa T, Kaneki K, Inoue T, Kobayashi M, Kodama T, Wada Y et al (2014) Long noncoding RNA NEAT1-dependent SFPQ relocation from promoter region to paraspeckle mediates IL8 expression upon immune stimuli. Mol Cell 53: 393–406
-
(2014)
Mol Cell
, vol.53
, pp. 393-406
-
-
Imamura, K.1
Imamachi, N.2
Akizuki, G.3
Kumakura, M.4
Kawaguchi, A.5
Nagata, K.6
Kato, A.7
Kawaguchi, Y.8
Sato, H.9
Yoneda, M.10
Kai, C.11
Yada, T.12
Suzuki, Y.13
Yamada, T.14
Ozawa, T.15
Kaneki, K.16
Inoue, T.17
Kobayashi, M.18
Kodama, T.19
Wada, Y.20
more..
-
22
-
-
84860872161
-
Cell-free formation of RNA granules: low complexity sequence domains form dynamic fibers within hydrogels
-
Kato M, Han TW, Xie S, Shi K, Du X, Wu LC, Mirzaei H, Goldsmith EJ, Longgood J, Pei J, Grishin NV, Frantz DE, Schneider JW, Chen S, Li L, Sawaya MR, Eisenberg D, Tycko R, McKnight SL (2012) Cell-free formation of RNA granules: low complexity sequence domains form dynamic fibers within hydrogels. Cell 149: 753–767
-
(2012)
Cell
, vol.149
, pp. 753-767
-
-
Kato, M.1
Han, T.W.2
Xie, S.3
Shi, K.4
Du, X.5
Wu, L.C.6
Mirzaei, H.7
Goldsmith, E.J.8
Longgood, J.9
Pei, J.10
Grishin, N.V.11
Frantz, D.E.12
Schneider, J.W.13
Chen, S.14
Li, L.15
Sawaya, M.R.16
Eisenberg, D.17
Tycko, R.18
McKnight, S.L.19
-
23
-
-
84929466810
-
SWI/SNF chromatin-remodeling complexes function in noncoding RNA-dependent assembly of nuclear bodies
-
Kawaguchi T, Tanigawa A, Naganuma T, Ohkawa Y, Souquere S, Pierron G, Hirose T (2015) SWI/SNF chromatin-remodeling complexes function in noncoding RNA-dependent assembly of nuclear bodies. Proc Natl Acad Sci USA 112: 4304–4309
-
(2015)
Proc Natl Acad Sci USA
, vol.112
, pp. 4304-4309
-
-
Kawaguchi, T.1
Tanigawa, A.2
Naganuma, T.3
Ohkawa, Y.4
Souquere, S.5
Pierron, G.6
Hirose, T.7
-
24
-
-
84862151933
-
The tip of the iceberg: RNA-binding proteins with prion-like domains in neurodegenerative disease
-
King OD, Gitler AD, Shorter J (2012) The tip of the iceberg: RNA-binding proteins with prion-like domains in neurodegenerative disease. Brain Res 1462: 61–80
-
(2012)
Brain Res
, vol.1462
, pp. 61-80
-
-
King, O.D.1
Gitler, A.D.2
Shorter, J.3
-
25
-
-
84960359414
-
Non-coding RNA LINC00473 mediates decidualization of human endometrial stromal cells in response to cAMP signaling
-
Liang XH, Deng WB, Liu YF, Liang YX, Fan ZM, Gu XW, Liu JL, Sha AG, Diao HL, Yang ZM (2016) Non-coding RNA LINC00473 mediates decidualization of human endometrial stromal cells in response to cAMP signaling. Sci Rep 6: 22744
-
(2016)
Sci Rep
, vol.6
, pp. 22744
-
-
Liang, X.H.1
Deng, W.B.2
Liu, Y.F.3
Liang, Y.X.4
Fan, Z.M.5
Gu, X.W.6
Liu, J.L.7
Sha, A.G.8
Diao, H.L.9
Yang, Z.M.10
-
26
-
-
84980027614
-
The Sam68 nuclear body is composed of two RNase-sensitive substructures joined by the adaptor HNRNPL
-
Mannen T, Yamashita S, Tomita K, Goshima N, Hirose T (2016) The Sam68 nuclear body is composed of two RNase-sensitive substructures joined by the adaptor HNRNPL. J Cell Biol 214: 45–59
-
(2016)
J Cell Biol
, vol.214
, pp. 45-59
-
-
Mannen, T.1
Yamashita, S.2
Tomita, K.3
Goshima, N.4
Hirose, T.5
-
27
-
-
78650511795
-
