-
1
-
-
78651380337
-
New therapeutic approaches in breast cancer
-
Davies, E. and Hiscox, S. (2011) New therapeutic approaches in breast cancer. Maturitas, 68, 121-128.
-
(2011)
Maturitas
, vol.68
, pp. 121-128
-
-
Davies, E.1
Hiscox, S.2
-
2
-
-
0033637703
-
Cofactor dynamics and suffciency in estrogen receptor-regulated transcription
-
Shang, Y, Hu, X., DiRenzo, J., Lazar, M.A. and Brown, M. (2000) Cofactor dynamics and suffciency in estrogen receptor-regulated transcription. Cell, 103, 843-852.
-
(2000)
Cell
, vol.103
, pp. 843-852
-
-
Shang, Y.1
Hu, X.2
DiRenzo, J.3
Lazar, M.A.4
Brown, M.5
-
3
-
-
0023034983
-
An estrogen-responsive element derived from the 5' fanking region of the Xenopus vitellogenin A2 gene functions in transfected human cells
-
Klein-Hitpass, L., Schorpp, M., Wagner, U. and Ryffel, G.U. (1986) An estrogen-responsive element derived from the 5' fanking region of the Xenopus vitellogenin A2 gene functions in transfected human cells. Cell, 46, 1053-1061.
-
(1986)
Cell
, vol.46
, pp. 1053-1061
-
-
Klein-Hitpass, L.1
Schorpp, M.2
Wagner, U.3
Ryffel, G.U.4
-
4
-
-
0023808861
-
The estrogen receptor binds tightly to its responsive element as a ligand-induced homodimer
-
Kumar, V and Chambon, P. (1988) The estrogen receptor binds tightly to its responsive element as a ligand-induced homodimer. Cell, 55, 145-156.
-
(1988)
Cell
, vol.55
, pp. 145-156
-
-
Kumar, V.1
Chambon, P.2
-
5
-
-
0015762456
-
A human cell line from a pleural effusion derived from a breast carcinoma
-
Soule, H.D., Vazguez, J., Long, A., Albert, S. and Brennan, M. (1973) A human cell line from a pleural effusion derived from a breast carcinoma. J. Natl. Cancer Inst., 51, 1409-1416.
-
(1973)
J. Natl. Cancer Inst.
, vol.51
, pp. 1409-1416
-
-
Soule, H.D.1
Vazguez, J.2
Long, A.3
Albert, S.4
Brennan, M.5
-
6
-
-
0030802967
-
MCF-7: The frst hormone-responsive breast cancer cell line
-
Levenson, A.S. and Jordan, V.C. (1997) MCF-7: the frst hormone-responsive breast cancer cell line. Cancer Res., 57, 3071-3078.
-
(1997)
Cancer Res.
, vol.57
, pp. 3071-3078
-
-
Levenson, A.S.1
Jordan, V.C.2
-
7
-
-
33750336243
-
Multiplatform genome-wide identifcation and modeling of functional human estrogen receptor binding sites
-
Vega, V.B., Lin, C.-Y, Lai, K.S., Kong, S.L., Xie, M., Su, X., Teh, H.F., Thomsen, J.S., Yeo, A.L., Sung, W.K. et al (2006) Multiplatform genome-wide identifcation and modeling of functional human estrogen receptor binding sites. Genome Biol, 7, R82.
-
(2006)
Genome Biol
, vol.7
, pp. R82
-
-
Vega, V.B.1
Lin, C.-Y.2
Lai, K.S.3
Kong, S.L.4
Xie, M.5
Su, X.6
Teh, H.F.7
Thomsen, J.S.8
Yeo, A.L.9
Sung, W.K.10
-
8
-
-
78650638953
-
Integrative model of genomic factors for determining binding site selection by estrogen receptor-a
-
Joseph, R., Orlov, YL., Huss, M., Sun, W., Kong, S.L., Ukil, L., Pan, YF., Li, G., Lim, M., Thomsen, J.S. et al. (2010) Integrative model of genomic factors for determining binding site selection by estrogen receptor-a. Mol Syst. Biol, 6, 456.
-
(2010)
Mol Syst. Biol
, vol.6
, pp. 456
-
-
Joseph, R.1
Orlov, Y.L.2
Huss, M.3
Sun, W.4
Kong, S.L.5
Ukil, L.6
Pan, Y.F.7
Li, G.8
Lim, M.9
Thomsen, J.S.10
-
9
-
-
84911939594
-
Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
-
Vierstra, J., Rynes, E., Sandstrom, R., Zhang, M., Canfeld, T., Hansen, R.S., Stehling-Sun, S., Sabo, P.J., Byron, R., Humbert, R. et al. (2014) Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution. Science, 346, 1007-1012.
