-
1
-
-
84866146940
-
Diversity, stability and resilience of the human gut microbiota
-
1 Lozupone, C.A., Stombaugh, J.I., Gordon, J.I., et al. Diversity, stability and resilience of the human gut microbiota. Nature 489 (2012), 220–230.
-
(2012)
Nature
, vol.489
, pp. 220-230
-
-
Lozupone, C.A.1
Stombaugh, J.I.2
Gordon, J.I.3
-
2
-
-
84867225799
-
The role of the gut microbiota in nutrition and health
-
2 Flint, H.J., Scott, K.P., Louis, P., et al. The role of the gut microbiota in nutrition and health. Nat Rev Gastroenterol Hepatol 9 (2012), 577–589.
-
(2012)
Nat Rev Gastroenterol Hepatol
, vol.9
, pp. 577-589
-
-
Flint, H.J.1
Scott, K.P.2
Louis, P.3
-
3
-
-
84867192879
-
Intestinal inflammation targets cancer-inducing activity of the microbiota
-
3 Arthur, J.C., Perez-Chanona, E., Muhlbauer, M., et al. Intestinal inflammation targets cancer-inducing activity of the microbiota. Science 338 (2012), 120–123.
-
(2012)
Science
, vol.338
, pp. 120-123
-
-
Arthur, J.C.1
Perez-Chanona, E.2
Muhlbauer, M.3
-
4
-
-
84946144999
-
Gut mucosal microbiome across stages of colorectal carcinogenesis
-
4 Nakatsu, G., Li, X., Zhou, H., et al. Gut mucosal microbiome across stages of colorectal carcinogenesis. Nat Commun, 6, 2015, 8727.
-
(2015)
Nat Commun
, vol.6
, pp. 8727
-
-
Nakatsu, G.1
Li, X.2
Zhou, H.3
-
5
-
-
84942693814
-
Metagenomic analysis of faecal microbiome as a tool towards targeted non-invasive biomarkers for colorectal cancer
-
5 Yu, J., Feng, Q., Wong, S.H., et al. Metagenomic analysis of faecal microbiome as a tool towards targeted non-invasive biomarkers for colorectal cancer. Gut 66 (2017), 70–78.
-
(2017)
Gut
, vol.66
, pp. 70-78
-
-
Yu, J.1
Feng, Q.2
Wong, S.H.3
-
6
-
-
84993820006
-
Microbial dysbiosis and colon carcinogenesis: could colon cancer be considered a bacteria-related disease?
-
6 Sobhani, I., Amiot, A., Le Baleur, Y., et al. Microbial dysbiosis and colon carcinogenesis: could colon cancer be considered a bacteria-related disease?. Therap Adv Gastroenterol 6 (2013), 215–229.
-
(2013)
Therap Adv Gastroenterol
, vol.6
, pp. 215-229
-
-
Sobhani, I.1
Amiot, A.2
Le Baleur, Y.3
-
7
-
-
84868629743
-
Genomic insights into syntrophy: the paradigm for anaerobic metabolic cooperation
-
7 Sieber, J.R., McInerney, M.J., Gunsalus, R.P., Genomic insights into syntrophy: the paradigm for anaerobic metabolic cooperation. Annu Rev Microbiol 66 (2012), 429–452.
-
(2012)
Annu Rev Microbiol
, vol.66
, pp. 429-452
-
-
Sieber, J.R.1
McInerney, M.J.2
Gunsalus, R.P.3
-
8
-
-
0030799019
-
Colonic sulfide in pathogenesis and treatment of ulcerative colitis
-
8 Roediger, W.E.W., Moore, J., Babidge, W., Colonic sulfide in pathogenesis and treatment of ulcerative colitis. Dig Dis Sci 42 (1997), 1571–1579.
-
(1997)
Dig Dis Sci
, vol.42
, pp. 1571-1579
-
-
Roediger, W.E.W.1
Moore, J.2
Babidge, W.3
-
9
-
-
34250184585
-
Hydrogen sulfide induces direct radical-associated DNA damage
-
9 Attene-Ramos, M.S., Wagner, E.D., Gaskins, H.R., et al. Hydrogen sulfide induces direct radical-associated DNA damage. Mol Cancer Res 5 (2007), 455–459.
-
(2007)
Mol Cancer Res
, vol.5
, pp. 455-459
-
-
Attene-Ramos, M.S.1
Wagner, E.D.2
Gaskins, H.R.3
-
10
-
-
69949120571
-
A human colonic commensal promotes colon tumorigenesis via activation of T helper type 17 T cell responses
-
10 Wu, S.G., Rhee, K.J., Albesiano, E., et al. A human colonic commensal promotes colon tumorigenesis via activation of T helper type 17 T cell responses. Nat Med 15 (2009), 1016–1022.
