-
1
-
-
55449131096
-
Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes
-
Wierzbicki A.T., Haag J.R., Pikaard C.S. Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes. Cell 2008, 135:635-648.
-
(2008)
Cell
, vol.135
, pp. 635-648
-
-
Wierzbicki, A.T.1
Haag, J.R.2
Pikaard, C.S.3
-
2
-
-
34248340993
-
Role of RNA polymerase IV in plant small RNA metabolism
-
Zhang X., Henderson I.R., Lu C., Green P.J., Jacobsen S.E. Role of RNA polymerase IV in plant small RNA metabolism. Proc Natl Acad Sci U S A 2007, 104:4536-4541.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 4536-4541
-
-
Zhang, X.1
Henderson, I.R.2
Lu, C.3
Green, P.J.4
Jacobsen, S.E.5
-
3
-
-
33749404806
-
MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
-
Lu C., Kulkarni K., Souret F.F., MuthuValliappan R., Tej S.S., Poethig R.S., Henderson I.R., Jacobsen S.E., Wang W., Green P.J., et al. MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant. Genome Res 2006, 16:1276-1288.
-
(2006)
Genome Res
, vol.16
, pp. 1276-1288
-
-
Lu, C.1
Kulkarni, K.2
Souret, F.F.3
MuthuValliappan, R.4
Tej, S.S.5
Poethig, R.S.6
Henderson, I.R.7
Jacobsen, S.E.8
Wang, W.9
Green, P.J.10
-
4
-
-
19344374219
-
Genetic and functional diversification of small RNA pathways in plants
-
Xie Z., Johansen L.K., Gustafson A.M., Kasschau K.D., Lellis A.D., Zilberman D., Jacobsen S.E., Carrington J.C. Genetic and functional diversification of small RNA pathways in plants. PLoS Biol 2004, 2:E104.
-
(2004)
PLoS Biol
, vol.2
-
-
Xie, Z.1
Johansen, L.K.2
Gustafson, A.M.3
Kasschau, K.D.4
Lellis, A.D.5
Zilberman, D.6
Jacobsen, S.E.7
Carrington, J.C.8
-
5
-
-
33947236065
-
Genome-wide profiling and analysis of Arabidopsis siRNAs
-
Kasschau K.D., Fahlgren N., Chapman E.J., Sullivan C.M., Cumbie J.S., Givan S.A., Carrington J.C. Genome-wide profiling and analysis of Arabidopsis siRNAs. PLoS Biol 2007, 5:e57.
-
(2007)
PLoS Biol
, vol.5
-
-
Kasschau, K.D.1
Fahlgren, N.2
Chapman, E.J.3
Sullivan, C.M.4
Cumbie, J.S.5
Givan, S.A.6
Carrington, J.C.7
-
6
-
-
41349114789
-
Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide
-
Mi S., Cai T., Hu Y., Chen Y., Hodges E., Ni F., Wu L., Li S., Zhou H., Long C., et al. Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide. Cell 2008, 133:116-127.
-
(2008)
Cell
, vol.133
, pp. 116-127
-
-
Mi, S.1
Cai, T.2
Hu, Y.3
Chen, Y.4
Hodges, E.5
Ni, F.6
Wu, L.7
Li, S.8
Zhou, H.9
Long, C.10
-
7
-
-
33947586544
-
Role of Arabidopsis AGO6 in siRNA accumulation, DNA methylation and transcriptional gene silencing
-
Zheng X., Zhu J., Kapoor A., Zhu J.K. Role of Arabidopsis AGO6 in siRNA accumulation, DNA methylation and transcriptional gene silencing. EMBO J 2007, 26:1691-1701.
-
(2007)
EMBO J
, vol.26
, pp. 1691-1701
-
-
Zheng, X.1
Zhu, J.2
Kapoor, A.3
Zhu, J.K.4
-
8
-
-
33745690105
-
The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center
-
Pontes O., Li C.F., Nunes P.C., Haag J., Ream T., Vitins A., Jacobsen S.E., Pikaard C.S. The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center. Cell 2006, 126:79-92.
-
(2006)
Cell
, vol.126
, pp. 79-92
-
-
Pontes, O.1
Li, C.F.2
Nunes, P.C.3
Haag, J.4
Ream, T.5
Vitins, A.6
Jacobsen, S.E.7
Pikaard, C.S.8
-
9
-
-
33750435234
-
Distinct catalytic and non-catalytic roles of ARGONAUTE4 in RNA-directed DNA methylation
-
Qi Y., He X., Wang X.J., Kohany O., Jurka J., Hannon G.J. Distinct catalytic and non-catalytic roles of ARGONAUTE4 in RNA-directed DNA methylation. Nature 2006, 443:1008-1012.
-
(2006)
Nature
, vol.443
, pp. 1008-1012
-
-
Qi, Y.1
He, X.2
Wang, X.J.3
Kohany, O.4
Jurka, J.5
Hannon, G.J.6
-
10
-
-
33646137364
-
The diversity of RNA silencing pathways in plants
-
Brodersen P., Voinnet O. The diversity of RNA silencing pathways in plants. Trends Genet 2006, 22:268-280.