Direct visualization of the co-transcriptional assembly of a nuclear body by noncoding RNAs
-
Mao YS, Sunwoo H, Zhang B, Spector DL (2011) Direct visualization of the co-transcriptional assembly of a nuclear body by noncoding RNAs. Nat Cell Biol 13: 95–101
-
(2011)
Nat Cell Biol
, vol.13
, pp. 95-101
-
-
Mao, Y.S.1
Sunwoo, H.2
Zhang, B.3
Spector, D.L.4
-
28
-
-
77957740495
-
The evolution of human segmental duplications and the core duplicon hypothesis
-
Marques-Bonet T, Eichler EE (2009) The evolution of human segmental duplications and the core duplicon hypothesis. Cold Spring Harb Symp Quant Biol 74: 355–362
-
(2009)
Cold Spring Harb Symp Quant Biol
, vol.74
, pp. 355-362
-
-
Marques-Bonet, T.1
Eichler, E.E.2
-
29
-
-
84956888100
-
CCAT1 is an enhancer-templated RNA that predicts BET sensitivity in colorectal cancer
-
McCleland ML, Mesh K, Lorenzana E, Chopra VS, Segal E, Watanabe C, Haley B, Mayba O, Yaylaoglu M, Gnad F, Firestein R (2016) CCAT1 is an enhancer-templated RNA that predicts BET sensitivity in colorectal cancer. J Clin Invest 126: 639–652
-
(2016)
J Clin Invest
, vol.126
, pp. 639-652
-
-
McCleland, M.L.1
Mesh, K.2
Lorenzana, E.3
Chopra, V.S.4
Segal, E.5
Watanabe, C.6
Haley, B.7
Mayba, O.8
Yaylaoglu, M.9
Gnad, F.10
Firestein, R.11
-
30
-
-
84947996330
-
Simultaneous multicolor detection of RNA and proteins using super-resolution microscopy
-
Mito M, Kawaguchi T, Hirose T, Nakagawa S (2016) Simultaneous multicolor detection of RNA and proteins using super-resolution microscopy. Methods 98: 158–165
-
(2016)
Methods
, vol.98
, pp. 158-165
-
-
Mito, M.1
Kawaguchi, T.2
Hirose, T.3
Nakagawa, S.4
-
31
-
-
84944907005
-
Phase separation by low complexity domains promotes stress granule assembly and drives pathological fibrillization
-
Molliex A, Temirov J, Lee J, Coughlin M, Kanagaraj AP, Kim HJ, Mittag T, Taylor JP (2015) Phase separation by low complexity domains promotes stress granule assembly and drives pathological fibrillization. Cell 163: 123–133
-
(2015)
Cell
, vol.163
, pp. 123-133
-
-
Molliex, A.1
Temirov, J.2
Lee, J.3
Coughlin, M.4
Kanagaraj, A.P.5
Kim, H.J.6
Mittag, T.7
Taylor, J.P.8
-
32
-
-
84867575580
-
Alternative 3'-end processing of long noncoding RNA initiates construction of nuclear paraspeckles
-
Naganuma T, Nakagawa S, Tanigawa A, Sasaki YF, Goshima N, Hirose T (2012) Alternative 3'-end processing of long noncoding RNA initiates construction of nuclear paraspeckles. EMBO J 31: 4020–4034
-
(2012)
EMBO J
, vol.31
, pp. 4020-4034
-
-
Naganuma, T.1
Nakagawa, S.2
Tanigawa, A.3
Sasaki, Y.F.4
Goshima, N.5
Hirose, T.6
-
33
-
-
84864033675
-
Malat1 is not an essential component of nuclear speckles in mice
-
Nakagawa S, Ip JY, Shioi G, Tripathi V, Zong X, Hirose T, Prasanth KV (2012) Malat1 is not an essential component of nuclear speckles in mice. RNA 18: 1487–1499
-
(2012)
RNA
, vol.18
, pp. 1487-1499
-
-
Nakagawa, S.1
Ip, J.Y.2
Shioi, G.3
Tripathi, V.4
Zong, X.5
Hirose, T.6
Prasanth, K.V.7
-
34
-
-
84911466128
-
The lncRNA Neat1 is required for corpus luteum formation and the establishment of pregnancy in a subpopulation of mice
-