-
(2014)
Science
, vol.346
, pp. 1007-1012
-
-
Vierstra, J.1
Rynes, E.2
Sandstrom, R.3
Zhang, M.4
Canfeld, T.5
Hansen, R.S.6
Stehling-Sun, S.7
Sabo, P.J.8
Byron, R.9
Humbert, R.10
-
10
-
-
79960072084
-
AP-2-y regulates oestrogen receptor-mediated long-range chromatin interaction and gene transcription
-
Tan, S.K., Lin, Z.H., Chang, C.W., Varang, V, Chng, K.R., Pan, YF., Yong, E.L., Sung, W.K. and Cheung, E. (2011) AP-2-y regulates oestrogen receptor-mediated long-range chromatin interaction and gene transcription. EMBO J., 30, 2569-2581.
-
(2011)
EMBO J.
, vol.30
, pp. 2569-2581
-
-
Tan, S.K.1
Lin, Z.H.2
Chang, C.W.3
Varang, V.4
Chng, K.R.5
Pan, Y.F.6
Yong, E.L.7
Sung, W.K.8
Cheung, E.9
-
11
-
-
84897537555
-
Genome-wide activity of unliganded estrogen receptor-a in breast cancer cells
-
Caizzi, L., Ferrero, G., Cutrupi, S., Cordero, F., Ballare, C, Miano, V., Reineri, S., Ricci, L., Friard, O., Testori, A. et al. (2014) Genome-wide activity of unliganded estrogen receptor-a in breast cancer cells. Proc Natl. Acad. Sci. U.S.A., 111, 4892-4897.
-
(2014)
Proc Natl. Acad. Sci. U.S.A.
, vol.111
, pp. 4892-4897
-
-
Caizzi, L.1
Ferrero, G.2
Cutrupi, S.3
Cordero, F.4
Ballare, C.5
Miano, V.6
Reineri, S.7
Ricci, L.8
Friard, O.9
Testori, A.10
-
12
-
-
33746600263
-
Estrogen receptor target gene: An evolving concept
-
Carroll, J.S. and Brown, M. (2006) Estrogen receptor target gene: an evolving concept. Mol. Endocrinol., 20, 1707-1714.
-
(2006)
Mol. Endocrinol.
, vol.20
, pp. 1707-1714
-
-
Carroll, J.S.1
Brown, M.2
-
13
-
-
40849085514
-
FoxA1 translates epigenetic signatures into enhancer-driven lineage-specifc transcription
-
Lupien, M., Eeckhoute, J., Meyer, C.A., Wang, Q., Zhang, Y, Li, W., Carroll, J.S., Liu, X.S. and Brown, M. (2008) FoxA1 translates epigenetic signatures into enhancer-driven lineage-specifc transcription. Cell, 132, 958-970.
-
(2008)
Cell
, vol.132
, pp. 958-970
-
-
Lupien, M.1
Eeckhoute, J.2
Meyer, C.A.3
Wang, Q.4
Zhang, Y.5
Li, W.6
Carroll, J.S.7
Liu, X.S.8
Brown, M.9
-
14
-
-
84874507326
-
FoxA1 is a key mediator of hormonal response in breast and prostate cancer
-
Robinson, J.L.L. and Carroll, J.S. (2012) FoxA1 is a key mediator of hormonal response in breast and prostate cancer. Front. Endocrinol (Lausanne), 3, 68.
-
(2012)
Front. Endocrinol (Lausanne)
, vol.3
, pp. 68
-
-
Robinson, J.L.L.1
Carroll, J.S.2
-
15
-
-
22144486551
-
Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the forkhead protein FoxA1
-
Carroll, J.S., Liu, X.S., Brodsky, A.S., Li, W., Meyer, C.A., Szary, A.J., Eeckhoute, J., Shao, W., Hestermann, E. V, Geistlinger, T.R. et al (2005) Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the forkhead protein FoxA1. Cell, 122, 33-43.