-
(2009)
Nat Med
, vol.15
, pp. 1016-1022
-
-
Wu, S.G.1
Rhee, K.J.2
Albesiano, E.3
-
11
-
-
84882334105
-
Fusobacterium nucleatum promotes colorectal carcinogenesis by modulating E-cadherin/beta-catenin signaling via its FadA adhesin
-
11 Rubinstein, M.R., Wang, X., Liu, W., et al. Fusobacterium nucleatum promotes colorectal carcinogenesis by modulating E-cadherin/beta-catenin signaling via its FadA adhesin. Cell Host Microbe 14 (2013), 195–206.
-
(2013)
Cell Host Microbe
, vol.14
, pp. 195-206
-
-
Rubinstein, M.R.1
Wang, X.2
Liu, W.3
-
12
-
-
77954730486
-
Escherichia coli induces DNA damage in vivo and triggers genomic instability in mammalian cells
-
12 Cuevas-Ramos, G., Petit, C.R., Marcq, I., et al. Escherichia coli induces DNA damage in vivo and triggers genomic instability in mammalian cells. Proc Natl Acad Sci U S A 107 (2010), 11537–11542.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 11537-11542
-
-
Cuevas-Ramos, G.1
Petit, C.R.2
Marcq, I.3
-
13
-
-
84856534859
-
Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma
-
13 Castellarin, M., Warren, R.L., Freeman, J.D., et al. Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma. Genome Res 22 (2012), 299–306.
-
(2012)
Genome Res
, vol.22
, pp. 299-306
-
-
Castellarin, M.1
Warren, R.L.2
Freeman, J.D.3
-
14
-
-
0034460220
-
Apparent culture-negative prosthetic valve endocarditis caused by Peptostreptococcus magnus
-
14 van der Vorm, E.R., Dondorp, A.M., van Ketel, R.J., et al. Apparent culture-negative prosthetic valve endocarditis caused by Peptostreptococcus magnus. J Clin Microbiol 38 (2000), 4640–4642.
-
(2000)
J Clin Microbiol
, vol.38
, pp. 4640-4642
-
-
van der Vorm, E.R.1
Dondorp, A.M.2
van Ketel, R.J.3
-
15
-
-
0028219417
-
Identification of five Peptostreptococcus species isolated predominantly from the female genital tract by using the rapid ID32A system
-
15 Ng, J., Ng, L.K., Chow, A.W., et al. Identification of five Peptostreptococcus species isolated predominantly from the female genital tract by using the rapid ID32A system. J Clin Microbiol 32 (1994), 1302–1307.
-
(1994)
J Clin Microbiol
, vol.32
, pp. 1302-1307
-
-
Ng, J.1
Ng, L.K.2
Chow, A.W.3
-
16
-
-
34250155293
-
Antimicrobial susceptibilities of Peptostreptococcus anaerobius and the newly described Peptostreptococcus stomatis isolated from various human sources
-
16 Kononen, E., Bryk, A., Niemi, P., et al. Antimicrobial susceptibilities of Peptostreptococcus anaerobius and the newly described Peptostreptococcus stomatis isolated from various human sources. Antimicrob Agents Chemother 51 (2007), 2205–2207.
-
(2007)
Antimicrob Agents Chemother
, vol.51
, pp. 2205-2207
-
-
Kononen, E.1
Bryk, A.2
Niemi, P.3
-
17
-
-
84945563280
-
Periodontal-disease-associated biofilm: a reservoir for pathogens of medical importance
-
17 Vieira Colombo, A.P., Magalhaes, C.B., Hartenbach, F.A., et al. Periodontal-disease-associated biofilm: a reservoir for pathogens of medical importance. Microb Pathog 94 (2016), 27–34.
-
(2016)
Microb Pathog
, vol.94
, pp. 27-34
-
-
Vieira Colombo, A.P.1
Magalhaes, C.B.2
Hartenbach, F.A.3
-
18
-
-
84919327206
-
A comparative antimicrobial analysis of various root canal irrigating solutions on endodontic pathogens: an in vitro study
-
18 Misuriya, A., Bhardwaj, A., Bhardwaj, A., et al. A comparative antimicrobial analysis of various root canal irrigating solutions on endodontic pathogens: an in vitro study. J Contemp Dent Pract 15 (2014), 153–160.