Nakagawa S, Shimada M, Yanaka K, Mito M, Arai T, Takahashi E, Fujita Y, Fujimori T, Standaert L, Marine JC, Hirose T (2014) The lncRNA Neat1 is required for corpus luteum formation and the establishment of pregnancy in a subpopulation of mice. Development 141: 4618–4627
-
(2014)
Development
, vol.141
, pp. 4618-4627
-
-
Nakagawa, S.1
Shimada, M.2
Yanaka, K.3
Mito, M.4
Arai, T.5
Takahashi, E.6
Fujita, Y.7
Fujimori, T.8
Standaert, L.9
Marine, J.C.10
Hirose, T.11
-
35
-
-
80053932983
-
Stress-responsive maturation of Clk1/4 pre-mRNAs promotes phosphorylation of SR splicing factor
-
Ninomiya K, Kataoka N, Hagiwara M (2011) Stress-responsive maturation of Clk1/4 pre-mRNAs promotes phosphorylation of SR splicing factor. J Cell Biol 195: 27–40
-
(2011)
J Cell Biol
, vol.195
, pp. 27-40
-
-
Ninomiya, K.1
Kataoka, N.2
Hagiwara, M.3
-
36
-
-
0033763021
-
Omega speckles - a novel class of nuclear speckles containing hnRNPs associated with noncoding hsr-omega RNA in Drosophila
-
Prasanth KV, Rajendra TK, Lal AK, Lakhotia SC (2000) Omega speckles - a novel class of nuclear speckles containing hnRNPs associated with noncoding hsr-omega RNA in Drosophila. J Cell Sci 113(Pt 19): 3485–3497
-
(2000)
J Cell Sci
, vol.113
, pp. 3485-3497
-
-
Prasanth, K.V.1
Rajendra, T.K.2
Lal, A.K.3
Lakhotia, S.C.4
-
37
-
-
26844440157
-
Regulating gene expression through RNA nuclear retention
-
Prasanth KV, Prasanth SG, Xuan Z, Hearn S, Freier SM, Bennett CF, Zhang MQ, Spector DL (2005) Regulating gene expression through RNA nuclear retention. Cell 123: 249–263
-
(2005)
Cell
, vol.123
, pp. 249-263
-
-
Prasanth, K.V.1
Prasanth, S.G.2
Xuan, Z.3
Hearn, S.4
Freier, S.M.5
Bennett, C.F.6
Zhang, M.Q.7
Spector, D.L.8
-
38
-
-
0035859102
-
Sensitive detection of pathological prion protein by cyclic amplification of protein misfolding
-
Saborio GP, Permanne B, Soto C (2001) Sensitive detection of pathological prion protein by cyclic amplification of protein misfolding. Nature 411: 810–813
-
(2001)
Nature
, vol.411
, pp. 810-813
-
-
Saborio, G.P.1
Permanne, B.2
Soto, C.3
-
39
-
-
84905262730
-
Improved vectors and genome-wide libraries for CRISPR screening
-
Sanjana NE, Shalem O, Zhang F (2014) Improved vectors and genome-wide libraries for CRISPR screening. Nat Methods 11: 783–784
-
(2014)
Nat Methods
, vol.11
, pp. 783-784
-
-
Sanjana, N.E.1
Shalem, O.2
Zhang, F.3
-
40
-
-
62449319486
-
MENepsilon/beta noncoding RNAs are essential for structural integrity of nuclear paraspeckles
-
Sasaki YT, Ideue T, Sano M, Mituyama T, Hirose T (2009) MENepsilon/beta noncoding RNAs are essential for structural integrity of nuclear paraspeckles. Proc Natl Acad Sci USA 106: 2525–2530
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 2525-2530
-
-
Sasaki, Y.T.1
Ideue, T.2
Sano, M.3
Mituyama, T.4
Hirose, T.5
-
41
-
-
18244366043
-
Dynamic sorting of nuclear components into distinct nucleolar caps during transcriptional inhibition
-
Shav-Tal Y, Blechman J, Darzacq X, Montagna C, Dye BT, Patton JG, Singer RH, Zipori D (2005) Dynamic sorting of nuclear components into distinct nucleolar caps during transcriptional inhibition. Mol Biol Cell 16: 2395–2413
-
(2005)