-
(2005)
Cell
, vol.122
, pp. 33-43
-
-
Carroll, J.S.1
Liu, X.S.2
Brodsky, A.S.3
Li, W.4
Meyer, C.A.5
Szary, A.J.6
Eeckhoute, J.7
Shao, W.8
Hestermann, E.V.9
Geistlinger, T.R.10
-
16
-
-
84876222028
-
Selective inhibition of tumor oncogenes by disruption of super-enhancers
-
Loven, J., Hoke, H.A., Lin, C.Y, Lau, A., Orlando, D.A., Vakoc, C.R., Bradner, J.E., Lee, T.I. and Young, R.A. (2013) Selective inhibition of tumor oncogenes by disruption of super-enhancers. Cell, 153, 320-334.
-
(2013)
Cell
, vol.153
, pp. 320-334
-
-
Loven, J.1
Hoke, H.A.2
Lin, C.Y.3
Lau, A.4
Orlando, D.A.5
Vakoc, C.R.6
Bradner, J.E.7
Lee, T.I.8
Young, R.A.9
-
17
-
-
84876216563
-
Master transcription factors and mediator establish super-enhancers at key cell identity genes
-
Whyte, W.A., Orlando, D.A., Hnisz, D., Abraham, B.J., Lin, C.Y, Kagey, M.H., Rahl, P.B., Lee, T.I. and Young, R.A. (2013) Master transcription factors and mediator establish super-enhancers at key cell identity genes. Cell, 153, 307-319.
-
(2013)
Cell
, vol.153
, pp. 307-319
-
-
Whyte, W.A.1
Orlando, D.A.2
Hnisz, D.3
Abraham, B.J.4
Lin, C.Y.5
Kagey, M.H.6
Rahl, P.B.7
Lee, T.I.8
Young, R.A.9
-
18
-
-
84901842119
-
Targeting Myc in KSHV-associated primary effusion lymphoma with BET bromodomain inhibitors
-
Tolani, B., Gopalakrishnan, R., Punj, V., Matta, H. and Chaudhary, P.M. (2014) Targeting Myc in KSHV-associated primary effusion lymphoma with BET bromodomain inhibitors. Oncogene, 33, 2928-2937.
-
(2014)
Oncogene
, vol.33
, pp. 2928-2937
-
-
Tolani, B.1
Gopalakrishnan, R.2
Punj, V.3
Matta, H.4
Chaudhary, P.M.5
-
19
-
-
84917710235
-
Oncogene regulation. An oncogenic super-enhancer formed through somatic mutation of a noncoding intergenic element
-
Mansour, M.R., Abraham, B.J., Anders, L., Berezovskaya, A., Gutierrez, A., Durbin, A.D., Etchin, J., Lawton, L., Sallan, S.E., Silverman, L.B. et al. (2014) Oncogene regulation. An oncogenic super-enhancer formed through somatic mutation of a noncoding intergenic element. Science, 346, 1373-1377.
-
(2014)
Science
, vol.346
, pp. 1373-1377
-
-
Mansour, M.R.1
Abraham, B.J.2
Anders, L.3
Berezovskaya, A.4
Gutierrez, A.5
Durbin, A.D.6
Etchin, J.7
Lawton, L.8
Sallan, S.E.9
Silverman, L.B.10
-
20
-
-
84888015137
-
Super-enhancers in the control of cell identity and disease
-
Hnisz, D., Abraham, B.J., Lee, TI., Lau, A., Saint-Andre, V, Sigova, A.A., Hoke, H.A. and Young, R.A. (2013) Super-enhancers in the control of cell identity and disease. Cell, 155, 934-947.
-
(2013)
Cell
, vol.155
, pp. 934-947
-
-
Hnisz, D.1
Abraham, B.J.2
Lee, T.I.3
Lau, A.4
Saint-Andre, V.5
Sigova, A.A.6
Hoke, H.A.7
Young, R.A.8
-
21
-
-
77952567987
-
Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
-
Heinz, S., Benner, C, Spann, N., Bertolino, E., Lin, YC, Laslo, P., Cheng, J.X., Murre, C, Singh, H. and Glass, CK. (2010) Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol. Cell, 38, 576-589.
-
(2010)
Mol. Cell
, vol.38
, pp. 576-589
-
-
Heinz, S.1
Benner, C.2
Spann, N.3
Bertolino, E.4
Lin, Y.C.5
Laslo, P.6
Cheng, J.X.7
Murre, C.8
Singh, H.9
Glass, C.K.10
-
22
-
-
84908602740
-
NF-KB directs dynamic super enhancer formation in infammation and atherogenesis
-
Brown, J.D., Lin, CY, Duan, Q., Griffn, G, Federation, A.J., Paranal, R.M., Bair, S., Newton, G, Lichtman, A.H., Kung, A.L. et al. (2014) NF-KB directs dynamic super enhancer formation in infammation and atherogenesis. Mol. Cell, 56, 219-231.