-
(2014)
J Contemp Dent Pract
, vol.15
, pp. 153-160
-
-
Misuriya, A.1
Bhardwaj, A.2
Bhardwaj, A.3
-
19
-
-
77953179576
-
A comparison of the acceptance of immunochemical faecal occult blood test and colonoscopy in colorectal cancer screening: a prospective study among Chinese
-
19 Wong, M.C., Tsoi, K.K., Ng, S.S., et al. A comparison of the acceptance of immunochemical faecal occult blood test and colonoscopy in colorectal cancer screening: a prospective study among Chinese. Aliment Pharmacol Ther 32 (2010), 74–82.
-
(2010)
Aliment Pharmacol Ther
, vol.32
, pp. 74-82
-
-
Wong, M.C.1
Tsoi, K.K.2
Ng, S.S.3
-
20
-
-
84903901418
-
Informed choice vs. no choice in colorectal cancer screening tests: a prospective cohort study in real-life screening practice
-
20 Wong, M.C., Ching, J.Y., Chan, V.C., et al. Informed choice vs. no choice in colorectal cancer screening tests: a prospective cohort study in real-life screening practice. Am J Gastroenterol 109 (2014), 1072–1079.
-
(2014)
Am J Gastroenterol
, vol.109
, pp. 1072-1079
-
-
Wong, M.C.1
Ching, J.Y.2
Chan, V.C.3
-
21
-
-
10744219802
-
Quantitative real-time PCR using TaqMan and SYBR Green for Actinobacillus actinomycetemcomitans, Porphyromonas gingivalis, Prevotella intermedia, tetQ gene and total bacteria
-
21 Maeda, H., Fujimoto, C., Haruki, Y., et al. Quantitative real-time PCR using TaqMan and SYBR Green for Actinobacillus actinomycetemcomitans, Porphyromonas gingivalis, Prevotella intermedia, tetQ gene and total bacteria. FEMS Immunol Med Microbiol 39 (2003), 81–86.
-
(2003)
FEMS Immunol Med Microbiol
, vol.39
, pp. 81-86
-
-
Maeda, H.1
Fujimoto, C.2
Haruki, Y.3
-
22
-
-
84971529607
-
Hemolytic E. coli promotes colonic tumorigenesis in females
-
22 Jin, Y., Tang, S., Li, W., et al. Hemolytic E. coli promotes colonic tumorigenesis in females. Cancer Res 76 (2016), 2891–2900.
-
(2016)
Cancer Res
, vol.76
, pp. 2891-2900
-
-
Jin, Y.1
Tang, S.2
Li, W.3
-
23
-
-
84919643021
-
High-fat-diet-mediated dysbiosis promotes intestinal carcinogenesis independently of obesity
-
23 Schulz, M.D., Atay, C., Heringer, J., et al. High-fat-diet-mediated dysbiosis promotes intestinal carcinogenesis independently of obesity. Nature 514 (2014), 508–512.
-
(2014)
Nature
, vol.514
, pp. 508-512
-
-
Schulz, M.D.1
Atay, C.2
Heringer, J.3
-
24
-
-
84924690678
-
Gut microbiome development along the colorectal adenoma-carcinoma sequence
-
24 Feng, Q., Liang, S., Jia, H., et al. Gut microbiome development along the colorectal adenoma-carcinoma sequence. Nat Commun, 6, 2015, 6528.
-
(2015)
Nat Commun
, vol.6
, pp. 6528
-
-
Feng, Q.1
Liang, S.2
Jia, H.3
-
25
-
-
84969888744
-
Colorectal cancer and the human gut microbiome: reproducibility with whole-genome shotgun sequencing
-
25 Vogtmann, E., Hua, X., Zeller, G., et al. Colorectal cancer and the human gut microbiome: reproducibility with whole-genome shotgun sequencing. PLoS One, 11, 2016, e0155362.
-
(2016)
PLoS One
, vol.11
, pp. e0155362
-
-
Vogtmann, E.1
Hua, X.2
Zeller, G.3
-
26
-
-
84924026956
-
Potential of fecal microbiota for early-stage detection of colorectal cancer
-
26 Zeller, G., Tap, J., Voigt, A.Y., et al. Potential of fecal microbiota for early-stage detection of colorectal cancer. Mol Syst Biol, 10, 2014, 766.
-
(2014)
Mol Syst Biol
, vol.10
, pp. 766
-
-
Zeller, G.1
Tap, J.2
Voigt, A.Y.3
-
27
-
-
79955532516
-
TLR signalling augments macrophage bactericidal activity through mitochondrial ROS
-
27 West, A.P., Brodsky, I.E., Rahner, C., et al. TLR signalling augments macrophage bactericidal activity through mitochondrial ROS. Nature 472 (2011), 476–480.