Mol Biol Cell
, vol.16
, pp. 2395-2413
-
-
Shav-Tal, Y.1
Blechman, J.2
Darzacq, X.3
Montagna, C.4
Dye, B.T.5
Patton, J.G.6
Singer, R.H.7
Zipori, D.8
-
42
-
-
79551593011
-
Nucleation of nuclear bodies by RNA
-
Shevtsov SP, Dundr M (2011) Nucleation of nuclear bodies by RNA. Nat Cell Biol 13: 167–173
-
(2011)
Nat Cell Biol
, vol.13
, pp. 167-173
-
-
Shevtsov, S.P.1
Dundr, M.2
-
43
-
-
84930704484
-
The clothes make the mRNA: past and present trends in mRNP fashion
-
Singh G, Pratt G, Yeo GW, Moore MJ (2015) The clothes make the mRNA: past and present trends in mRNP fashion. Annu Rev Biochem 84: 325–354
-
(2015)
Annu Rev Biochem
, vol.84
, pp. 325-354
-
-
Singh, G.1
Pratt, G.2
Yeo, G.W.3
Moore, M.J.4
-
44
-
-
34548291568
-
The mRNA-like noncoding RNA Gomafu constitutes a novel nuclear domain in a subset of neurons
-
Sone M, Hayashi T, Tarui H, Agata K, Takeichi M, Nakagawa S (2007) The mRNA-like noncoding RNA Gomafu constitutes a novel nuclear domain in a subset of neurons. J Cell Sci 120: 2498–2506
-
(2007)
J Cell Sci
, vol.120
, pp. 2498-2506
-
-
Sone, M.1
Hayashi, T.2
Tarui, H.3
Agata, K.4
Takeichi, M.5
Nakagawa, S.6
-
45
-
-
78649637489
-
Highly ordered spatial organization of the structural long noncoding NEAT1 RNAs within paraspeckle nuclear bodies
-
Souquere S, Beauclair G, Harper F, Fox A, Pierron G (2010) Highly ordered spatial organization of the structural long noncoding NEAT1 RNAs within paraspeckle nuclear bodies. Mol Biol Cell 21: 4020–4027
-
(2010)
Mol Biol Cell
, vol.21
, pp. 4020-4027
-
-
Souquere, S.1
Beauclair, G.2
Harper, F.3
Fox, A.4
Pierron, G.5
-
46
-
-
84911486777
-
The long noncoding RNA Neat1 is required for mammary gland development and lactation
-
Standaert L, Adriaens C, Radaelli E, Van Keymeulen A, Blanpain C, Hirose T, Nakagawa S, Marine JC (2014) The long noncoding RNA Neat1 is required for mammary gland development and lactation. RNA 20: 1844–1849
-
(2014)
RNA
, vol.20
, pp. 1844-1849
-
-
Standaert, L.1
Adriaens, C.2
Radaelli, E.3
Van Keymeulen, A.4
Blanpain, C.5
Hirose, T.6
Nakagawa, S.7
Marine, J.C.8
-
47
-
-
61849113891
-
MEN epsilon/beta nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles
-
Sunwoo H, Dinger ME, Wilusz JE, Amaral PP, Mattick JS, Spector DL (2009) MEN epsilon/beta nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles. Genome Res 19: 347–359
-
(2009)
Genome Res
, vol.19
, pp. 347-359
-
-
Sunwoo, H.1
Dinger, M.E.2
Wilusz, J.E.3
Amaral, P.P.4
Mattick, J.S.5
Spector, D.L.6
-
48
-
-
77956927823
-
The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation
-
Tripathi V, Ellis JD, Shen Z, Song DY, Pan Q, Watt AT, Freier SM, Bennett CF, Sharma A, Bubulya PA, Blencowe BJ, Prasanth SG, Prasanth KV (2010) The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation. Mol Cell 39: 925–938
-
(2010)
Mol Cell
, vol.39
, pp. 925-938
-
-
Tripathi, V.1
Ellis, J.D.2
Shen, Z.3
Song, D.Y.4
Pan, Q.5
Watt, A.T.6
Freier, S.M.7
Bennett, C.F.8
Sharma, A.9
Bubulya, P.A.10
Blencowe, B.J.11
Prasanth, S.G.12
Prasanth, K.V.13
-
49
-
-
84905578200
-
PVT1 dependence in cancer with MYC copy-number increase
-