-
(2006)
Trends Genet
, vol.22
, pp. 268-280
-
-
Brodersen, P.1
Voinnet, O.2
-
11
-
-
14844302397
-
Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation
-
Onodera Y., Haag J.R., Ream T., Nunes P.C., Pontes O., Pikaard C.S. Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation. Cell 2005, 120:613-622.
-
(2005)
Cell
, vol.120
, pp. 613-622
-
-
Onodera, Y.1
Haag, J.R.2
Ream, T.3
Nunes, P.C.4
Pontes, O.5
Pikaard, C.S.6
-
12
-
-
77952090735
-
An RNA polymerase II- and AGO4-associated protein acts in RNA-directed DNA methylation
-
Gao Z., Liu H.L., Daxinger L., Pontes O., He X., Qian W., Lin H., Xie M., Lorkovic Z.J., Zhang S., et al. An RNA polymerase II- and AGO4-associated protein acts in RNA-directed DNA methylation. Nature 2010, 465:106-109.
-
(2010)
Nature
, vol.465
, pp. 106-109
-
-
Gao, Z.1
Liu, H.L.2
Daxinger, L.3
Pontes, O.4
He, X.5
Qian, W.6
Lin, H.7
Xie, M.8
Lorkovic, Z.J.9
Zhang, S.10
-
13
-
-
46149091475
-
Roles of RNA polymerase IV in gene silencing
-
Pikaard C.S., Haag J.R., Ream T., Wierzbicki A.T. Roles of RNA polymerase IV in gene silencing. Trends Plant Sci 2008, 13:390-397.
-
(2008)
Trends Plant Sci
, vol.13
, pp. 390-397
-
-
Pikaard, C.S.1
Haag, J.R.2
Ream, T.3
Wierzbicki, A.T.4
-
14
-
-
34347382532
-
An SNF2 protein associated with nuclear RNA silencing and the spread of a silencing signal between cells in Arabidopsis
-
Smith L.M., Pontes O., Searle I., Yelina N., Yousafzai F.K., Herr A.J., Pikaard C.S., Baulcombe D.C. An SNF2 protein associated with nuclear RNA silencing and the spread of a silencing signal between cells in Arabidopsis. Plant Cell 2007, 19:1507-1521.
-
(2007)
Plant Cell
, vol.19
, pp. 1507-1521
-
-
Smith, L.M.1
Pontes, O.2
Searle, I.3
Yelina, N.4
Yousafzai, F.K.5
Herr, A.J.6
Pikaard, C.S.7
Baulcombe, D.C.8
-
15
-
-
23944483216
-
Partially redundant functions of Arabidopsis DICER-like enzymes and a role for DCL4 in producing trans-acting siRNAs
-
Gasciolli V., Mallory A.C., Bartel D.P., Vaucheret H. Partially redundant functions of Arabidopsis DICER-like enzymes and a role for DCL4 in producing trans-acting siRNAs. Curr Biol 2005, 15:1494-1500.
-
(2005)
Curr Biol
, vol.15
, pp. 1494-1500
-
-
Gasciolli, V.1
Mallory, A.C.2
Bartel, D.P.3
Vaucheret, H.4
-
16
-
-
34249810892
-
Argonaute proteins: mediators of RNA silencing
-
Peters L., Meister G. Argonaute proteins: mediators of RNA silencing. Mol Cell 2007, 26:611-623.
-
(2007)
Mol Cell
, vol.26
, pp. 611-623
-
-
Peters, L.1
Meister, G.2
-
17
-
-
77953129746
-
A protein complex required for polymerase V transcripts and RNA-directed DNA methylation in Arabidopsis
-
Law J.A., Ausin I., Johnson L.M., Vashisht A.A., Zhu J.K., Wohlschlegel J.A., Jacobsen S.E. A protein complex required for polymerase V transcripts and RNA-directed DNA methylation in Arabidopsis. Curr Biol 2010, 20:951-956.
-
(2010)
Curr Biol
, vol.20
, pp. 951-956
-
-
Law, J.A.1
Ausin, I.2
Johnson, L.M.3
Vashisht, A.A.4
Zhu, J.K.5
Wohlschlegel, J.A.6
Jacobsen, S.E.7
-
18
-
-
2342505910
-
Involvement of putative SNF2 chromatin remodeling protein DRD1 in RNA-directed DNA methylation
-
Kanno T., Mette M.F., Kreil D.P., Aufsatz W., Matzke M., Matzke A.J. Involvement of putative SNF2 chromatin remodeling protein DRD1 in RNA-directed DNA methylation. Curr Biol 2004, 14:801-805.
-
(2004)
Curr Biol
, vol.14
, pp. 801-805
-
-
Kanno, T.1
Mette, M.F.2
Kreil, D.P.3
Aufsatz, W.4
Matzke, M.5
Matzke, A.J.6
-
19
-
-
42649089072
-
A structural-maintenance-of-chromosomes hinge domain-containing protein is required for RNA-directed DNA methylation
-
Kanno T., Bucher E., Daxinger L., Huettel B., Bohmdorfer G., Gregor W., Kreil D.P., Matzke M., Matzke A.J. A structural-maintenance-of-chromosomes hinge domain-containing protein is required for RNA-directed DNA methylation. Nat Genet 2008, 40:670-675.
