-
1
-
-
60149086351
-
Origin, biogenesis, and activity of plant microRNAs
-
Voinnet O. Origin, biogenesis, and activity of plant microRNAs. Cell. 2009;136:669-87. doi: 10.1016/j.cell.2009.01.046 .
-
(2009)
Cell.
, vol.136
, pp. 669-687
-
-
Voinnet, O.1
-
2
-
-
79955111192
-
Small RNA-mediated epigenetic modifications in plants
-
Simon SA, Meyers BC. Small RNA-mediated epigenetic modifications in plants. Curr Opin Plant Biol. 2011;14:148-55. doi: 10.1016/j.pbi.2010.11.007 .
-
(2011)
Curr Opin Plant Biol.
, vol.14
, pp. 148-155
-
-
Simon, S.A.1
Meyers, B.C.2
-
3
-
-
84881501607
-
miRNA biogenesis and turnover in plants
-
Rogers K, Chen X. miRNA biogenesis and turnover in plants. Cold Spring Harb Symp Quant Biol. 2012;77:183-94. doi: 10.1101/sqb.2013.77.014530 .
-
(2012)
Cold Spring Harb Symp Quant Biol
, vol.77
, pp. 183-194
-
-
Rogers, K.1
Chen, X.2
-
4
-
-
79955379930
-
Vive la difference: biogenesis and evolution of microRNAs in plants and animals
-
Axtell MJ, Westholm JO, Lai EC. Vive la difference: biogenesis and evolution of microRNAs in plants and animals. Genome Biol. 2011;12:221. doi: 10.1186/gb-2011-12-4-221 .
-
(2011)
Genome Biol.
, vol.12
, pp. 221
-
-
Axtell, M.J.1
Westholm, J.O.2
Lai, E.C.3
-
5
-
-
81355123438
-
Evolution of microRNA diversity and regulation in animals
-
Berezikov E. Evolution of microRNA diversity and regulation in animals. Nat Rev Genet. 2011;12:846-60. doi: 10.1038/nrg3079 .
-
(2011)
Nat Rev Genet.
, vol.12
, pp. 846-860
-
-
Berezikov, E.1
-
6
-
-
79953086307
-
Evolution and functional diversification of MIRNA genes
-
Cuperus JT, Fahlgren N, Carrington JC. Evolution and functional diversification of MIRNA genes. Plant Cell. 2011;23:431-42. doi: 10.1105/tpc.110.082784 .
-
(2011)
Plant Cell.
, vol.23
, pp. 431-442
-
-
Cuperus, J.T.1
Fahlgren, N.2
Carrington, J.C.3
-
7
-
-
84883166485
-
Phased, secondary, small interfering RNAs in posttranscriptional regulatory networks
-
Fei Q, Xia R, Meyers BC. Phased, secondary, small interfering RNAs in posttranscriptional regulatory networks. Plant Cell. 2013;25:2400-15. doi: 10.1105/tpc.113.114652 .
-
(2013)
Plant Cell.
, vol.25
, pp. 2400-2415
-
-
Fei, Q.1
Xia, R.2
Meyers, B.C.3
-
8
-
-
84877677064
-
Classification and comparison of small RNAs from plants
-
Axtell MJ. Classification and comparison of small RNAs from plants. Annu Rev Plant Biol. 2013;64:137-59. doi: 10.1146/annurev-arplant-050312-120043 .
-
(2013)
Annu Rev Plant Biol.
, vol.64
, pp. 137-159
-
-
Axtell, M.J.1
-
9
-
-
4644286235
-
SGS3 and SGS2/SDE1/RDR6 are required for juvenile development and the production of trans-acting siRNAs in Arabidopsis
-
Peragine A, Yoshikawa M, Wu G, Albrecht HL, Poethig RS. SGS3 and SGS2/SDE1/RDR6 are required for juvenile development and the production of trans-acting siRNAs in Arabidopsis. Genes Dev. 2004;18:2368-79. doi: 10.1101/gad.1231804 .
-
(2004)
Genes Dev.
, vol.18
, pp. 2368-2379
-
-
Peragine, A.1
Yoshikawa, M.2
Wu, G.3
Albrecht, H.L.4
Poethig, R.S.5
-
10
-
-
4944225347
-
Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs
-
Vazquez F, Vaucheret H, Rajagopalan R, Lepers C, Gasciolli V, Mallory AC, et al. Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs. Mol Cell. 2004;16:69-79. doi: 10.1016/j.molcel.2004.09.028 .