-
(2011)
Nature
, vol.472
, pp. 476-480
-
-
West, A.P.1
Brodsky, I.E.2
Rahner, C.3
-
28
-
-
4644350365
-
Cutting edge: direct interaction of TLR4 with NAD(P)H oxidase 4 isozyme is essential for lipopolysaccharide-induced production of reactive oxygen species and activation of NF-kappa B
-
28 Park, H.S., Jung, H.Y., Park, E.Y., et al. Cutting edge: direct interaction of TLR4 with NAD(P)H oxidase 4 isozyme is essential for lipopolysaccharide-induced production of reactive oxygen species and activation of NF-kappa B. J Immunol 173 (2004), 3589–3593.
-
(2004)
J Immunol
, vol.173
, pp. 3589-3593
-
-
Park, H.S.1
Jung, H.Y.2
Park, E.Y.3
-
29
-
-
84886285170
-
Interaction of NADPH oxidase 1 with Toll-like receptor 2 induces migration of smooth muscle cells
-
29 Lee, J.H., Joo, J.H., Kim, J., et al. Interaction of NADPH oxidase 1 with Toll-like receptor 2 induces migration of smooth muscle cells. Cardiovasc Res 99 (2013), 483–493.
-
(2013)
Cardiovasc Res
, vol.99
, pp. 483-493
-
-
Lee, J.H.1
Joo, J.H.2
Kim, J.3
-
30
-
-
84884134120
-
Hepatic SREBP-2 and cholesterol biosynthesis are regulated by FoxO3 and Sirt6
-
30 Tao, R., Xiong, X., DePinho, R.A., et al. Hepatic SREBP-2 and cholesterol biosynthesis are regulated by FoxO3 and Sirt6. J Lipid Res 54 (2013), 2745–2753.
-
(2013)
J Lipid Res
, vol.54
, pp. 2745-2753
-
-
Tao, R.1
Xiong, X.2
DePinho, R.A.3
-
31
-
-
84859299139
-
Peroxisome deficiency-induced ER stress and SREBP-2 pathway activation in the liver of newborn PEX2 knock-out mice
-
31 Kovacs, W.J., Charles, K.N., Walter, K.M., et al. Peroxisome deficiency-induced ER stress and SREBP-2 pathway activation in the liver of newborn PEX2 knock-out mice. Biochim Biophys Acta 1821 (2012), 895–907.
-
(2012)
Biochim Biophys Acta
, vol.1821
, pp. 895-907
-
-
Kovacs, W.J.1
Charles, K.N.2
Walter, K.M.3
-
32
-
-
84863858371
-
Regulation of cholesterol and fatty acid synthesis
-
32 Ye, J., DeBose-Boyd, R.A., Regulation of cholesterol and fatty acid synthesis. Cold Spring Harb Perspect Biol, 3(7), 2011.
-
(2011)
Cold Spring Harb Perspect Biol
, vol.3
, Issue.7
-
-
Ye, J.1
DeBose-Boyd, R.A.2
-
33
-
-
0036209728
-
Enterococcus faecalis produces extracellular superoxide and hydrogen peroxide that damages colonic epithelial cell DNA
-
33 Huycke, M.M., Abrams, V., Moore, D.R., Enterococcus faecalis produces extracellular superoxide and hydrogen peroxide that damages colonic epithelial cell DNA. Carcinogenesis 23 (2002), 529–536.
-
(2002)
Carcinogenesis
, vol.23
, pp. 529-536
-
-
Huycke, M.M.1
Abrams, V.2
Moore, D.R.3
-
34
-
-
84862780548
-
4-Hydroxy-2-nonenal mediates genotoxicity and bystander effects caused by Enterococcus faecalis-infected macrophages
-
34 Wang, X.M., Yang, Y.H., Moore, D.R., et al. 4-Hydroxy-2-nonenal mediates genotoxicity and bystander effects caused by Enterococcus faecalis-infected macrophages. Gastroenterology 142 (2012), 543–551.
-
(2012)
Gastroenterology
, vol.142
, pp. 543-551
-
-
Wang, X.M.1
Yang, Y.H.2
Moore, D.R.3
-
35
-
-
84882354326
-
Fusobacterium nucleatum potentiates intestinal tumorigenesis and modulates the tumor-immune microenvironment
-
35 Kostic, A.D., Chun, E.Y., Robertson, L., et al. Fusobacterium nucleatum potentiates intestinal tumorigenesis and modulates the tumor-immune microenvironment. Cell Host Microbe 14 (2013), 207–215.