-
(2014)
Mol. Cell
, vol.56
, pp. 219-231
-
-
Brown, J.D.1
Lin, C.Y.2
Duan, Q.3
Griffn, G.4
Federation, A.J.5
Paranal, R.M.6
Bair, S.7
Newton, G.8
Lichtman, A.H.9
Kung, A.L.10
-
23
-
-
84907978005
-
Control of embryonic stem cell identity by BRD4-dependent transcriptional elongation of super-enhancer-associatedpluripotency genes
-
Di Micco, R., Fontanals-Cirera, B., Low, V, Ntziachristos, P, Yuen, S.K., Lovell, CD., Dolgalev, I., Yonekubo, Y, Zhang, G, Rusinova, E. et al. (2014) Control of embryonic stem cell identity by BRD4-dependent transcriptional elongation of super-enhancer-associatedpluripotency genes. Cell Rep., 9, 234-247.
-
(2014)
Cell Rep.
, vol.9
, pp. 234-247
-
-
Di Micco, R.1
Fontanals-Cirera, B.2
Low, V.3
Ntziachristos, P.4
Yuen, S.K.5
Lovell, C.D.6
Dolgalev, I.7
Yonekubo, Y.8
Zhang, G.9
Rusinova, E.10
-
24
-
-
84943747585
-
Disruption of BRD4 at H3K27Ac-enriched enhancer region correlates with decreased c-Myc expression in Merkel cell carcinoma
-
Sengupta, D., Kannan, A., Kern, M., Moreno, M.A., Vural, E., Stack, B., Suen, J.Y, Tackett, A.J. and Gao, L. (2015) Disruption of BRD4 at H3K27Ac-enriched enhancer region correlates with decreased c-Myc expression in Merkel cell carcinoma. Epigenetics, 10, 460-466.
-
(2015)
Epigenetics
, vol.10
, pp. 460-466
-
-
Sengupta, D.1
Kannan, A.2
Kern, M.3
Moreno, M.A.4
Vural, E.5
Stack, B.6
Suen, J.Y.7
Tackett, A.J.8
Gao, L.9
-
25
-
-
24044531563
-
Thyroid hormone-induced juxtaposition of regulatory elements/factors and chromatin remodeling of Crabp1 dependent on MED1/TRAP220
-
Park, S.W., Li, G, Lin, Y-P, Barrero, M.J., Ge, K., Roeder, R.G and Wei, L.-N. (2005) Thyroid hormone-induced juxtaposition of regulatory elements/factors and chromatin remodeling of Crabp1 dependent on MED1/TRAP220. Mol. Cell, 19, 643-653.
-
(2005)
Mol. Cell
, vol.19
, pp. 643-653
-
-
Park, S.W.1
Li, G.2
Lin, Y.-P.3
Barrero, M.J.4
Ge, K.5
Roeder, R.G.6
Wei, L.-N.7
-
26
-
-
77957139539
-
Mediator and cohesin connect gene expression and chromatin architecture
-
Kagey, M.H., Newman, J.J., Bilodeau, S., Zhan, Y, Orlando, D.A., van Berkum, N.L., Ebmeier, CC, Goossens, J., Rahl, PB., Levine, S.S. et al. (2010) Mediator and cohesin connect gene expression and chromatin architecture. Nature, 467, 430-435.
-
(2010)
Nature
, vol.467
, pp. 430-435
-
-
Kagey, M.H.1
Newman, J.J.2
Bilodeau, S.3
Zhan, Y.4
Orlando, D.A.5
Van Berkum, N.L.6
Ebmeier, C.C.7
Goossens, J.8
Rahl, P.B.9
Levine, S.S.10
-
27
-
-
77958111633
-
The metazoan Mediator co-activator complex as an integrative hub for transcriptional regulation
-
Malik, S. and Roeder, R.G (2010) The metazoan Mediator co-activator complex as an integrative hub for transcriptional regulation. Nat. Rev. Genet., 11, 761-772.
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 761-772
-
-
Malik, S.1
Roeder, R.G.2
-
28
-
-
84894084126
-
The Mediator complex: A master coordinator of transcription and cell lineage development
-
Yin, J. and Wang, G. (2014) The Mediator complex: a master coordinator of transcription and cell lineage development. Development, 141, 977-987.
