메뉴 건너뛰기




Volumn 66, Issue 1, 2017, Pages 70-78

Metagenomic analysis of faecal microbiome as a tool towards targeted non-invasive biomarkers for colorectal cancer

(39)  Yu, Jun a   Feng, Qiang b,c   Wong, Sunny Hei a   Zhang, Dongya b   Yi Liang, Qiao a   Qin, Youwen b   Tang, Longqing b   Zhao, Hui b   Stenvang, Jan d   Li, Yanli b   Wang, Xiaokai b   Xu, Xiaoqiang b   Chen, Ning b   Wu, William Ka Kei a   Al Aama, Jumana b,e   Nielsen, Hans Jorgen f   Kiilerich, Pia c   Jensen, Benjamin Anderschou Holbech c   Yau, Tung On a   Lan, Zhou b   more..


Author keywords

[No Author keywords available]

Indexed keywords

TUMOR MARKER;

EID: 84942693814     PISSN: 00175749     EISSN: 14683288     Source Type: Journal    
DOI: 10.1136/gutjnl-2015-309800     Document Type: Article
Times cited : (848)

References (45)
  • 2
    • 77049105158 scopus 로고    scopus 로고
    • Beyond genome-wide association studies: Genetic heterogeneity and individual predisposition to cancer
    • Galvan A, Ioannidis JP, Dragani TA. Beyond genome-wide association studies: genetic heterogeneity and individual predisposition to cancer. Trends Genet 2010;26:132-41.
    • (2010) Trends Genet , vol.26 , pp. 132-141
    • Galvan, A.1    Ioannidis, J.P.2    Dragani, T.A.3
  • 3
    • 0034644185 scopus 로고    scopus 로고
    • Environmental and heritable factors in the causation of cancer-analyses of cohorts of twins from Sweden, Denmark, and Finland
    • Lichtenstein P, Holm NV, Verkasalo PK, et al. Environmental and heritable factors in the causation of cancer-analyses of cohorts of twins from Sweden, Denmark, and Finland. N Engl J Med 2000;343:78-85.
    • (2000) N Engl J Med , vol.343 , pp. 78-85
    • Lichtenstein, P.1    Holm, N.V.2    Verkasalo, P.K.3
  • 4
    • 56249103144 scopus 로고    scopus 로고
    • Inherited susceptibility to common cancers
    • Foulkes WD. Inherited susceptibility to common cancers. N Engl J Med 2008;359:2143-53.
    • (2008) N Engl J Med , vol.359 , pp. 2143-2153
    • Foulkes, W.D.1
  • 5
    • 0030614675 scopus 로고    scopus 로고
    • Intestinal neoplasia in the ApcMin mouse: Independence from the microbial and natural killer (beige locus) status
    • Dove WF, Clipson L, Gould KA, et al. Intestinal neoplasia in the ApcMin mouse: independence from the microbial and natural killer (beige locus) status. Cancer Res 1997;57:812-14.
    • (1997) Cancer Res , vol.57 , pp. 812-814
    • Dove, W.F.1    Clipson, L.2    Gould, K.A.3
  • 6
    • 84867192879 scopus 로고    scopus 로고
    • Intestinal inflammation targets cancer-inducing activity of the microbiota
    • Arthur JC, Perez-Chanona E, Muhlbauer M, et al. Intestinal inflammation targets cancer-inducing activity of the microbiota. Science 2012;338:120-3.
    • (2012) Science , vol.338 , pp. 120-123
    • Arthur, J.C.1    Perez-Chanona, E.2    Muhlbauer, M.3
  • 7
    • 77954730486 scopus 로고    scopus 로고
    • Escherichia coli induces DNA damage in vivo and triggers genomic instability in mammalian cells
    • Cuevas-Ramos G, Petit CR, Marcq I, et al. Escherichia coli induces DNA damage in vivo and triggers genomic instability in mammalian cells. Proc Natl Acad Sci USA 2010;107:11537-42.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 11537-11542
    • Cuevas-Ramos, G.1    Petit, C.R.2    Marcq, I.3
  • 8
    • 84868613705 scopus 로고    scopus 로고
    • Adenoma-linked barrier defects and microbial products drive IL-23/IL-17-mediated tumour growth
    • Grivennikov SI, Wang K, Mucida D, et al. Adenoma-linked barrier defects and microbial products drive IL-23/IL-17-mediated tumour growth. Nature 2012;491:254-8.
    • (2012) Nature , vol.491 , pp. 254-258