-
(2008)
Nat Genet
, vol.40
, pp. 670-675
-
-
Kanno, T.1
Bucher, E.2
Daxinger, L.3
Huettel, B.4
Bohmdorfer, G.5
Gregor, W.6
Kreil, D.P.7
Matzke, M.8
Matzke, A.J.9
-
20
-
-
67349112845
-
RNA polymerase V transcription guides ARGONAUTE4 to chromatin
-
Wierzbicki A.T., Ream T.S., Haag J.R., Pikaard C.S. RNA polymerase V transcription guides ARGONAUTE4 to chromatin. Nat Genet 2009, 41:630-634.
-
(2009)
Nat Genet
, vol.41
, pp. 630-634
-
-
Wierzbicki, A.T.1
Ream, T.S.2
Haag, J.R.3
Pikaard, C.S.4
-
21
-
-
33644858548
-
Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis
-
Tran R.K., Zilberman D., de Bustos C., Ditt R.F., Henikoff J.G., Lindroth A.M., Delrow J., Boyle T., Kwong S., Bryson T.D., et al. Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis. Genome Biol 2005, 6:R90.
-
(2005)
Genome Biol
, vol.6
-
-
Tran, R.K.1
Zilberman, D.2
de Bustos, C.3
Ditt, R.F.4
Henikoff, J.G.5
Lindroth, A.M.6
Delrow, J.7
Boyle, T.8
Kwong, S.9
Bryson, T.D.10
-
22
-
-
65249148019
-
RNA-mediated chromatin-based silencing in plants
-
Matzke M., Kanno T., Daxinger L., Huettel B., Matzke A.J. RNA-mediated chromatin-based silencing in plants. Curr Opin Cell Biol 2009, 21:367-376.
-
(2009)
Curr Opin Cell Biol
, vol.21
, pp. 367-376
-
-
Matzke, M.1
Kanno, T.2
Daxinger, L.3
Huettel, B.4
Matzke, A.J.5
-
23
-
-
58149347080
-
A stepwise pathway for biogenesis of 24-nt secondary siRNAs and spreading of DNA methylation
-
Daxinger L., Kanno T., Bucher E., van der Winden J., Naumann U., Matzke A.J., Matzke M. A stepwise pathway for biogenesis of 24-nt secondary siRNAs and spreading of DNA methylation. EMBO J 2009, 28:48-57.
-
(2009)
EMBO J
, vol.28
, pp. 48-57
-
-
Daxinger, L.1
Kanno, T.2
Bucher, E.3
van der Winden, J.4
Naumann, U.5
Matzke, A.J.6
Matzke, M.7
-
24
-
-
46149113736
-
NRPD1a and NRPD1b are required to maintain post-transcriptional RNA silencing and RNA-directed DNA methylation in Arabidopsis
-
Eamens A., Vaistij F.E., Jones L. NRPD1a and NRPD1b are required to maintain post-transcriptional RNA silencing and RNA-directed DNA methylation in Arabidopsis. Plant J 2008, 55:596-606.
-
(2008)
Plant J
, vol.55
, pp. 596-606
-
-
Eamens, A.1
Vaistij, F.E.2
Jones, L.3
-
25
-
-
14844295120
-
RNA polymerase IV directs silencing of endogenous DNA
-
Herr A.J., Jensen M.B., Dalmay T., Baulcombe D.C. RNA polymerase IV directs silencing of endogenous DNA. Science 2005, 308:118-120.
-
(2005)
Science
, vol.308
, pp. 118-120
-
-
Herr, A.J.1
Jensen, M.B.2
Dalmay, T.3
Baulcombe, D.C.4
-
26
-
-
17744364327
-
Gardening the genome: DNA methylation in Arabidopsis thaliana
-
Chan S.W., Henderson I.R., Jacobsen S.E. Gardening the genome: DNA methylation in Arabidopsis thaliana. Nat Rev Genet 2005, 6:351-360.
-
(2005)
Nat Rev Genet
, vol.6
, pp. 351-360
-
-
Chan, S.W.1
Henderson, I.R.2
Jacobsen, S.E.3
-
27
-
-
33745726564
-
RNAi, DRD1, and histone methylation actively target developmentally important non-CG DNA methylation in arabidopsis
-
Chan S.W., Henderson I.R., Zhang X., Shah G., Chien J.S., Jacobsen S.E. RNAi, DRD1, and histone methylation actively target developmentally important non-CG DNA methylation in arabidopsis. PLoS Genet 2006, 2:e83.
-
(2006)
PLoS Genet
, vol.2
-
-
Chan, S.W.1
Henderson, I.R.2
Zhang, X.3
Shah, G.4
Chien, J.S.5
Jacobsen, S.E.6
-
28
-
-
0037046810
-
Role of the arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing
-
Cao X., Jacobsen S.E. Role of the arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing. Curr Biol 2002, 12:1138-1144.
-
(2002)
Curr Biol
, vol.12
, pp. 1138-1144
-
-
Cao, X.1
Jacobsen, S.E.2
-
29
-
-
0347033302
-
Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation
-
Cao X., Aufsatz W., Zilberman D., Mette M.F., Huang M.S., Matzke M., Jacobsen S.E. Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation. Curr Biol 2003, 13:2212-2217.