-
(2004)
Mol Cell.
, vol.16
, pp. 69-79
-
-
Vazquez, F.1
Vaucheret, H.2
Rajagopalan, R.3
Lepers, C.4
Gasciolli, V.5
Mallory, A.C.6
-
11
-
-
17444430392
-
microRNA-directed phasing during trans-acting siRNA biogenesis in plants
-
Allen E, Xie Z, Gustafson AM, Carrington JC. microRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell. 2005;121:207-21. doi: 10.1016/j.cell.2005.04.004 .
-
(2005)
Cell
, vol.121
, pp. 207-221
-
-
Allen, E.1
Xie, Z.2
Gustafson, A.M.3
Carrington, J.C.4
-
12
-
-
33750440526
-
A two-hit trigger for siRNA biogenesis in plants
-
Axtell MJ, Jan C, Rajagopalan R, Bartel DP. A two-hit trigger for siRNA biogenesis in plants. Cell. 2006;127:565-77. doi: 10.1016/j.cell.2006.09.032 .
-
(2006)
Cell.
, vol.127
, pp. 565-577
-
-
Axtell, M.J.1
Jan, C.2
Rajagopalan, R.3
Bartel, D.P.4
-
13
-
-
84873033996
-
miR156 and miR390 regulate tasiRNA accumulation and developmental timing in Physcomitrella patens
-
Cho SH, Coruh C, Axtell MJ. miR156 and miR390 regulate tasiRNA accumulation and developmental timing in Physcomitrella patens. Plant Cell. 2012;24:4837-49. doi: 10.1105/tpc.112.103176 .
-
(2012)
Plant Cell
, vol.24
, pp. 4837-4849
-
-
Cho, S.H.1
Coruh, C.2
Axtell, M.J.3
-
14
-
-
84919664945
-
Genome-wide analysis of leafbladeless1-regulated and phased small RNAs underscores the importance of the TAS3 ta-siRNA pathway to maize development
-
Dotto MC, Petsch KA, Aukerman MJ, Beatty M, Hammell M, Timmermans MC. Genome-wide analysis of leafbladeless1-regulated and phased small RNAs underscores the importance of the TAS3 ta-siRNA pathway to maize development. PLoS Genet. 2014;10:e1004826. doi: 10.1371/journal.pgen.1004826 .
-
(2014)
PLoS Genet.
, vol.10
, pp. e1004826
-
-
Dotto, M.C.1
Petsch, K.A.2
Aukerman, M.J.3
Beatty, M.4
Hammell, M.5
Timmermans, M.C.6
-
15
-
-
82955207556
-
microRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
-
Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, et al. microRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs. Genes Dev. 2011;25:2540-53. doi: 10.1101/gad.177527.111 .
-
(2011)
Genes Dev
, vol.25
, pp. 2540-2553
-
-
Zhai, J.1
Jeong, D.H.2
Paoli, E.3
Park, S.4
Rosen, B.D.5
Li, Y.6
-
16
-
-
84961288187
-
An atlas of soybean small RNAs identifies phased siRNAs from hundreds of coding genes
-
Arikit S, Xia R, Kakrana A, Huang K, Zhai J, Yan Z, et al. An atlas of soybean small RNAs identifies phased siRNAs from hundreds of coding genes. Plant Cell. 2014;26:4584-601. doi: 10.1105/tpc.114.131847 .
-
(2014)
Plant Cell.
, vol.26
, pp. 4584-4601
-
-
Arikit, S.1
Xia, R.2
Kakrana, A.3
Huang, K.4
Zhai, J.5
Yan, Z.6
-
17
-
-
84863393281
-
microRNA regulation of plant innate immune receptors
-
Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, et al. microRNA regulation of plant innate immune receptors. Proc Natl Acad Sci. 2012;109:1790-5. doi: 10.1073/pnas.1118282109 .
-
(2012)
Proc Natl Acad Sci
, vol.109
, pp. 1790-1795
-
-
Li, F.1
Pignatta, D.2
Bendix, C.3
Brunkard, J.O.4
Cohn, M.M.5
Tung, J.6
-
18
-
-
84860126087
-
A microRNA superfamily regulates nucleotide binding site-leucine-rich repeats and other mRNAs
-
Shivaprasad PV, Chen HM, Patel K, Bond DM, Santos BA, Baulcombe DC. A microRNA superfamily regulates nucleotide binding site-leucine-rich repeats and other mRNAs. Plant Cell. 2012;24:859-74. doi: 10.1105/tpc.111.095380 .