    • Grivennikov, S.I.1    Wang, K.2    Mucida, D.3
  • 9
    • 33745593712 scopus 로고    scopus 로고
    • A possible role of Bacteroides fragilis enterotoxin in the aetiology of colorectal cancer
    • Toprak NU, Yagci A, Gulluoglu BM, et al. A possible role of Bacteroides fragilis enterotoxin in the aetiology of colorectal cancer. Clin Microbiol Infect 2006;12:782-6.
    • (2006) Clin Microbiol Infect , vol.12 , pp. 782-786
    • Toprak, N.U.1    Yagci, A.2    Gulluoglu, B.M.3
  • 10
    • 67650299380 scopus 로고    scopus 로고
    • Modulation of the intestinal microbiota alters colitis-associated colorectal cancer susceptibility
    • Uronis JM, Muhlbauer M, Herfarth HH, et al. Modulation of the intestinal microbiota alters colitis-associated colorectal cancer susceptibility. PLoS ONE 2009;4:e6026.
    • (2009) PLoS ONE , vol.4 , pp. e6026
    • Uronis, J.M.1    Muhlbauer, M.2    Herfarth, H.H.3
  • 11
    • 69949120571 scopus 로고    scopus 로고
    • A human colonic commensal promotes colon tumorigenesis via activation of T helper type 17 T cell responses
    • Wu S, Rhee KJ, Albesiano E, et al. A human colonic commensal promotes colon tumorigenesis via activation of T helper type 17 T cell responses. Nat Med 2009;15:1016-22.
    • (2009) Nat Med , vol.15 , pp. 1016-1022
    • Wu, S.1    Rhee, K.J.2    Albesiano, E.3
  • 12
    • 60849136920 scopus 로고    scopus 로고
    • Association between Streptococcus bovis and colon cancer
    • Boleij A, Schaeps RM, Tjalsma H. Association between Streptococcus bovis and colon cancer. J Clin Microbiol 2009;47:516.
    • (2009) J Clin Microbiol , vol.47 , pp. 516
    • Boleij, A.1    Schaeps, R.M.2    Tjalsma, H.3
  • 13
    • 64949184630 scopus 로고    scopus 로고
    • Clostridium septicum aortitis: Report of two cases and review of the literature
    • Seder CW, Kramer M, Long G, et al. Clostridium septicum aortitis: Report of two cases and review of the literature. J Vasc Surg 2009;49:1304-9.
    • (2009) J Vasc Surg , vol.49 , pp. 1304-1309
    • Seder, C.W.1    Kramer, M.2    Long, G.3
  • 14
    • 38549107462 scopus 로고    scopus 로고
    • Culture-independent analysis of the gut microbiota in colorectal cancer and polyposis
    • Scanlan PD, Shanahan F, Clune Y, et al. Culture-independent analysis of the gut microbiota in colorectal cancer and polyposis. Environ Microbiol 2008;10:789-98.
    • (2008) Environ Microbiol , vol.10 , pp. 789-798
    • Scanlan, P.D.1    Shanahan, F.2    Clune, Y.3
  • 15
    • 79551571717 scopus 로고    scopus 로고
    • Microbial dysbiosis in colorectal cancer (CRC) patients
    • Sobhani I, Tap J, Roudot-Thoraval F, et al. Microbial dysbiosis in colorectal cancer (CRC) patients. PLoS ONE 2011;6:e16393.
    • (2011) PLoS ONE , vol.6 , pp. e16393
    • Sobhani, I.1    Tap, J.2    Roudot-Thoraval, F.3
  • 16
    • 84862997111 scopus 로고    scopus 로고
    • Human intestinal lumen and mucosa-associated microbiota in patients with colorectal cancer
    • Chen W, Liu F, Ling Z, et al. Human intestinal lumen and mucosa-associated microbiota in patients with colorectal cancer. PLoS ONE 2012;7:e39743.
    • (2012) PLoS ONE , vol.7 , pp. e39743
    • Chen, W.1    Liu, F.2    Ling, Z.3
  • 17
    • 84856534859 scopus 로고    scopus 로고
    • Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma
    • Castellarin M, Warren RL, Freeman JD, et al. Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma. Genome Res 2012;22:299-306.
    • (2012) Genome Res , vol.22 , pp. 299-306
    • Castellarin, M.1    Warren, R.L.2    Freeman, J.D.3
  • 18
    • 84863022950 scopus 로고    scopus 로고
    • Genomic analysis identifies association of Fusobacterium with colorectal carcinoma