-
(2003)
Curr Biol
, vol.13
, pp. 2212-2217
-
-
Cao, X.1
Aufsatz, W.2
Zilberman, D.3
Mette, M.F.4
Huang, M.S.5
Matzke, M.6
Jacobsen, S.E.7
-
30
-
-
33748629119
-
Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis
-
Zhang X., Yazaki J., Sundaresan A., Cokus S., Chan S.W., Chen H., Henderson I.R., Shinn P., Pellegrini M., Jacobsen S.E., et al. Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis. Cell 2006, 126:1189-1201.
-
(2006)
Cell
, vol.126
, pp. 1189-1201
-
-
Zhang, X.1
Yazaki, J.2
Sundaresan, A.3
Cokus, S.4
Chan, S.W.5
Chen, H.6
Henderson, I.R.7
Shinn, P.8
Pellegrini, M.9
Jacobsen, S.E.10
-
31
-
-
0038670503
-
Maintenance of CpG methylation is essential for epigenetic inheritance during plant gametogenesis
-
Saze H., Mittelsten Scheid O., Paszkowski J. Maintenance of CpG methylation is essential for epigenetic inheritance during plant gametogenesis. Nat Genet 2003, 34:65-69.
-
(2003)
Nat Genet
, vol.34
, pp. 65-69
-
-
Saze, H.1
Mittelsten Scheid, O.2
Paszkowski, J.3
-
32
-
-
42749087226
-
Highly integrated single-base resolution maps of the epigenome in Arabidopsis
-
Lister R., O'Malley R.C., Tonti-Filippini J., Gregory B.D., Berry C.C., Millar A.H., Ecker J.R. Highly integrated single-base resolution maps of the epigenome in Arabidopsis. Cell 2008, 133:523-536.
-
(2008)
Cell
, vol.133
, pp. 523-536
-
-
Lister, R.1
O'Malley, R.C.2
Tonti-Filippini, J.3
Gregory, B.D.4
Berry, C.C.5
Millar, A.H.6
Ecker, J.R.7
-
33
-
-
37249050851
-
Genetic interactions between DNA demethylation and methylation in Arabidopsis
-
Penterman J., Uzawa R., Fischer R.L. Genetic interactions between DNA demethylation and methylation in Arabidopsis. Plant Physiol 2007, 145:1549-1557.
-
(2007)
Plant Physiol
, vol.145
, pp. 1549-1557
-
-
Penterman, J.1
Uzawa, R.2
Fischer, R.L.3
-
34
-
-
55249089475
-
ROS3 is an RNA-binding protein required for DNA demethylation in Arabidopsis
-
Zheng X., Pontes O., Zhu J., Miki D., Zhang F., Li W.X., Iida K., Kapoor A., Pikaard C.S., Zhu J.K. ROS3 is an RNA-binding protein required for DNA demethylation in Arabidopsis. Nature 2008, 455:1259-1262.
-
(2008)
Nature
, vol.455
, pp. 1259-1262
-
-
Zheng, X.1
Pontes, O.2
Zhu, J.3
Miki, D.4
Zhang, F.5
Li, W.X.6
Iida, K.7
Kapoor, A.8
Pikaard, C.S.9
Zhu, J.K.10
-
35
-
-
33746807366
-
Role of the Arabidopsis DNA glycosylase/lyase ROS1 in active DNA demethylation
-
Agius F., Kapoor A., Zhu J.K. Role of the Arabidopsis DNA glycosylase/lyase ROS1 in active DNA demethylation. Proc Natl Acad Sci U S A 2006, 103:11796-11801.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 11796-11801
-
-
Agius, F.1
Kapoor, A.2
Zhu, J.K.3
-
36
-
-
40749109894
-
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
-
Cokus S.J., Feng S., Zhang X., Chen Z., Merriman B., Haudenschild C.D., Pradhan S., Nelson S.F., Pellegrini M., Jacobsen S.E. Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature 2008, 452:215-219.
-
(2008)
Nature
, vol.452
, pp. 215-219
-
-
Cokus, S.J.1
Feng, S.2
Zhang, X.3
Chen, Z.4
Merriman, B.5
Haudenschild, C.D.6
Pradhan, S.7
Nelson, S.F.8
Pellegrini, M.9
Jacobsen, S.E.10
-
37
-
-
77952355762
-
Genome-wide evolutionary analysis of eukaryotic DNA methylation
-
Zemach A., McDaniel I.E., Silva P., Zilberman D. Genome-wide evolutionary analysis of eukaryotic DNA methylation. Science 2010, 328:916-919.
-
(2010)
Science
, vol.328
, pp. 916-919
-
-
Zemach, A.1
McDaniel, I.E.2
Silva, P.3
Zilberman, D.4
-
38
-
-
33845880624
-
Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription
-
Zilberman D., Gehring M., Tran R.K., Ballinger T., Henikoff S. Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription. Nat Genet 2007, 39:61-69.
-
(2007)
Nat Genet
, vol.39
, pp. 61-69
-
-
Zilberman, D.1
Gehring, M.2
Tran, R.K.3
Ballinger, T.4
Henikoff, S.5
-
39
-
-
4444267930
-
Chromatin-based silencing mechanisms
-
Bender J. Chromatin-based silencing mechanisms. Curr Opin Plant Biol 2004, 7:521-526.