-
(2012)
Plant Cell.
, vol.24
, pp. 859-874
-
-
Shivaprasad, P.V.1
Chen, H.M.2
Patel, K.3
Bond, D.M.4
Santos, B.A.5
Baulcombe, D.C.6
-
19
-
-
84893780640
-
The Arabidopsis miR472-RDR6 silencing pathway modulates PAMP- and effector-triggered immunity through the post-transcriptional control of disease resistance genes
-
Boccara M, Sarazin A, Thiebeauld O, Jay F, Voinnet O, Navarro L, et al. The Arabidopsis miR472-RDR6 silencing pathway modulates PAMP- and effector-triggered immunity through the post-transcriptional control of disease resistance genes. PLoS Pathog. 2014;10:e1003883. doi: 10.1371/journal.ppat.1003883 .
-
(2014)
PLoS Pathog.
, vol.10
, pp. e1003883
-
-
Boccara, M.1
Sarazin, A.2
Thiebeauld, O.3
Jay, F.4
Voinnet, O.5
Navarro, L.6
-
20
-
-
84862232060
-
Apple miRNAs and tasiRNAs with novel regulatory networks
-
Xia R, Zhu H, An YQ, Beers EP, Liu Z. Apple miRNAs and tasiRNAs with novel regulatory networks. Genome Biol. 2012;13:R47. doi: 10.1186/gb-2012-13-6-r47 .
-
(2012)
Genome Biol.
, vol.13
, pp. R47
-
-
Xia, R.1
Zhu, H.2
An, Y.Q.3
Beers, E.P.4
Liu, Z.5
-
21
-
-
84865097020
-
Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
-
Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, et al. Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs. BMC Plant Biol. 2012;12:149. doi: 10.1186/1471-2229-12-149 .
-
(2012)
BMC Plant Biol.
, vol.12
, pp. 149
-
-
Zhu, H.1
Xia, R.2
Zhao, B.3
An, Y.Q.4
Dardick, C.D.5
Callahan, A.M.6
-
22
-
-
34250717043
-
Genome-wide analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 pathway in Arabidopsis reveals dependency on miRNA- and tasiRNA-directed targeting
-
Howell MD, Fahlgren N, Chapman EJ, Cumbie JS, Sullivan CM, Givan SA, et al. Genome-wide analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 pathway in Arabidopsis reveals dependency on miRNA- and tasiRNA-directed targeting. Plant Cell. 2007;19:926-42. doi: 10.1105/tpc.107 .
-
(2007)
Plant Cell.
, vol.19
, pp. 926-942
-
-
Howell, M.D.1
Fahlgren, N.2
Chapman, E.J.3
Cumbie, J.S.4
Sullivan, C.M.5
Givan, S.A.6
-
23
-
-
84879466274
-
microRNA superfamilies descended from miR390 and their roles in secondary small interfering RNA biogenesis in eudicots
-
Xia R, Meyers BC, Liu Z, Beers EP, Ye S, Liu Z. microRNA superfamilies descended from miR390 and their roles in secondary small interfering RNA biogenesis in eudicots. Plant Cell. 2013;25:1555-72. doi: 10.1105/tpc.113.110957 .
-
(2013)
Plant Cell
, vol.25
, pp. 1555-1572
-
-
Xia, R.1
Meyers, B.C.2
Liu, Z.3
Beers, E.P.4
Ye, S.5
Liu, Z.6
-
24
-
-
33847652140
-
Bioinformatic prediction and experimental validation of a microRNA-directed tandem trans-acting siRNA cascade in Arabidopsis
-
Chen HM, Li YH, Wu SH. Bioinformatic prediction and experimental validation of a microRNA-directed tandem trans-acting siRNA cascade in Arabidopsis. Proc Natl Acad Sci U S A. 2007;104:3318-23. doi: 10.1073/pnas.0611119104 .
-
(2007)
Proc Natl Acad Sci U S A.
, vol.104
, pp. 3318-3323
-
-
Chen, H.M.1
Li, Y.H.2
Wu, S.H.3
-
25
-
-
80053583176
-
miR393 and secondary siRNAs regulate expression of the TIR1/AFB2 auxin receptor clade and auxin-related development of Arabidopsis leaves
-
Si-Ammour A, Windels D, Arn-bouldoires E, Kutter C, Ailhas J, Meins F, et al. miR393 and secondary siRNAs regulate expression of the TIR1/AFB2 auxin receptor clade and auxin-related development of Arabidopsis leaves. Plant Physiol. 2011;157:683-91. doi: 10.1104/pp.111.180083 .