    • Kostic AD, Gevers D, Pedamallu CS, et al. Genomic analysis identifies association of Fusobacterium with colorectal carcinoma. Genome Res 2012;22:292-8.
    • (2012) Genome Res , vol.22 , pp. 292-298
    • Kostic, A.D.1    Gevers, D.2    Pedamallu, C.S.3
  • 19
    • 84882354326 scopus 로고    scopus 로고
    • Fusobacterium nucleatum potentiates intestinal tumorigenesis and modulates the tumor-immune microenvironment
    • Kostic AD, Chun E, Robertson L, et al. Fusobacterium nucleatum Potentiates Intestinal Tumorigenesis and Modulates the Tumor-Immune Microenvironment. Cell Host Microbe 2013;14:207-15.
    • (2013) Cell Host Microbe , vol.14 , pp. 207-215
    • Kostic, A.D.1    Chun, E.2    Robertson, L.3
  • 20
    • 84882334105 scopus 로고    scopus 로고
    • Fusobacterium nucleatum promotes colorectal carcinogenesis by modulating E-cadherin/beta-catenin signaling via its FadA adhesin
    • Rubinstein MR, Wang X, Liu W, et al. Fusobacterium nucleatum promotes colorectal carcinogenesis by modulating E-cadherin/beta-catenin signaling via its FadA adhesin. Cell Host Microbe 2013;14:195-206.
    • (2013) Cell Host Microbe , vol.14 , pp. 195-206
    • Rubinstein, M.R.1    Wang, X.2    Liu, W.3
  • 21
    • 84910116215 scopus 로고    scopus 로고
    • The human gut microbiome as a screening tool for colorectal cancer
    • Zackular JP, Rogers MA, Ruffin MTt, et al. The human gut microbiome as a screening tool for colorectal cancer. Cancer Prev Res (Phila) 2014;7:1112-21.
    • (2014) Cancer Prev Res (Phila) , vol.7 , pp. 1112-1121
    • Zackular, J.P.1    Rogers, M.A.2    MTt, R.3
  • 22
    • 84924026956 scopus 로고    scopus 로고
    • Potential of fecal microbiota for early-stage detection of colorectal cancer
    • Zeller G, Tap J, Voigt AY, et al. Potential of fecal microbiota for early-stage detection of colorectal cancer. Mol Syst Biol 2014;10:766.
    • (2014) Mol Syst Biol , vol.10 , pp. 766
    • Zeller, G.1    Tap, J.2    Voigt, A.Y.3
  • 23
    • 77954818058 scopus 로고    scopus 로고
    • The American joint committee on cancer: The 7th edition of the ajcc cancer staging manual and the future of tnm
    • Edge SB, Compton CC. The American Joint Committee on Cancer: the 7th edition of the AJCC cancer staging manual and the future of TNM. Ann Surg Oncol 2010;17:1471-4.
    • (2010) Ann Surg Oncol , vol.17 , pp. 1471-1474
    • Edge, S.B.1    Compton, C.C.2
  • 24
    • 0030872620 scopus 로고    scopus 로고
    • Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis
    • Godon JJ, Zumstein E, Dabert P, et al. Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis. Appl Environ Microbiol 1997;63:2802-13.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 2802-2813
    • Godon, J.J.1    Zumstein, E.2    Dabert, P.3
  • 25
    • 84867074831 scopus 로고    scopus 로고
    • A metagenome-wide association study of gut microbiota in type 2 diabetes
    • Qin J, Li Y, Cai Z, et al. A metagenome-wide association study of gut microbiota in type 2 diabetes. Nature 2012;490:55-60.
    • (2012) Nature , vol.490 , pp. 55-60
    • Qin, J.1    Li, Y.2    Cai, Z.3
  • 26
    • 84888884475 scopus 로고    scopus 로고
    • Metagenomic species profiling using universal phylogenetic marker genes
    • Sunagawa S, Mende DR, Zeller G, et al. Metagenomic species profiling using universal phylogenetic marker genes. Nat Methods 2013;10:1196-9.
    • (2013) Nat Methods , vol.10 , pp. 1196-1199
    • Sunagawa, S.1    Mende, D.R.2    Zeller, G.3
  • 27
    • 84861898310 scopus 로고    scopus 로고
    • IMG: The Integrated Microbial Genomes database and comparative analysis system