-
(2004)
Curr Opin Plant Biol
, vol.7
, pp. 521-526
-
-
Bender, J.1
-
40
-
-
0036178007
-
DNA methylation and the regulation of gene transcription
-
Attwood J.T., Yung R.L., Richardson B.C. DNA methylation and the regulation of gene transcription. Cell Mol Life Sci 2002, 59:241-257.
-
(2002)
Cell Mol Life Sci
, vol.59
, pp. 241-257
-
-
Attwood, J.T.1
Yung, R.L.2
Richardson, B.C.3
-
41
-
-
34147098535
-
An expression atlas of rice mRNAs and small RNAs
-
Nobuta K., Venu R.C., Lu C., Belo A., Vemaraju K., Kulkarni K., Wang W., Pillay M., Green P.J., Wang G.L., et al. An expression atlas of rice mRNAs and small RNAs. Nat Biotechnol 2007, 25:473-477.
-
(2007)
Nat Biotechnol
, vol.25
, pp. 473-477
-
-
Nobuta, K.1
Venu, R.C.2
Lu, C.3
Belo, A.4
Vemaraju, K.5
Kulkarni, K.6
Wang, W.7
Pillay, M.8
Green, P.J.9
Wang, G.L.10
-
42
-
-
42449150879
-
Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)
-
Lu C., Jeong D.H., Kulkarni K., Pillay M., Nobuta K., German R., Thatcher S.R., Maher C., Zhang L., Ware D., et al. Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs). Proc Natl Acad Sci U S A 2008, 105:4951-4956.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 4951-4956
-
-
Lu, C.1
Jeong, D.H.2
Kulkarni, K.3
Pillay, M.4
Nobuta, K.5
German, R.6
Thatcher, S.R.7
Maher, C.8
Zhang, L.9
Ware, D.10
-
43
-
-
53549106068
-
Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
-
Moxon S., Jing R., Szittya G., Schwach F., Rusholme Pilcher R.L., Moulton V., Dalmay T. Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening. Genome Res 2008, 18:1602-1609.
-
(2008)
Genome Res
, vol.18
, pp. 1602-1609
-
-
Moxon, S.1
Jing, R.2
Szittya, G.3
Schwach, F.4
Rusholme Pilcher, R.L.5
Moulton, V.6
Dalmay, T.7
-
44
-
-
58249118839
-
High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families
-
Szittya G., Moxon S., Santos D.M., Jing R., Fevereiro M.P., Moulton V., Dalmay T. High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families. BMC Genomics 2008, 9:593.
-
(2008)
BMC Genomics
, vol.9
, pp. 593
-
-
Szittya, G.1
Moxon, S.2
Santos, D.M.3
Jing, R.4
Fevereiro, M.P.5
Moulton, V.6
Dalmay, T.7
-
45
-
-
67649958263
-
Heterochromatic siRNAs and DDM1 independently silence aberrant 5S rDNA transcripts in Arabidopsis
-
Blevins T., Pontes O., Pikaard C.S., Meins F. Heterochromatic siRNAs and DDM1 independently silence aberrant 5S rDNA transcripts in Arabidopsis. PLoS One 2009, 4:e5932.
-
(2009)
PLoS One
, vol.4
-
-
Blevins, T.1
Pontes, O.2
Pikaard, C.S.3
Meins, F.4
-
46
-
-
34347356439
-
Transcription of the 5S rRNA heterochromatic genes is epigenetically controlled in Arabidopsis thaliana and Xenopus laevis
-
Douet J., Tourmente S. Transcription of the 5S rRNA heterochromatic genes is epigenetically controlled in Arabidopsis thaliana and Xenopus laevis. Heredity 2007, 99:5-13.
-
(2007)
Heredity
, vol.99
, pp. 5-13
-
-
Douet, J.1
Tourmente, S.2
-
47
-
-
24344433177
-
Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis
-
Pontier D., Yahubyan G., Vega D., Bulski A., Saez-Vasquez J., Hakimi M.A., Lerbs-Mache S., Colot V., Lagrange T. Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis. Genes Dev 2005, 19:2030-2040.
-
(2005)
Genes Dev
, vol.19
, pp. 2030-2040
-
-
Pontier, D.1
Yahubyan, G.2
Vega, D.3
Bulski, A.4
Saez-Vasquez, J.5
Hakimi, M.A.6
Lerbs-Mache, S.7
Colot, V.8
Lagrange, T.9
-
48
-
-
22844446837
-
RNA polymerase IV and transcriptional silencing
-
Vaucheret H. RNA polymerase IV and transcriptional silencing. Nat Genet 2005, 37:659-660.
-
(2005)
Nat Genet
, vol.37
, pp. 659-660
-
-
Vaucheret, H.1
-
49
-
-
73349109162
-
A Pol V-mediated silencing, independent of RNA-directed DNA methylation, applies to 5S rDNA
-
Douet J., Tutois S., Tourmente S. A Pol V-mediated silencing, independent of RNA-directed DNA methylation, applies to 5S rDNA. PLoS Genet 2009, 5:e1000690.