-
(2011)
Plant Physiol
, vol.157
, pp. 683-691
-
-
Si-Ammour, A.1
Windels, D.2
Arn-bouldoires, E.3
Kutter, C.4
Ailhas, J.5
Meins, F.6
-
26
-
-
80055000264
-
Function and evolution of a microRNA that regulates a Ca2+-ATPase and triggers the formation of phased small interfering RNAs in tomato reproductive growth
-
Wang Y, Itaya A, Zhong X, Wu Y, Zhang J, van der Knaap E, et al. Function and evolution of a microRNA that regulates a Ca2+-ATPase and triggers the formation of phased small interfering RNAs in tomato reproductive growth. Plant Cell. 2011;23:3185-203. doi: 10.1105/tpc.111.088013 .
-
(2011)
Plant Cell.
, vol.23
, pp. 3185-3203
-
-
Wang, Y.1
Itaya, A.2
Zhong, X.3
Wu, Y.4
Zhang, J.5
Knaap, E.6
-
27
-
-
34547668337
-
Common functions for diverse small RNAs of land plants
-
Axtell MJ, Snyder JA, Bartel DP. Common functions for diverse small RNAs of land plants. Plant Cell. 2007;19:1750-69. doi: 10.1105/tpc.107.051706 .
-
(2007)
Plant Cell.
, vol.19
, pp. 1750-1769
-
-
Axtell, M.J.1
Snyder, J.A.2
Bartel, D.P.3
-
28
-
-
77953214518
-
MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
-
Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, et al. MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana. Plant Cell. 2010;22:1074-89. doi: 10.1105/tpc.110 .
-
(2010)
Plant Cell.
, vol.22
, pp. 1074-1089
-
-
Fahlgren, N.1
Jogdeo, S.2
Kasschau, K.D.3
Sullivan, C.M.4
Chapman, E.J.5
Laubinger, S.6
-
29
-
-
77950367420
-
Arabidopsis RNA-dependent RNA polymerases and dicer-like proteins in antiviral defense and small interfering RNA biogenesis during Turnip mosaic virus infection
-
Garcia-Ruiz H, Takeda A, Chapman EJ, Sullivan EM, Fahlgren N, Brempelis KJ, et al. Arabidopsis RNA-dependent RNA polymerases and dicer-like proteins in antiviral defense and small interfering RNA biogenesis during Turnip mosaic virus infection. Plant Cell. 2010;22:481-96. doi: 10.1105/tpc.109.073056 .
-
(2010)
Plant Cell.
, vol.22
, pp. 481-496
-
-
Garcia-Ruiz, H.1
Takeda, A.2
Chapman, E.J.3
Sullivan, E.M.4
Fahlgren, N.5
Brempelis, K.J.6
-
30
-
-
77950346035
-
Global epigenetic and transcriptional trends among two rice subspecies and their reciprocal hybrids
-
He G, Zhu X, Elling AA, Chen L, Wang X, Guo L, et al. Global epigenetic and transcriptional trends among two rice subspecies and their reciprocal hybrids. Plant Cell. 2010;22:17-33. doi: 10.1105/tpc.109.072041 .
-
(2010)
Plant Cell.
, vol.22
, pp. 17-33
-
-
He, G.1
Zhu, X.2
Elling, A.A.3
Chen, L.4
Wang, X.5
Guo, L.6
-
31
-
-
80052339278
-
Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors
-
Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, et al. Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors. PLoS Pathog. 2011;7:e1002176. doi: 10.1371/journal.ppat.1002176 .
-
(2011)
PLoS Pathog.
, vol.7
, pp. e1002176
-
-
Du, P.1
Wu, J.2
Zhang, J.3
Zhao, S.4
Zheng, H.5
Gao, G.6
-
32
-
-
84867402407
-
Genomic dissection of small RNAs in wild rice (Oryza rufipogon): lessons for rice domestication
-
Wang Y, Bai X, Yan C, Gui Y, Wei X, Zhu QH, et al. Genomic dissection of small RNAs in wild rice (Oryza rufipogon): lessons for rice domestication. New Phytol. 2012;196:914-25. doi: 10.1111/j.1469-8137.2012.04304.x .
-
(2012)
New Phytol.