-
(2013)
Cell Host Microbe
, vol.14
, pp. 207-215
-
-
Kostic, A.D.1
Chun, E.Y.2
Robertson, L.3
-
36
-
-
85010756263
-
Fusobacterium nucleatum and T cells in colorectal carcinoma
-
36 Mima, K., Sukawa, Y., Nishihara, R., et al. Fusobacterium nucleatum and T cells in colorectal carcinoma. JAMA Oncol 1 (2015), 653–661.
-
(2015)
JAMA Oncol
, vol.1
, pp. 653-661
-
-
Mima, K.1
Sukawa, Y.2
Nishihara, R.3
-
37
-
-
84870542378
-
Regulation of cholesterol biosynthesis and cancer signaling
-
37 Gorin, A., Gabitova, L., Astsaturov, I., Regulation of cholesterol biosynthesis and cancer signaling. Curr Opin Pharmacol 12 (2012), 710–716.
-
(2012)
Curr Opin Pharmacol
, vol.12
, pp. 710-716
-
-
Gorin, A.1
Gabitova, L.2
Astsaturov, I.3
-
38
-
-
84880174760
-
The role of Toll-like receptor proteins (TLR) 2 and 4 in mediating inflammation in proximal tubules
-
38 Mudaliar, H., Pollock, C., Komala, M.G., et al. The role of Toll-like receptor proteins (TLR) 2 and 4 in mediating inflammation in proximal tubules. Am J Physiol Renal Physiol 305 (2013), F143–F154.
-
(2013)
Am J Physiol Renal Physiol
, vol.305
, pp. F143-F154
-
-
Mudaliar, H.1
Pollock, C.2
Komala, M.G.3
-
39
-
-
84908206016
-
Toll-like receptor expression in crypt epithelial cells, putative stem cells and intestinal myofibroblasts isolated from controls and patients with inflammatory bowel disease
-
39 Brown, M., Hughes, K.R., Moossavi, S., et al. Toll-like receptor expression in crypt epithelial cells, putative stem cells and intestinal myofibroblasts isolated from controls and patients with inflammatory bowel disease. Clin Exp Immunol 178 (2014), 28–39.
-
(2014)
Clin Exp Immunol
, vol.178
, pp. 28-39
-
-
Brown, M.1
Hughes, K.R.2
Moossavi, S.3
-
40
-
-
84924690678
-
Gut microbiome development along the colorectal adenoma-carcinoma sequence
-
1 Feng, Q., Liang, S., Jia, H., et al. Gut microbiome development along the colorectal adenoma-carcinoma sequence. Nat Commun, 6, 2015, 6528.
-
(2015)
Nat Commun
, vol.6
, pp. 6528
-
-
Feng, Q.1
Liang, S.2
Jia, H.3
-
41
-
-
84969888744
-
Colorectal cancer and the human gut microbiome: reproducibility with whole-genome shotgun sequencing
-
2 Vogtmann, E., Hua, X., Zeller, G., et al. Colorectal cancer and the human gut microbiome: reproducibility with whole-genome shotgun sequencing. PLoS One, 11, 2016, e0155362.
-
(2016)
PLoS One
, vol.11
, pp. e0155362
-
-
Vogtmann, E.1
Hua, X.2
Zeller, G.3
-
42
-
-
84924026956
-
Potential of fecal microbiota for early-stage detection of colorectal cancer
-
3 Zeller, G., Tap, J., Voigt, A.Y., et al. Potential of fecal microbiota for early-stage detection of colorectal cancer. Mol Syst Biol, 10, 2014, 766.
-
(2014)
Mol Syst Biol
, vol.10
, pp. 766
-
-
Zeller, G.1
Tap, J.2
Voigt, A.Y.3
-
43
-
-
84905049901
-
Trimmomatic: a flexible trimmer for Illumina sequence data
-
4 Bolger, A.M., Lohse, M., Usadel, B., Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30 (2014), 2114–2120.
-
(2014)
Bioinformatics
, vol.30
, pp. 2114-2120
-
-
Bolger, A.M.1
Lohse, M.2
Usadel, B.3
-
44
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
5 Langmead, B., Salzberg, S.L., Fast gapped-read alignment with Bowtie 2. Nat Methods 9 (2012), 357–359.
-
(2012)
Nat Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
45
-
-
84864440400
-
Metagenomic microbial community profiling using unique clade-specific marker genes
-
6 Segata, N., Waldron, L., Ballarini, A., et al. Metagenomic microbial community profiling using unique clade-specific marker genes. Nat Methods 9 (2012), 811–814.
-
(2012)
Nat Methods
, vol.9
, pp. 811-814
-
-
Segata, N.1
Waldron, L.2
Ballarini, A.3
|