-
(2009)
PLoS Genet
, vol.5
-
-
Douet, J.1
Tutois, S.2
Tourmente, S.3
-
50
-
-
68449100991
-
RNA polymerase V functions in Arabidopsis interphase heterochromatin organization independently of the 24-nt siRNA-directed DNA methylation pathway
-
Pontes O., Costa-Nunes P., Vithayathil P., Pikaard C.S. RNA polymerase V functions in Arabidopsis interphase heterochromatin organization independently of the 24-nt siRNA-directed DNA methylation pathway. Mol Plant 2009, 2:700-710.
-
(2009)
Mol Plant
, vol.2
, pp. 700-710
-
-
Pontes, O.1
Costa-Nunes, P.2
Vithayathil, P.3
Pikaard, C.S.4
-
51
-
-
77953930032
-
Small RNAs, DNA methylation and transposable elements in wheat
-
Cantu D., Vanzetti L.S., Sumner A., Dubcovsky M., Matvienko M., Distelfeld A., Michelmore R.W., Dubcovsky J. Small RNAs, DNA methylation and transposable elements in wheat. BMC Genomics 2010, 11:408.
-
(2010)
BMC Genomics
, vol.11
, pp. 408
-
-
Cantu, D.1
Vanzetti, L.S.2
Sumner, A.3
Dubcovsky, M.4
Matvienko, M.5
Distelfeld, A.6
Michelmore, R.W.7
Dubcovsky, J.8
-
52
-
-
33847031363
-
Paramutation: from maize to mice
-
Chandler V.L. Paramutation: from maize to mice. Cell 2007, 128:641-645.
-
(2007)
Cell
, vol.128
, pp. 641-645
-
-
Chandler, V.L.1
-
53
-
-
73649130943
-
RNA-silencing enzymes Pol IV and Pol V in maize: more than one flavor?
-
Pikaard C.S., Tucker S. RNA-silencing enzymes Pol IV and Pol V in maize: more than one flavor?. PLoS Genet 2009, 5:e1000736.
-
(2009)
PLoS Genet
, vol.5
-
-
Pikaard, C.S.1
Tucker, S.2
-
54
-
-
33746363573
-
An RNA-dependent RNA polymerase is required for paramutation in maize
-
Alleman M., Sidorenko L., McGinnis K., Seshadri V., Dorweiler J.E., White J., Sikkink K., Chandler V.L. An RNA-dependent RNA polymerase is required for paramutation in maize. Nature 2006, 442:295-298.
-
(2006)
Nature
, vol.442
, pp. 295-298
-
-
Alleman, M.1
Sidorenko, L.2
McGinnis, K.3
Seshadri, V.4
Dorweiler, J.E.5
White, J.6
Sikkink, K.7
Chandler, V.L.8
-
55
-
-
73649130942
-
A dominant mutation in mediator of paramutation2, one of three second-largest subunits of a plant-specific RNA polymerase, disrupts multiple siRNA silencing processes
-
Sidorenko L., Dorweiler J.E., Cigan A.M., Arteaga-Vazquez M., Vyas M., Kermicle J., Jurcin D., Brzeski J., Cai Y., Chandler V.L. A dominant mutation in mediator of paramutation2, one of three second-largest subunits of a plant-specific RNA polymerase, disrupts multiple siRNA silencing processes. PLoS Genet 2009, 5:e1000725.
-
(2009)
PLoS Genet
, vol.5
-
-
Sidorenko, L.1
Dorweiler, J.E.2
Cigan, A.M.3
Arteaga-Vazquez, M.4
Vyas, M.5
Kermicle, J.6
Jurcin, D.7
Brzeski, J.8
Cai, Y.9
Chandler, V.L.10
-
56
-
-
61849138270
-
RNA-dependent RNA polymerase is required for enhancer-mediated transcriptional silencing associated with paramutation at the maize p1 gene
-
Sidorenko L., Chandler V. RNA-dependent RNA polymerase is required for enhancer-mediated transcriptional silencing associated with paramutation at the maize p1 gene. Genetics 2008, 180:1983-1993.
-
(2008)
Genetics
, vol.180
, pp. 1983-1993
-
-
Sidorenko, L.1
Chandler, V.2
-
57
-
-
35648945855
-
A novel Snf2 protein maintains trans-generational regulatory states established by paramutation in maize
-
Hale C.J., Stonaker J.L., Gross S.M., Hollick J.B. A novel Snf2 protein maintains trans-generational regulatory states established by paramutation in maize. PLoS Biol 2007, 5:e275.
-
(2007)
PLoS Biol
, vol.5
-
-
Hale, C.J.1
Stonaker, J.L.2
Gross, S.M.3
Hollick, J.B.4
-
58
-
-
61349107326
-
RNA polymerase IV functions in paramutation in Zea mays
-
Erhard K.F., Stonaker J.L., Parkinson S.E., Lim J.P., Hale C.J., Hollick J.B. RNA polymerase IV functions in paramutation in Zea mays. Science 2009, 323:1201-1205.
-
(2009)
Science
, vol.323
, pp. 1201-1205
-
-
Erhard, K.F.1
Stonaker, J.L.2
Parkinson, S.E.3
Lim, J.P.4
Hale, C.J.5
Hollick, J.B.6
-
59
-
-
70149109627
-
Production and processing of siRNA precursor transcripts from the highly repetitive maize genome
-
Hale C.J., Erhard K.F., Lisch D., Hollick J.B. Production and processing of siRNA precursor transcripts from the highly repetitive maize genome. PLoS Genet 2009, 5:e1000598.