, vol.196
, pp. 914-925
-
-
Wang, Y.1
Bai, X.2
Yan, C.3
Gui, Y.4
Wei, X.5
Zhu, Q.H.6
-
33
-
-
84899487011
-
Sample sequencing of vascular plants demonstrates widespread conservation and divergence of microRNAs
-
Montes RA, de Fatima R-CF, De Paoli E, Accerbi M, Rymarquis LA, Mahalingam G, et al. Sample sequencing of vascular plants demonstrates widespread conservation and divergence of microRNAs. Nat Commun. 2014;5:3722. doi: 10.1038/ncomms4722 .
-
(2014)
Nat Commun.
, vol.5
, pp. 3722
-
-
Montes, R.A.1
Fatima, R.-C.F.2
Paoli, E.3
Accerbi, M.4
Rymarquis, L.A.5
Mahalingam, G.6
-
34
-
-
84930647139
-
-
Plant Phased Secondary siRNA Database. [ http://bioinfo.bti.cornell.edu/tool/phasiRNA ].
-
-
-
-
35
-
-
84887025720
-
Trans-acting small interfering RNA4: key to nutraceutical synthesis in grape development?
-
Rock CD. Trans-acting small interfering RNA4: key to nutraceutical synthesis in grape development? Trends Plant Sci. 2013;18:601-10. doi: 10.1016/j.tplants.2013.07.006 .
-
(2013)
Trends Plant Sci.
, vol.18
, pp. 601-610
-
-
Rock, C.D.1
-
36
-
-
84892773410
-
miR828 and miR858 regulate homoeologous MYB2 gene functions in Arabidopsis trichome and cotton fibre development
-
Guan X, Pang M, Nah G, Shi X, Ye W, Stelly DM, et al. miR828 and miR858 regulate homoeologous MYB2 gene functions in Arabidopsis trichome and cotton fibre development. Nat Commun. 2014;5:3050. doi: 10.1038/ncomms4050 .
-
(2014)
Nat Commun
, vol.5
, pp. 3050
-
-
Guan, X.1
Pang, M.2
Nah, G.3
Shi, X.4
Ye, W.5
Stelly, D.M.6
-
37
-
-
84865425907
-
An autoregulatory feedback loop involving PAP1 and TAS4 in response to sugars in Arabidopsis
-
Luo QJ, Mittal A, Jia F, Rock CD. An autoregulatory feedback loop involving PAP1 and TAS4 in response to sugars in Arabidopsis. Plant Mol Biol. 2012;80:117-29. doi: 10.1007/s11103-011-9778-9 .
-
(2012)
Plant Mol Biol.
, vol.80
, pp. 117-129
-
-
Luo, Q.J.1
Mittal, A.2
Jia, F.3
Rock, C.D.4
-
38
-
-
84855481496
-
Sculpting the maturation, softening and ethylene pathway: the influences of microRNAs on tomato fruits
-
Zuo J, Zhu B, Fu D, Zhu Y, Ma Y, Chi L, et al. Sculpting the maturation, softening and ethylene pathway: the influences of microRNAs on tomato fruits. BMC Genomics. 2012;13:7. doi: 10.1186/1471-2164-13-7 .
-
(2012)
BMC Genomics.
, vol.13
, pp. 7
-
-
Zuo, J.1
Zhu, B.2
Fu, D.3
Zhu, Y.4
Ma, Y.5
Chi, L.6
-
39
-
-
0037653656
-
Fitness costs of R-gene-mediated resistance in Arabidopsis thaliana
-
Tian D, Traw MB, Chen JQ, Kreitman M, Bergelson J. Fitness costs of R-gene-mediated resistance in Arabidopsis thaliana. Nature. 2003;423:74-7. doi: 10.1038/nature01588 .
-
(2003)
Nature.
, vol.423
, pp. 74-77
-
-
Tian, D.1
Traw, M.B.2
Chen, J.Q.3
Kreitman, M.4
Bergelson, J.5
-
40
-
-
24944491201
-
A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis
-
Yoshikawa M, Peragine A, Park MY, Poethig RS. A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis. Genes Dev. 2005;19:2164-75. doi: 10.1101/gad.1352605 .
-
(2005)
Genes Dev.
, vol.19
, pp. 2164-2175
-
-
Yoshikawa, M.1
Peragine, A.2
Park, M.Y.3
Poethig, R.S.4
-
41
-
-
84930623701
-
-
Phytozome. [ http://www.phytozome.net ].
-
-
-
-
42
-
-
84930670840
-
-
Sol Genomics Network. [ http://solgenomics.net ].