-
(2014)
Development
, vol.141
, pp. 977-987
-
-
Yin, J.1
Wang, G.2
-
29
-
-
80052751115
-
Gene-specifc transcription activation via long-range allosteric shape-shifting
-
Tsai, C-J. and Nussinov, R. (2011) Gene-specifc transcription activation via long-range allosteric shape-shifting. Biochem. J., 439, 15-25.
-
(2011)
Biochem. J.
, vol.439
, pp. 15-25
-
-
Tsai, C.-J.1
Nussinov, R.2
-
30
-
-
77951836691
-
A CTCF-independent role for cohesin in tissue-specifc transcription
-
Schmidt, D., Schwalie, PC, Ross-Innes, CS., Hurtado, A., Brown, GD., Carroll, J.S., Flicek, P and Odom, D.T (2010) A CTCF-independent role for cohesin in tissue-specifc transcription. Genome Res., 20, 578-588.
-
(2010)
Genome Res.
, vol.20
, pp. 578-588
-
-
Schmidt, D.1
Schwalie, P.C.2
Ross-Innes, C.S.3
Hurtado, A.4
Brown, G.D.5
Carroll, J.S.6
Flicek, P.7
Odom, D.T.8
-
31
-
-
66549085342
-
ChIP-Seq of ERalpha and RNA polymerase II defnes genes differentially responding to ligands
-
Welboren, W.-J., van Driel, M.A., Janssen-Megens, E.M., van Heeringen, S.J., Sweep, FC, Span, PN. and Stunnenberg, H.G (2009) ChIP-Seq of ERalpha and RNA polymerase II defnes genes differentially responding to ligands. EMBO J., 28, 1418-1428.
-
(2009)
EMBO J.
, vol.28
, pp. 1418-1428
-
-
Welboren, W.-J.1
Van Driel, M.A.2
Janssen-Megens, E.M.3
Van Heeringen, S.J.4
Sweep, F.C.5
Span, P.N.6
Stunnenberg, H.G.7
-
32
-
-
84923039249
-
RUNX1, an androgen-and EZH2-regulated gene, has differential roles in AR-dependent and-independent prostate cancer
-
Takayama, K., Suzuki, T, Tsutsumi, S., Fujimura, T, Urano, T, Takahashi, S., Homma, Y, Aburatani, H. and Inoue, S. (2015) RUNX1, an androgen-and EZH2-regulated gene, has differential roles in AR-dependent and-independent prostate cancer. Oncotarget, 6, 2263-2276.
-
(2015)
Oncotarget
, vol.6
, pp. 2263-2276
-
-
Takayama, K.1
Suzuki, T.2
Tsutsumi, S.3
Fujimura, T.4
Urano, T.5
Takahashi, S.6
Homma, Y.7
Aburatani, H.8
Inoue, S.9
-
33
-
-
84872522528
-
Latent enhancers activated by stimulation in differentiated cells
-
Ostuni, R., Piccolo, V, Barozzi, I., Polletti, S., Termanini, A., Bonifacio, S., Curina, A., Prosperini, E., Ghisletti, S. and Natoli, G (2013) Latent enhancers activated by stimulation in differentiated cells. Cell, 152, 157-171.
-
(2013)
Cell
, vol.152
, pp. 157-171
-
-
Ostuni, R.1
Piccolo, V.2
Barozzi, I.3
Polletti, S.4
Termanini, A.5
Bonifacio, S.6
Curina, A.7
Prosperini, E.8
Ghisletti, S.9
Natoli, G.10
-
34
-
-
84937469181
-
1, 25-Dihydroxyvitamin D3 Controls a Cohort of Vitamin D Receptor Target Genes in the Proximal Intestine That Is Enriched for Calcium-regulating Components
-
Lee, S.M., Riley, E.M., Meyer, M.B., Benkusky, N.A., Plum, L.A., DeLuca, H.F and Pike, J.W. (2015) 1, 25-Dihydroxyvitamin D3 Controls a Cohort of Vitamin D Receptor Target Genes in the Proximal Intestine That Is Enriched for Calcium-regulating Components. J. Biol. Chem., 290, 18199-18215.
-
(2015)
J. Biol. Chem.
, vol.290
, pp. 18199-18215
-
-
Lee, S.M.1
Riley, E.M.2
Meyer, M.B.3
Benkusky, N.A.4
Plum, L.A.5
DeLuca, H.F.6
Pike, J.W.7
-
35
-
-
0036081355
-
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
-
Edgar, R., Domrachev, M. and Lash, A.E. (2002) Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res., 30, 207-210.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 207-210
-
-
Edgar, R.1
Domrachev, M.2
Lash, A.E.3
-
36
-
-
84891925011
-
Master regulators of FGFR2 signalling and breast cancer risk
-
Fletcher, M.N.C, Castro, M.A.A., Wang, X., de Santiago, I., O'Reilly, M., Chin, S.-F, Rueda, O.M., Caldas, C., Ponder, B.A.J., Markowetz, F et al. (2013) Master regulators of FGFR2 signalling and breast cancer risk. Nat. Commun., 4, 2464.