    • Markowitz VM, Chen IM, Palaniappan K, et al. IMG: the Integrated Microbial Genomes database and comparative analysis system. Nucleic Acids Res 2012;40: D115-22.
    • (2012) Nucleic Acids Res , vol.40 , pp. D115-D122
    • Markowitz, V.M.1    Chen, I.M.2    Palaniappan, K.3
  • 28
    • 24344458137 scopus 로고    scopus 로고
    • Feature selection based on mutual information: Criteria of max-dependency, max-relevance, and min-redundancy
    • Peng H, Long F, Ding C. Feature selection based on mutual information: criteria of max-dependency, max-relevance, and min-redundancy. IEEE Trans Pattern Anal Mach Intell 2005;27:1226-38.
    • (2005) IEEE Trans Pattern Anal Mach Intell , vol.27 , pp. 1226-1238
    • Peng, H.1    Long, F.2    Ding, C.3
  • 29
    • 84855339767 scopus 로고    scopus 로고
    • A longitudinal study of serum insulin and glucose levels in relation to colorectal cancer risk among postmenopausal women
    • Kabat GC, Kim MY, Strickler HD, et al. A longitudinal study of serum insulin and glucose levels in relation to colorectal cancer risk among postmenopausal women. Br J Cancer 2012;106:227-32.
    • (2012) Br J Cancer , vol.106 , pp. 227-232
    • Kabat, G.C.1    Kim, M.Y.2    Strickler, H.D.3
  • 30
    • 79960301171 scopus 로고    scopus 로고
    • Blood lipid and lipoprotein concentrations and colorectal cancer risk in the European Prospective Investigation into Cancer and Nutrition
    • van Duijnhoven FJ, Bueno-De-Mesquita HB, Calligaro M, et al. Blood lipid and lipoprotein concentrations and colorectal cancer risk in the European Prospective Investigation into Cancer and Nutrition. Gut 2011;60:1094-102.
    • (2011) Gut , vol.60 , pp. 1094-1102
    • Van Duijnhoven, F.J.1    De-Mesquita, B.H.B.2    Calligaro, M.3
  • 31
    • 84924690678 scopus 로고    scopus 로고
    • Gut microbiome development along the colorectal adenoma-carcinoma sequence
    • Feng Q, Liang S, Jia H, et al. Gut microbiome development along the colorectal adenoma-carcinoma sequence. Nat Commun 2015;6:6528.
    • (2015) Nat Commun , vol.6 , pp. 6528
    • Feng, Q.1    Liang, S.2    Jia, H.3
  • 32
    • 84858983547 scopus 로고    scopus 로고
    • KEGG for integration and interpretation of large-scale molecular data sets
    • Kanehisa M, Goto S, Sato Y, et al. KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Res 2012;40:D109-14.
    • (2012) Nucleic Acids Res , vol.40 , pp. D109-D114
    • Kanehisa, M.1    Goto, S.2    Sato, Y.3
  • 33
    • 31544457307 scopus 로고    scopus 로고
    • Investigations of branched-chain amino acids and their metabolites in animal models of cancer
    • Baracos VE, Mackenzie ML. Investigations of branched-chain amino acids and their metabolites in animal models of cancer. J Nutr 2006; 136:237S-42S.
    • (2006) J Nutr , vol.136 , pp. 42S-237S
    • Baracos, V.E.1    Mackenzie, M.L.2
  • 34
    • 84883553872 scopus 로고    scopus 로고
    • Leucine modulates the effect of Walker factor, a proteolysis-inducing factor-like protein from Walker tumours, on gene expression and cellular activity in C2C12 myotubes
    • Gonçalves EM, Salomão EM, Gomes-Marcondes MCC. Leucine modulates the effect of Walker factor, a proteolysis-inducing factor-like protein from Walker tumours, on gene expression and cellular activity in C2C12 myotubes. Cytokine 2013;64:343-50.
    • (2013) Cytokine , vol.64 , pp. 343-350
    • Gonçalves, E.M.1    Salomão, E.M.2    McC, G.3
  • 35
    • 79959819359 scopus 로고    scopus 로고
    • Solobacterium moorei bacteremia: Identification, antimicrobial susceptibility, and clinical characteristics
    • Pedersen RM, Holt HM, Justesen US. Solobacterium moorei bacteremia: identification, antimicrobial susceptibility, and clinical characteristics. J Clin Microbiol 2011;49:2766-8.