-
-
-
-
43
-
-
84930683286
-
-
Amborella Genome Database. [ http://www.amborella.org ].
-
-
-
-
44
-
-
84873587727
-
Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening
-
Zhong S, Fei Z, Chen YR, Zheng Y, Huang M, Vrebalov J, et al. Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening. Nat Biotechnol. 2013;31:154-9. doi: 10.1038/nbt.2462 .
-
(2013)
Nat Biotechnol.
, vol.31
, pp. 154-159
-
-
Zhong, S.1
Fei, Z.2
Chen, Y.R.3
Zheng, Y.4
Huang, M.5
Vrebalov, J.6
-
45
-
-
84924308731
-
Spatiotemporally dynamic, cell-type-dependent premeiotic and meiotic phasiRNAs in maize anthers
-
Zhai J, Zhang H, Arikit S, Huang K, Nan GL, Walbot V, et al. Spatiotemporally dynamic, cell-type-dependent premeiotic and meiotic phasiRNAs in maize anthers. Proc Natl Acad Sci U S A. 2015;112:3146-51. doi: 10.1073/pnas.1418918112 .
-
(2015)
Proc Natl Acad Sci U S A.
, vol.112
, pp. 3146-3151
-
-
Zhai, J.1
Zhang, H.2
Arikit, S.3
Huang, K.4
Nan, G.L.5
Walbot, V.6
-
46
-
-
45549091152
-
Association of the transcriptional response of soybean plants with soybean mosaic virus systemic infection
-
Babu M, Gagarinova AG, Brandle JE, Wang A. Association of the transcriptional response of soybean plants with soybean mosaic virus systemic infection. J Gen Virol. 2008;89:1069-80. doi: 10.1099/vir.0.83531-0 .
-
(2008)
J Gen Virol.
, vol.89
, pp. 1069-1080
-
-
Babu, M.1
Gagarinova, A.G.2
Brandle, J.E.3
Wang, A.4
-
47
-
-
72949087809
-
Comparative analysis of expression profiles in shoots and roots of tomato systemically infected by Tomato spotted wilt virus reveals organ-specific transcriptional responses
-
Catoni M, Miozzi L, Fiorilli V, Lanfranco L, Accotto GP. Comparative analysis of expression profiles in shoots and roots of tomato systemically infected by Tomato spotted wilt virus reveals organ-specific transcriptional responses. Mol Plant Microbe Interact. 2009;22:1504-13. doi: 10.1094/MPMI-22-12-1504 .
-
(2009)
Mol Plant Microbe Interact.
, vol.22
, pp. 1504-1513
-
-
Catoni, M.1
Miozzi, L.2
Fiorilli, V.3
Lanfranco, L.4
Accotto, G.P.5
-
48
-
-
79956003318
-
Differential tomato transcriptomic responses induced by Pepino mosaic virus isolates with differential aggressiveness
-
Hanssen IM, van Esse HP, Ballester AR, Hogewoning SW, Parra NO, Paeleman A, et al. Differential tomato transcriptomic responses induced by Pepino mosaic virus isolates with differential aggressiveness. Plant Physiol. 2011;156:301-18. doi: 10.1104/pp. 111.173906 .
-
(2011)
Plant Physiol.
, vol.156
, pp. 301-318
-
-
Hanssen, I.M.1
Esse, H.P.2
Ballester, A.R.3
Hogewoning, S.W.4
Parra, N.O.5
Paeleman, A.6
-
49
-
-
84865515446
-
Transcriptome analysis of Nicotiana tabacum infected by Cucumber mosaic virus during systemic symptom development
-
Lu J, Du ZX, Kong J, Chen LN, Qiu YH, Li GF, et al. Transcriptome analysis of Nicotiana tabacum infected by Cucumber mosaic virus during systemic symptom development. PLoS One. 2012;7:e43447. doi: 10.1371/journal.pone.0043447 .
-
(2012)
PLoS One.
, vol.7
, pp. e43447
-
-
Lu, J.1
Du, Z.X.2
Kong, J.3
Chen, L.N.4
Qiu, Y.H.5
Li, G.F.6
-
50
-
-
84894073264
-
Comparative transcriptome profiling of a resistant vs. susceptible tomato (Solanum lycopersicum) cultivar in response to infection by Tomato yellow leaf curl virus
-
Chen T, Lv Y, Zhao T, Li N, Yang Y, Yu W, et al. Comparative transcriptome profiling of a resistant vs. susceptible tomato (Solanum lycopersicum) cultivar in response to infection by Tomato yellow leaf curl virus. PLoS One. 2013;8:e80816. doi: 10.1371/journal.pone.0080816 .