Tseng YY, Moriarity BS, Gong W, Akiyama R, Tiwari A, Kawakami H, Ronning P, Reuland B, Guenther K, Beadnell TC, Essig J, Otto GM, O'Sullivan MG, Largaespada DA, Schwertfeger KL, Marahrens Y, Kawakami Y, Bagchi A (2014) PVT1 dependence in cancer with MYC copy-number increase. Nature 512: 82–86
-
(2014)
Nature
, vol.512
, pp. 82-86
-
-
Tseng, Y.Y.1
Moriarity, B.S.2
Gong, W.3
Akiyama, R.4
Tiwari, A.5
Kawakami, H.6
Ronning, P.7
Reuland, B.8
Guenther, K.9
Beadnell, T.C.10
Essig, J.11
Otto, G.M.12
O'Sullivan, M.G.13
Largaespada, D.A.14
Schwertfeger, K.L.15
Marahrens, Y.16
Kawakami, Y.17
Bagchi, A.18
-
50
-
-
28444448708
-
SVA elements: a hominid-specific retroposon family
-
Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA (2005) SVA elements: a hominid-specific retroposon family. J Mol Biol 354: 994–1007
-
(2005)
J Mol Biol
, vol.354
, pp. 994-1007
-
-
Wang, H.1
Xing, J.2
Grover, D.3
Hedges, D.J.4
Han, K.5
Walker, J.A.6
Batzer, M.A.7
-
51
-
-
0027940238
-
S. pombe mei2+ encodes an RNA-binding protein essential for premeiotic DNA synthesis and meiosis I, which cooperates with a novel RNA species meiRNA
-
Watanabe Y, Yamamoto M (1994) S. pombe mei2+ encodes an RNA-binding protein essential for premeiotic DNA synthesis and meiosis I, which cooperates with a novel RNA species meiRNA. Cell 78: 487–498
-
(1994)
Cell
, vol.78
, pp. 487-498
-
-
Watanabe, Y.1
Yamamoto, M.2
-
52
-
-
84921650701
-
The long noncoding RNAs NEAT1 and MALAT1 bind active chromatin sites
-
West JA, Davis CP, Sunwoo H, Simon MD, Sadreyev RI, Wang PI, Tolstorukov MY, Kingston RE (2014) The long noncoding RNAs NEAT1 and MALAT1 bind active chromatin sites. Mol Cell 55: 791–802
-
(2014)
Mol Cell
, vol.55
, pp. 791-802
-
-
West, J.A.1
Davis, C.P.2
Sunwoo, H.3
Simon, M.D.4
Sadreyev, R.I.5
Wang, P.I.6
Tolstorukov, M.Y.7
Kingston, R.E.8
-
53
-
-
84991256820
-
Structural, super-resolution microscopy analysis of paraspeckle nuclear body organization
-
West JA, Mito M, Kurosaka S, Takumi T, Tanegashima C, Chujo T, Yanaka K, Kingston RE, Hirose T, Bond C, Fox A, Nakagawa S (2016) Structural, super-resolution microscopy analysis of paraspeckle nuclear body organization. J Cell Biol 214: 817–830
-
(2016)
J Cell Biol
, vol.214
, pp. 817-830
-
-
West, J.A.1
Mito, M.2
Kurosaka, S.3
Takumi, T.4
Tanegashima, C.5
Chujo, T.6
Yanaka, K.7
Kingston, R.E.8
Hirose, T.9
Bond, C.10
Fox, A.11
Nakagawa, S.12
-
54
-
-
84995495837
-
Unusual processing generates spa LncRNAs that sequester multiple RNA binding proteins
-
Wu H, Yin QF, Luo Z, Yao RW, Zheng CC, Zhang J, Xiang JF, Yang L, Chen LL (2016) Unusual processing generates spa LncRNAs that sequester multiple RNA binding proteins. Mol Cell 64: 534–548
-
(2016)
Mol Cell
, vol.64
, pp. 534-548
-
-
Wu, H.1
Yin, Q.F.2
Luo, Z.3
Yao, R.W.4
Zheng, C.C.5
Zhang, J.6
Xiang, J.F.7
Yang, L.8
Chen, L.L.9
-
55
-
-
84918836602
-
The building process of the functional paraspeckle with long non-coding RNAs
-
Yamazaki T, Hirose T (2015) The building process of the functional paraspeckle with long non-coding RNAs. Front Biosci (Elite Ed) 7: 1–41
-
(2015)
Front Biosci (Elite Ed)
, vol.7
, pp. 1-41
-
-
Yamazaki, T.1
Hirose, T.2
|