-
(2013)
Nat. Commun.
, vol.4
, pp. 2464
-
-
Fletcher, M.N.C.1
Castro, M.A.A.2
Wang, X.3
De Santiago, I.4
O'Reilly, M.5
Chin, S.-F.6
Rueda, O.M.7
Caldas, C.8
Ponder, B.A.J.9
Markowetz, F.10
-
37
-
-
84879695128
-
Functional roles of enhancer RNAs for oestrogen-dependent transcriptional activation
-
Li, W., Notani, D., Ma, Q., Tanasa, B., Nunez, E., Chen, A.Y, Merkurjev, D., Zhang, J., Ohgi, K., Song, X. et al. (2013) Functional roles of enhancer RNAs for oestrogen-dependent transcriptional activation. Nature, 498, 516-520.
-
(2013)
Nature
, vol.498
, pp. 516-520
-
-
Li, W.1
Notani, D.2
Ma, Q.3
Tanasa, B.4
Nunez, E.5
Chen, A.Y.6
Merkurjev, D.7
Zhang, J.8
Ohgi, K.9
Song, X.10
-
38
-
-
78650638953
-
Integrative model of genomic factors for determining binding site selection by estrogen receptor-a;
-
Joseph, R., Orlov, YL., Huss, M., Sun, W., Kong, S.L., Ukil, L., Pan, YF, Li, G, Lim, M., Thomsen, J.S. et al. (2010) Integrative model of genomic factors for determining binding site selection by estrogen receptor-a;. Mol. Syst. Biol, 6, 456.
-
(2010)
Mol. Syst. Biol
, vol.6
, pp. 456
-
-
Joseph, R.1
Orlov, Y.L.2
Huss, M.3
Sun, W.4
Kong, S.L.5
Ukil, L.6
Pan, Y.F.7
Li, G.8
Lim, M.9
Thomsen, J.S.10
-
39
-
-
77949916244
-
On the detection and refnement of transcription factor binding sites using ChIP-Seq data
-
Hu, M., Yu, J., Taylor, J.M.G, Chinnaiyan, A.M. and Qin, Z.S. (2010) On the detection and refnement of transcription factor binding sites using ChIP-Seq data. Nucleic Acids Res., 38, 2154-2167.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 2154-2167
-
-
Hu, M.1
Yu, J.2
Taylor, J.M.G.3
Chinnaiyan, A.M.4
Qin, Z.S.5
-
40
-
-
66549085342
-
ChIP-Seq of ERalpha and RNA polymerase II defnes genes differentially responding to ligands
-
Welboren, W.-J., van Driel, M.A., Janssen-Megens, E.M., van Heeringen, S.J., Sweep, FC, Span, PN. and Stunnenberg, H.G (2009) ChIP-Seq of ERalpha and RNA polymerase II defnes genes differentially responding to ligands. EMBO J., 28, 1418-1428.
-
(2009)
EMBO J.
, vol.28
, pp. 1418-1428
-
-
Welboren, W.-J.1
Van Driel, M.A.2
Janssen-Megens, E.M.3
Van Heeringen, S.J.4
Sweep, F.C.5
Span, P.N.6
Stunnenberg, H.G.7
-
41
-
-
84950111512
-
The histone variant H2A.Z is an important regulator of enhancer activity
-
Brunelle, M., Nordell Markovits, A., Rodrigue, S., Lupien, M., Jacques, P-E. and Gevry, N. (2015) The histone variant H2A.Z is an important regulator of enhancer activity. Nucleic Acids Res., 43, 9742-9756.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. 9742-9756
-
-
Brunelle, M.1
Nordell Markovits, A.2
Rodrigue, S.3
Lupien, M.4
Jacques, P.-E.5
Gevry, N.6
-
42
-
-
84861889354
-
Differential DNase I hypersensitivity reveals factor-dependent chromatin dynamics
-
He, H.H., Meyer, CA., Chen, M.W., Jordan, VC, Brown, M. and Liu, X.S. (2012) Differential DNase I hypersensitivity reveals factor-dependent chromatin dynamics. Genome Res., 22, 1015-1025.