-
(2009)
PLoS Genet
, vol.5
-
-
Hale, C.J.1
Erhard, K.F.2
Lisch, D.3
Hollick, J.B.4
-
60
-
-
34547660559
-
Maize sex determination and abaxial leaf fates are canalized by a factor that maintains repressed epigenetic states
-
Parkinson S.E., Gross S.M., Hollick J.B. Maize sex determination and abaxial leaf fates are canalized by a factor that maintains repressed epigenetic states. Dev Biol 2007, 308:462-473.
-
(2007)
Dev Biol
, vol.308
, pp. 462-473
-
-
Parkinson, S.E.1
Gross, S.M.2
Hollick, J.B.3
-
61
-
-
54449085115
-
Distinct size distribution of endogeneous siRNAs in maize: evidence from deep sequencing in the mop1-1 mutant
-
Nobuta K., Lu C., Shrivastava R., Pillay M., De Paoli E., Accerbi M., Arteaga-Vazquez M., Sidorenko L., Jeong D.H., Yen Y., et al. Distinct size distribution of endogeneous siRNAs in maize: evidence from deep sequencing in the mop1-1 mutant. Proc Natl Acad Sci U S A 2008, 105:14958-14963.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 14958-14963
-
-
Nobuta, K.1
Lu, C.2
Shrivastava, R.3
Pillay, M.4
De Paoli, E.5
Accerbi, M.6
Arteaga-Vazquez, M.7
Sidorenko, L.8
Jeong, D.H.9
Yen, Y.10
-
62
-
-
73649111706
-
Diversity of Pol IV function is defined by mutations at the maize rmr7 locus
-
Stonaker J.L., Lim J.P., Erhard K.F., Hollick J.B. Diversity of Pol IV function is defined by mutations at the maize rmr7 locus. PLoS Genet 2009, 5:e1000706.
-
(2009)
PLoS Genet
, vol.5
-
-
Stonaker, J.L.1
Lim, J.P.2
Erhard, K.F.3
Hollick, J.B.4
-
63
-
-
0034353111
-
Mediator of paramutation1 is required for establishment and maintenance of paramutation at multiple maize loci
-
Dorweiler J.E., Carey C.C., Kubo K.M., Hollick J.B., Kermicle J.L., Chandler V.L. Mediator of paramutation1 is required for establishment and maintenance of paramutation at multiple maize loci. Plant Cell 2000, 12:2101-2118.
-
(2000)
Plant Cell
, vol.12
, pp. 2101-2118
-
-
Dorweiler, J.E.1
Carey, C.C.2
Kubo, K.M.3
Hollick, J.B.4
Kermicle, J.L.5
Chandler, V.L.6
-
64
-
-
0037197916
-
A mutation that prevents paramutation in maize also reverses mutator transposon methylation and silencing
-
Lisch D., Carey C.C., Dorweiler J.E., Chandler V.L. A mutation that prevents paramutation in maize also reverses mutator transposon methylation and silencing. Proc Natl Acad Sci U S A 2002, 99:6130-6135.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 6130-6135
-
-
Lisch, D.1
Carey, C.C.2
Dorweiler, J.E.3
Chandler, V.L.4
-
65
-
-
61849115258
-
Pattern formation via small RNA mobility
-
Chitwood D.H., Nogueira F.T., Howell M.D., Montgomery T.A., Carrington J.C., Timmermans M.C. Pattern formation via small RNA mobility. Genes Dev 2009, 23:549-554.
-
(2009)
Genes Dev
, vol.23
, pp. 549-554
-
-
Chitwood, D.H.1
Nogueira, F.T.2
Howell, M.D.3
Montgomery, T.A.4
Carrington, J.C.5
Timmermans, M.C.6
-
66
-
-
77952679512
-
Cell signalling by microRNA165/6 directs gene dose-dependent root cell fate
-
Carlsbecker A., Lee J.Y., Roberts C.J., Dettmer J., Lehesranta S., Zhou J., Lindgren O., Moreno-Risueno M.A., Vaten A., Thitamadee S., et al. Cell signalling by microRNA165/6 directs gene dose-dependent root cell fate. Nature 2010, 465:316-321.
-
(2010)
Nature
, vol.465
, pp. 316-321
-
-
Carlsbecker, A.1
Lee, J.Y.2
Roberts, C.J.3
Dettmer, J.4
Lehesranta, S.5
Zhou, J.6
Lindgren, O.7
Moreno-Risueno, M.A.8
Vaten, A.9
Thitamadee, S.10
-
67
-
-
77952403409
-
Small silencing RNAs in plants are mobile and direct epigenetic modification in recipient cells
-
Molnar A., Melnyk C.W., Bassett A., Hardcastle T.J., Dunn R., Baulcombe D.C. Small silencing RNAs in plants are mobile and direct epigenetic modification in recipient cells. Science 2010, 328:872-875.