-
(2013)
PLoS One.
, vol.8
, pp. e80816
-
-
Chen, T.1
Lv, Y.2
Zhao, T.3
Li, N.4
Yang, Y.5
Yu, W.6
-
51
-
-
34347355440
-
miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
-
Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC. miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii. Nature. 2007;447:1126-9. doi: 10.1038/nature05903 .
-
(2007)
Nature
, vol.447
, pp. 1126-1129
-
-
Molnar, A.1
Schwach, F.2
Studholme, D.J.3
Thuenemann, E.C.4
Baulcombe, D.C.5
-
52
-
-
34249093687
-
A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii
-
Zhao T, Li G, Mi S, Li S, Hannon GJ, Wang XJ, et al. A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii. Genes Dev. 2007;21:1190-203. doi: 10.1101/gad.1543507 .
-
(2007)
Genes Dev.
, vol.21
, pp. 1190-1203
-
-
Zhao, T.1
Li, G.2
Mi, S.3
Li, S.4
Hannon, G.J.5
Wang, X.J.6
-
53
-
-
52049104255
-
Diversification of the core RNA interference machinery in Chlamydomonas reinhardtii and the role of DCL1 in transposon silencing
-
Casas-Mollano JA, Rohr J, Kim EJ, Balassa E, van Dijk K, Cerutti H. Diversification of the core RNA interference machinery in Chlamydomonas reinhardtii and the role of DCL1 in transposon silencing. Genetics. 2008;179:69-81. doi: 10.1534/genetics.107.086546 .
-
(2008)
Genetics.
, vol.179
, pp. 69-81
-
-
Casas-Mollano, J.A.1
Rohr, J.2
Kim, E.J.3
Balassa, E.4
Dijk, K.5
Cerutti, H.6
-
54
-
-
27944503390
-
REM1, a new type of long terminal repeat retrotransposon in Chlamydomonas reinhardtii
-
Perez-Alegre M, Dubus A, Fernandez E. REM1, a new type of long terminal repeat retrotransposon in Chlamydomonas reinhardtii. Mol Cell Biol. 2005;25:10628-38. doi: 10.1128/MCB.25.23.10628-10638.2005 .
-
(2005)
Mol Cell Biol.
, vol.25
, pp. 10628-10638
-
-
Perez-Alegre, M.1
Dubus, A.2
Fernandez, E.3
-
55
-
-
84922394706
-
sPARTA: a parallelized pipeline for integrated analysis of plant miRNA and cleaved mRNA data sets, including new miRNA target-identification software
-
Kakrana A, Hammond R, Patel P, Nakano M, Meyers BC. sPARTA: a parallelized pipeline for integrated analysis of plant miRNA and cleaved mRNA data sets, including new miRNA target-identification software. Nucleic Acids Res. 2015;42:e139. doi: 10.1093/nar/gku693 .
-
(2015)
Nucleic Acids Res.
, vol.42
, pp. e139
-
-
Kakrana, A.1
Hammond, R.2
Patel, P.3
Nakano, M.4
Meyers, B.C.5
-
56
-
-
84870515741
-
Dicer-like2 activity in Physcomitrella patens Dicer-like4 mutants causes severe developmental dysfunction and sterility
-
Arif MA, Fattash I, Ma Z, Cho SH, Beike AK, Reski R, et al. Dicer-like2 activity in Physcomitrella patens Dicer-like4 mutants causes severe developmental dysfunction and sterility. Mol Plant. 2012;5:1281-94. doi: 10.1093/mp/sss036 .
-
(2012)
Mol Plant.
, vol.5
, pp. 1281-1294
-
-
Arif, M.A.1
Fattash, I.2
Ma, Z.3
Cho, S.H.4
Beike, A.K.5
Reski, R.6
-
57
-
-
80052388966
-
RNA-mediated silencing in Algae: biological roles and tools for analysis of gene function
-
Cerutti H, Ma X, Msanne J, Repas T. RNA-mediated silencing in Algae: biological roles and tools for analysis of gene function. Eukaryot Cell. 2011;10:1164-72. doi: 10.1128/EC.05106-11 .
-
(2011)
Eukaryot Cell.