-
(2012)
Genome Res.
, vol.22
, pp. 1015-1025
-
-
He, H.H.1
Meyer, C.A.2
Chen, M.W.3
Jordan, V.C.4
Brown, M.5
Liu, X.S.6
-
43
-
-
84916897361
-
Enhancer activation requires trans-recruitment of a mega transcription factor complex
-
Liu, Z., Merkurjev, D, Yang, F, Li, W., Oh, S., Friedman, M.J., Song, X., Zhang, F, Ma, Q., Ohgi, K.A. et al. (2014) Enhancer activation requires trans-recruitment of a mega transcription factor complex. Cell, 159, 358-373.
-
(2014)
Cell
, vol.159
, pp. 358-373
-
-
Liu, Z.1
Merkurjev, D.2
Yang, F.3
Li, W.4
Oh, S.5
Friedman, M.J.6
Song, X.7
Zhang, F.8
Ma, Q.9
Ohgi, K.A.10
-
44
-
-
84926151217
-
TNFa signaling exposes latent estrogen receptor binding sites to alter the breast cancer cell transcriptome
-
Franco, H.L., Nagari, A. and Kraus, W.L. (2015) TNFa signaling exposes latent estrogen receptor binding sites to alter the breast cancer cell transcriptome. Mol. Cell, 58, 21-34.
-
(2015)
Mol. Cell
, vol.58
, pp. 21-34
-
-
Franco, H.L.1
Nagari, A.2
Kraus, W.L.3
-
45
-
-
84962630625
-
Steroid Receptors Reprogram FoxA1 Occupancy through Dynamic Chromatin Transitions
-
Swinstead, E.E., Miranda, TB., Paakinaho, V., Baek, S., Goldstein, I., Hawkins, M., Karpova, T.S., Ball, D., Mazza, D, Lavis, L.D et al. (2016) Steroid Receptors Reprogram FoxA1 Occupancy through Dynamic Chromatin Transitions. Cell, 165, 593-605.
-
(2016)
Cell
, vol.165
, pp. 593-605
-
-
Swinstead, E.E.1
Miranda, T.B.2
Paakinaho, V.3
Baek, S.4
Goldstein, I.5
Hawkins, M.6
Karpova, T.S.7
Ball, D.8
Mazza, D.9
Lavis, L.D.10
-
46
-
-
78651250284
-
FOXA1 is a key determinant of estrogen receptor function and endocrine response
-
Hurtado, A., Holmes, K.A., Ross-Innes, CS., Schmidt, D and Carroll, J.S. (2011) FOXA1 is a key determinant of estrogen receptor function and endocrine response. Nat. Genet., 43, 27-33.
-
(2011)
Nat. Genet.
, vol.43
, pp. 27-33
-
-
Hurtado, A.1
Holmes, K.A.2
Ross-Innes, C.S.3
Schmidt, D.4
Carroll, J.S.5
-
47
-
-
84929511084
-
Transient estrogen receptor binding and p300 redistribution support a squelching mechanism for estradiol-repressed genes
-
Guertin, M.J., Zhang, X., Coonrod, S.A. and Hager, GL. (2014) Transient estrogen receptor binding and p300 redistribution support a squelching mechanism for estradiol-repressed genes. Mol. Endocrinol., 28, 1522-1533.
-
(2014)
Mol. Endocrinol.
, vol.28
, pp. 1522-1533
-
-
Guertin, M.J.1
Zhang, X.2
Coonrod, S.A.3
Hager, G.L.4
-
48
-
-
84996787997
-
Command line analysis of ChIP-seq results
-
Barta, E. (2011) Command line analysis of ChIP-seq results. EMBnet.journal, 17, 13-17.
-
(2011)
EMBnet.journal
, vol.17
, pp. 13-17
-
-
Barta, E.1
-
49
-
-
53849146020
-
Model-based analysis of ChIP-Seq (MACS)
-
Zhang, Y, Liu, T, Meyer, CA., Eeckhoute, J., Johnson, D.S., Bernstein, B.E., Nusbaum, C, Myers, R.M., Brown, M., Li, W. et al. (2008) Model-based analysis of ChIP-Seq (MACS). Genome Biol, 9, R137.