    • (2011) J Clin Microbiol , vol.49 , pp. 2766-2768
    • Pedersen, R.M.1    Holt, H.M.2    Justesen, U.S.3
  • 36
    • 0028524842 scopus 로고
    • Taxonomy, ecology, and pathogenicity of the root canal flora
    • Sundqvist G. Taxonomy, ecology, and pathogenicity of the root canal flora. Oral Surg Oral Med Oral Pathol 1994;78:522-30.
    • (1994) Oral Surg Oral Med Oral Pathol , vol.78 , pp. 522-530
    • Sundqvist, G.1
  • 38
    • 77950251400 scopus 로고    scopus 로고
    • A human gut microbial gene catalogue established by metagenomic sequencing
    • Qin J, Li R, Raes J, et al. A human gut microbial gene catalogue established by metagenomic sequencing. Nature 2010;464:59-65.
    • (2010) Nature , vol.464 , pp. 59-65
    • Qin, J.1    Li, R.2    Raes, J.3
  • 39
    • 84905730165 scopus 로고    scopus 로고
    • An integrated catalog of reference genes in the human gut microbiome
    • Li J, Jia H, Cai X, et al. An integrated catalog of reference genes in the human gut microbiome. Nat Biotechnol 2014;32:834-41.
    • (2014) Nat Biotechnol , vol.32 , pp. 834-841
    • Li, J.1    Jia, H.2    Cai, X.3
  • 40
    • 84891473723 scopus 로고    scopus 로고
    • Human gut microbiome and risk for colorectal cancer
    • Ahn J, Sinha R, Pei Z, et al. Human gut microbiome and risk for colorectal cancer. J Natl Cancer Inst 2013;105:1907-11.
    • (2013) J Natl Cancer Inst , vol.105 , pp. 1907-1911
    • Ahn, J.1    Sinha, R.2    Pei, Z.3
  • 41
    • 33644700003 scopus 로고    scopus 로고
    • Toward automatic reconstruction of a highly resolved tree of life
    • Ciccarelli FD, Doerks T, von Mering C, et al. Toward automatic reconstruction of a highly resolved tree of life. Science 2006;311:1283-7.
    • (2006) Science , vol.311 , pp. 1283-1287
    • Ciccarelli, F.D.1    Doerks, T.2    Von Mering, C.3
  • 42
    • 84856521514 scopus 로고    scopus 로고
    • Dirichlet multinomial mixtures: Generative models for microbial metagenomics
    • Holmes I, Harris K, Quince C. Dirichlet multinomial mixtures: generative models for microbial metagenomics. PLoS ONE 2012;7:e30126.
    • (2012) PLoS ONE , vol.7 , pp. e30126
    • Holmes, I.1    Harris, K.2    Quince, C.3
  • 43
    • 84900535804 scopus 로고    scopus 로고
    • Dynamics and associations of microbial community types across the human body
    • Ding T, Schloss PD. Dynamics and associations of microbial community types across the human body. Nature 2014;509:357-60.
    • (2014) Nature , vol.509 , pp. 357-360
    • Ding, T.1    Schloss, P.D.2
  • 44
    • 0033989580 scopus 로고    scopus 로고
    • Peptostreptococcus micros coaggregates with Fusobacterium nucleatum and non-encapsulated Porphyromonas gingivalis
    • Kremer BH, van Steenbergen TJ. Peptostreptococcus micros coaggregates with Fusobacterium nucleatum and non-encapsulated Porphyromonas gingivalis. FEMS Microbiol Lett 2000;182:57-62.
    • (2000) FEMS Microbiol Lett , vol.182 , pp. 57-62
    • Kremer, B.H.1    Van Steenbergen, T.J.2
  • 45
    • 14944358417 scopus 로고    scopus 로고
    • Binding of Actinobacillus actinomycetemcomitans lipopolysaccharides to Peptostreptococcus micros stimulates tumor necrosis factor alpha production by macrophage-like cells
    • Yoshioka M, Grenier D, Mayrand D. Binding of Actinobacillus actinomycetemcomitans lipopolysaccharides to Peptostreptococcus micros stimulates tumor necrosis factor alpha production by macrophage-like cells. Oral Microbiol Immunol 2005;20:118-21.
    • (2005) Oral Microbiol Immunol , vol.20 , pp. 118-121
    • Yoshioka, M.1    Grenier, D.2    Mayrand, D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.