-
(2010)
Science
, vol.328
, pp. 872-875
-
-
Molnar, A.1
Melnyk, C.W.2
Bassett, A.3
Hardcastle, T.J.4
Dunn, R.5
Baulcombe, D.C.6
-
68
-
-
59349118366
-
Epigenetic reprogramming and small RNA silencing of transposable elements in pollen
-
Slotkin R.K., Vaughn M., Borges F., Tanurdzic M., Becker J.D., Feijo J.A., Martienssen R.A. Epigenetic reprogramming and small RNA silencing of transposable elements in pollen. Cell 2009, 136:461-472.
-
(2009)
Cell
, vol.136
, pp. 461-472
-
-
Slotkin, R.K.1
Vaughn, M.2
Borges, F.3
Tanurdzic, M.4
Becker, J.D.5
Feijo, J.A.6
Martienssen, R.A.7
-
69
-
-
67650461957
-
Uniparental expression of PolIV-dependent siRNAs in developing endosperm of Arabidopsis
-
Mosher R.A., Melnyk C.W., Kelly K.A., Dunn R.M., Studholme D.J., Baulcombe D.C. Uniparental expression of PolIV-dependent siRNAs in developing endosperm of Arabidopsis. Nature 2009, 460:283-286.
-
(2009)
Nature
, vol.460
, pp. 283-286
-
-
Mosher, R.A.1
Melnyk, C.W.2
Kelly, K.A.3
Dunn, R.M.4
Studholme, D.J.5
Baulcombe, D.C.6
-
70
-
-
77950086568
-
Control of female gamete formation by a small RNA pathway in Arabidopsis
-
Olmedo-Monfil V., Duran-Figueroa N., Arteaga-Vazquez M., Demesa-Arevalo E., Autran D., Grimanelli D., Slotkin R.K., Martienssen R.A., Vielle-Calzada J.P. Control of female gamete formation by a small RNA pathway in Arabidopsis. Nature 2010, 464:628-632.
-
(2010)
Nature
, vol.464
, pp. 628-632
-
-
Olmedo-Monfil, V.1
Duran-Figueroa, N.2
Arteaga-Vazquez, M.3
Demesa-Arevalo, E.4
Autran, D.5
Grimanelli, D.6
Slotkin, R.K.7
Martienssen, R.A.8
Vielle-Calzada, J.P.9
-
71
-
-
3342927934
-
Role of transposable elements in heterochromatin and epigenetic control
-
Lippman Z., Gendrel A.V., Black M., Vaughn M.W., Dedhia N., McCombie W.R., Lavine K., Mittal V., May B., Kasschau K.D., et al. Role of transposable elements in heterochromatin and epigenetic control. Nature 2004, 430:471-476.
-
(2004)
Nature
, vol.430
, pp. 471-476
-
-
Lippman, Z.1
Gendrel, A.V.2
Black, M.3
Vaughn, M.W.4
Dedhia, N.5
McCombie, W.R.6
Lavine, K.7
Mittal, V.8
May, B.9
Kasschau, K.D.10
-
72
-
-
78049354472
-
A small-RNA perspective on gametogenesis, fertilization, and early zygotic development
-
Bourc'his D., Voinnet O. A small-RNA perspective on gametogenesis, fertilization, and early zygotic development. Science 2010, 330:617-622.
-
(2010)
Science
, vol.330
, pp. 617-622
-
-
Bourc'his, D.1
Voinnet, O.2
-
73
-
-
61449191758
-
Genome-wide identification and analysis of small RNAs originated from natural antisense transcripts in Oryza sativa
-
Zhou X., Sunkar R., Jin H., Zhu J.K., Zhang W. Genome-wide identification and analysis of small RNAs originated from natural antisense transcripts in Oryza sativa. Genome Res 2009, 19:70-78.
-
(2009)
Genome Res
, vol.19
, pp. 70-78
-
-
Zhou, X.1
Sunkar, R.2
Jin, H.3
Zhu, J.K.4
Zhang, W.5
-
74
-
-
29244490062
-
Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis
-
Borsani O., Zhu J., Verslues P.E., Sunkar R., Zhu J.K. Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis. Cell 2005, 123:1279-1291.
-
(2005)
Cell
, vol.123
, pp. 1279-1291
-
-
Borsani, O.1
Zhu, J.2
Verslues, P.E.3
Sunkar, R.4
Zhu, J.K.5
-
75
-
-
35148870536
-
Widespread role for the flowering-time regulators FCA and FPA in RNA-mediated chromatin silencing
-
Baurle I., Smith L., Baulcombe D.C., Dean C. Widespread role for the flowering-time regulators FCA and FPA in RNA-mediated chromatin silencing. Science 2007, 318:109-112.
-
(2007)
Science
, vol.318
, pp. 109-112
-
-
Baurle, I.1
Smith, L.2
Baulcombe, D.C.3
Dean, C.4
-
76
-
-
33847611493
-
Small RNA-mediated chromatin silencing directed to the 3' region of the Arabidopsis gene encoding the developmental regulator, FLC
-
Swiezewski S., Crevillen P., Liu F., Ecker J.R., Jerzmanowski A., Dean C. Small RNA-mediated chromatin silencing directed to the 3' region of the Arabidopsis gene encoding the developmental regulator, FLC. Proc Natl Acad Sci U S A 2007, 104:3633-3638.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 3633-3638
-
-
Swiezewski, S.1
Crevillen, P.2
Liu, F.3
Ecker, J.R.4
Jerzmanowski, A.5
Dean, C.6
|