-
(2008)
Genome Biol
, vol.9
, pp. R137
-
-
Zhang, Y.1
Liu, T.2
Meyer, C.A.3
Eeckhoute, J.4
Johnson, D.S.5
Bernstein, B.E.6
Nusbaum, C.7
Myers, R.M.8
Brown, M.9
Li, W.10
-
50
-
-
84865790047
-
An integrated encyclopedia of DNA elements in the human genome
-
Dunham, I., Kundaje, A., Aldred, S.F, Collins, PJ., Davis, CA., Doyle, F, Epstein, CB., Frietze, S., Harrow, J., Kaul, R. et al. (2012) An integrated encyclopedia of DNA elements in the human genome. Nature, 489, 57-74.
-
(2012)
Nature
, vol.489
, pp. 57-74
-
-
Dunham, I.1
Kundaje, A.2
Aldred, S.F.3
Collins, P.J.4
Davis, C.A.5
Doyle, F.6
Epstein, C.B.7
Frietze, S.8
Harrow, J.9
Kaul, R.10
-
51
-
-
77951770756
-
BEDTools: A fexible suite of utilities for comparing genomic features
-
Quinlan, A.R. and Hall, I.M. (2010) BEDTools: a fexible suite of utilities for comparing genomic features. Bioinformatics, 26, 841-842.
-
(2010)
Bioinformatics
, vol.26
, pp. 841-842
-
-
Quinlan, A.R.1
Hall, I.M.2
-
52
-
-
9444225935
-
Java Treeview-extensible visualization of microarray data
-
Saldanha, A.J. (2004) Java Treeview-extensible visualization of microarray data. Bioinformatics, 20, 3246-3248.
-
(2004)
Bioinformatics
, vol.20
, pp. 3246-3248
-
-
Saldanha, A.J.1
-
53
-
-
0030606239
-
The transcriptional coactivators p300 and CBP are histone acetyltransferases
-
Ogryzko, V.V., Schiltz, R.L., Russanova, V., Howard, B.H. and Nakatani, Y. (1996) The transcriptional coactivators p300 and CBP are histone acetyltransferases. Cell, 87, 953-959.
-
(1996)
Cell
, vol.87
, pp. 953-959
-
-
Ogryzko, V.V.1
Schiltz, R.L.2
Russanova, V.3
Howard, B.H.4
Nakatani, Y.5
-
54
-
-
84859181036
-
Histone recognition and large-scale structural analysis of the human bromodomain family
-
Filippakopoulos, P., Picaud, S., Mangos, M., Keates, T., Lambert, J.-P., Barsyte-Lovejoy, D., Felletar, I., Volkmer, R., Müller, S., Pawson, T. et al. (2012) Histone recognition and large-scale structural analysis of the human bromodomain family. Cell, 149, 214-231.
-
(2012)
Cell
, vol.149
, pp. 214-231
-
-
Filippakopoulos, P.1
Picaud, S.2
Mangos, M.3
Keates, T.4
Lambert, J.-P.5
Barsyte-Lovejoy, D.6
Felletar, I.7
Volkmer, R.8
Müller, S.9
Pawson, T.10
-
55
-
-
84902355423
-
-
Siersbæk, R., Baek, S., Rabiee, A., Nielsen, R., Traynor, S., Clark, N., Sandelin, A., Jensen, O.N., Sung, M.-H., Hager, G.L. et al. (2014) Molecular architecture of transcription factor hotspots in early adipogenesis. 7, 1434-1442.
-
(2014)
Molecular Architecture of Transcription Factor Hotspots in Early Adipogenesis.
, vol.7
, pp. 1434-1442
-
-
Siersbæk, R.1
Baek, S.2
Rabiee, A.3
Nielsen, R.4
Traynor, S.5
Clark, N.6
Sandelin, A.7
Jensen, O.N.8
Sung, M.-H.9
Hager, G.L.10
-
56
-
-
84902302671
-
Transcription factor cooperativity in early adipogenic hotspots and super-enhancers
-
Siersbæk, R., Rabiee, A., Nielsen, R., Sidoli, S., Traynor, S., Loft, A., La Cour Poulsen, L., Rogowska-Wrzesinska, A., Jensen, O.N. and Mandrup, S. (2014) Transcription factor cooperativity in early adipogenic hotspots and super-enhancers. Cell Rep., 7, 1443-1455.
-
(2014)
Cell Rep.
, vol.7
, pp. 1443-1455
-
-
Siersbæk, R.1
Rabiee, A.2
Nielsen, R.3
Sidoli, S.4
Traynor, S.5
Loft, A.6
La Cour Poulsen, L.7
Rogowska-Wrzesinska, A.8
Jensen, O.N.9
Mandrup, S.10
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