, vol.10
, pp. 1164-1172
-
-
Cerutti, H.1
Ma, X.2
Msanne, J.3
Repas, T.4
-
58
-
-
55249089227
-
Genome-wide identification, organization and phylogenetic analysis of Dicer-like, Argonaute and RNA-dependent RNA Polymerase gene families and their expression analysis during reproductive development and stress in rice
-
Kapoor M, Arora R, Lama T, Nijhawan A, Khurana JP, Tyagi AK, et al. Genome-wide identification, organization and phylogenetic analysis of Dicer-like, Argonaute and RNA-dependent RNA Polymerase gene families and their expression analysis during reproductive development and stress in rice. BMC Genomics. 2008;9:451. doi: 10.1186/1471-2164-9-451 .
-
(2008)
BMC Genomics
, vol.9
, pp. 451
-
-
Kapoor, M.1
Arora, R.2
Lama, T.3
Nijhawan, A.4
Khurana, J.P.5
Tyagi, A.K.6
-
59
-
-
79958753423
-
Identification and characterization of Dicer-like, Argonaute and RNA-dependent RNA polymerase gene families in maize
-
Qian Y, Cheng Y, Cheng X, Jiang H, Zhu S, Cheng B. Identification and characterization of Dicer-like, Argonaute and RNA-dependent RNA polymerase gene families in maize. Plant Cell Rep. 2011;30:1347-63. doi: 10.1007/s00299-011-1046-6 .
-
(2011)
Plant Cell Rep.
, vol.30
, pp. 1347-1363
-
-
Qian, Y.1
Cheng, Y.2
Cheng, X.3
Jiang, H.4
Zhu, S.5
Cheng, B.6
-
60
-
-
84860552254
-
Genome-wide identification of Dicer-like, Argonaute and RNA-dependent RNA polymerase gene families and their expression analyses in response to viral infection and abiotic stresses in Solanum lycopersicum
-
Bai M, Yang GS, Chen WT, Mao ZC, Kang HX, Chen GH, et al. Genome-wide identification of Dicer-like, Argonaute and RNA-dependent RNA polymerase gene families and their expression analyses in response to viral infection and abiotic stresses in Solanum lycopersicum. Gene. 2012;501:52-62. doi: 10.1016/j.gene.2012.02.009 .
-
(2012)
Gene.
, vol.501
, pp. 52-62
-
-
Bai, M.1
Yang, G.S.2
Chen, W.T.3
Mao, Z.C.4
Kang, H.X.5
Chen, G.H.6
-
61
-
-
84930638367
-
-
The Comparative Sequencing of Plant Small RNAs website. [ http://smallRNA.udel.edu ].
-
-
-
-
62
-
-
84930668436
-
-
Gene Expression Omnibus
-
National Center for Biotechnology Information, Gene Expression Omnibus. [ http://www.ncbi.nlm.nih.gov/geo ].
-
-
-
-
63
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 2009;10:R25. doi: 10.1186/gb-2009-10-3-r25 .
-
(2009)
Genome Biol.
, vol.10
, pp. R25
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
64
-
-
70350123865
-
Distinct extremely abundant siRNAs associated with cosuppression in petunia
-
De Paoli E, Dorantes-Acosta A, Zhai J, Accerbi M, Jeong DH, Park S, et al. Distinct extremely abundant siRNAs associated with cosuppression in petunia. RNA. 2009;15:1965-70. doi: 10.1261/rna.1706109 .
-
(2009)
RNA.
, vol.15
, pp. 1965-1970
-
-
Paoli, E.1
Dorantes-Acosta, A.2
Zhai, J.3
Accerbi, M.4
Jeong, D.H.5
Park, S.6
-
65
-
-
68149119262
-
Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
-
Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, et al. Clusters and superclusters of phased small RNAs in the developing inflorescence of rice. Genome Res. 2009;19:1429-40. doi: 10.1101/gr.089854.108 .
-
(2009)
Genome Res.
, vol.19
, pp. 1429-1440
-
-
Johnson, C.1
Kasprzewska, A.2
Tennessen, K.3
Fernandes, J.4
Nan, G.L.5
Walbot, V.6
-
66
-
-
0043123153
-
Vienna RNA, secondary structure server
-
Hofacker IL. Vienna RNA, secondary structure server. Nucleic Acids Res. 2003;31:3429-31. doi: 10.1093/nar/gkg599 .
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3429-3431
-
-
Hofacker, I.L.1
-
67
-
-
84930659744
-
-
miRBase. [ http://mirbase.org ].
-
-
-
|