메뉴 건너뛰기




Volumn 119, Issue 3, 2017, Pages 315-326

A simple ImageJ macro tool for analyzing mitochondrial network morphology in mammalian cell culture

Author keywords

Fission; Fusion; Image analysis; Mitochondria; Mitochondrial dynamics; Mitochondrial network

Indexed keywords

ANIMAL CELL; ARTICLE; CONTROLLED STUDY; FIBROBLAST; IMAGE ANALYSIS; IMAGE PROCESSING; IMAGE QUALITY; IMAGING SOFTWARE; MAMMAL CELL; MITOCHONDRIAL DYNAMICS; MITOCHONDRIAL NETWORK; MITOCHONDRION; MOUSE; MYOBLAST; NONHUMAN; ANIMAL; CELL CULTURE TECHNIQUE; CELL LINE; CYTOLOGY; HUMAN; PROCEDURES; SOFTWARE; STAINING; ULTRASTRUCTURE;

EID: 85017426795     PISSN: 00651281     EISSN: 16180372     Source Type: Journal    
DOI: 10.1016/j.acthis.2017.03.001     Document Type: Article
Times cited : (535)

References (41)
  • 2
    • 85017444801 scopus 로고    scopus 로고
    • AnalyzeSkeleton [WWW Document]
    • ImageJ
    • Arganda-Carreras, I., AnalyzeSkeleton [WWW Document]. 2016, ImageJ http://imagej.net/AnalyzeSkeleton.
    • (2016)
    • Arganda-Carreras, I.1
  • 4
    • 84891643550 scopus 로고    scopus 로고
    • Metabolic stress and disorders related to alterations in mitochondrial fission or fusion
    • Babbar, M., Sheikh, M.S., Metabolic stress and disorders related to alterations in mitochondrial fission or fusion. Mol. Cell. Pharmacol. 5 (2013), 109–133, 10.4255/mcpharmacol.13.11.
    • (2013) Mol. Cell. Pharmacol. , vol.5 , pp. 109-133
    • Babbar, M.1    Sheikh, M.S.2
  • 6
    • 77957851365 scopus 로고    scopus 로고
    • Inhibition of Drp1-dependent mitochondrial fragmentation and apoptosis by a polypeptide antagonist of calcineurin
    • Cereghetti, G.M., Costa, V., Scorrano, L., Inhibition of Drp1-dependent mitochondrial fragmentation and apoptosis by a polypeptide antagonist of calcineurin. Cell Death Differ. 17 (2010), 1785–1794, 10.1038/cdd.2010.61.
    • (2010) Cell Death Differ. , vol.17 , pp. 1785-1794
    • Cereghetti, G.M.1    Costa, V.2    Scorrano, L.3
  • 7
    • 22544451586 scopus 로고    scopus 로고
    • Disruption of fusion results in mitochondrial heterogeneity and dysfunction
    • Chen, H., Chomyn, A., Chan, D.C., Disruption of fusion results in mitochondrial heterogeneity and dysfunction. J. Biol. Chem. 280 (2005), 26185–26192, 10.1074/jbc.M503062200.
    • (2005) J. Biol. Chem. , vol.280 , pp. 26185-26192
    • Chen, H.1    Chomyn, A.2    Chan, D.C.3
  • 8
    • 77951737783 scopus 로고    scopus 로고
    • Mitochondrial fusion is required for mtdna stability in skeletal muscle and tolerance of mtDNA mutations
    • Chen, H., Vermulst, M., Wang, Y.E., Chomyn, A., Prolla, T.A., McCaffery, J.M., Chan, D.C., Mitochondrial fusion is required for mtdna stability in skeletal muscle and tolerance of mtDNA mutations. Cell 141 (2010), 280–289, 10.1016/j.cell.2010.02.026.
    • (2010) Cell , vol.141 , pp. 280-289
    • Chen, H.1    Vermulst, M.2    Wang, Y.E.3    Chomyn, A.4    Prolla, T.A.5    McCaffery, J.M.6    Chan, D.C.7
  • 9
    • 85017426080 scopus 로고    scopus 로고
    • Class UnsharpMask, n.d. Class UnsharpMask [WWW Document]. ImageJ Dev. API Doc.
    • Class UnsharpMask, n.d. Class UnsharpMask [WWW Document]. ImageJ Dev. API Doc. https://imagej.nih.gov/ij/developer/api/ij/plugin/filter/UnsharpMask.html.
  • 10
    • 85017413138 scopus 로고    scopus 로고
    • Mitochondrial Morphology [WWW Document]
    • ImageJ Wiki
    • Dagda, R.K., Mitochondrial Morphology [WWW Document]. 2010, ImageJ Wiki http://imagejdocu.tudor.lu/doku.php?id=plugin:morphology:mitochondrial_morphology_macro_plug-in:start.
    • (2010)
    • Dagda, R.K.1
  • 12
    • 84870225126 scopus 로고    scopus 로고
    • Mitochondrial morphology – emerging role in bioenergetics
    • Galloway, C.a., Lee, H., Yoon, Y., Mitochondrial morphology – emerging role in bioenergetics. Free Radic. Biol. Med. 53 (2012), 1–11, 10.1016/j.freeradbiomed.2012.09.035.
    • (2012) Free Radic. Biol. Med. , vol.53 , pp. 1-11
    • Galloway, C.A.1    Lee, H.2    Yoon, Y.3
  • 13
    • 84969279320 scopus 로고    scopus 로고
    • pgirmess: Data Analysis in Ecology
    • Giraudoux, P., pgirmess: Data Analysis in Ecology. 2016.
    • (2016)
    • Giraudoux, P.1
  • 14
    • 0024622227 scopus 로고
    • Parallel thinning with two-subiteration algorithms
    • Guo, Z., Hall, R.W., Parallel thinning with two-subiteration algorithms. Commun. ACM 32 (1989), 359–373, 10.1145/62065.62074.
    • (1989) Commun. ACM , vol.32 , pp. 359-373
    • Guo, Z.1    Hall, R.W.2
  • 15
    • 85017411944 scopus 로고    scopus 로고
    • Multiplexed high-content analysis of mitochondrial morphofunction using live-cell microscopy
    • Iannetti, E.F., Smeitink, J.A.M., Beyrath, J., Willems, P.H.G.M., Koopman, W.J.H., Multiplexed high-content analysis of mitochondrial morphofunction using live-cell microscopy. Nat. Protoc. 11 (2016), 1693–1710.
    • (2016) Nat. Protoc. , vol.11 , pp. 1693-1710
    • Iannetti, E.F.1    Smeitink, J.A.M.2    Beyrath, J.3    Willems, P.H.G.M.4    Koopman, W.J.H.5
  • 16
    • 33746299692 scopus 로고    scopus 로고
    • Regulation of mitochondrial morphology through proteolytic cleavage of OPA1
    • Ishihara, N., Fujita, Y., Oka, T., Mihara, K., Regulation of mitochondrial morphology through proteolytic cleavage of OPA1. EMBO J. 25 (2006), 2966–2977, 10.1038/sj.emboj.7601184.
    • (2006) EMBO J. , vol.25 , pp. 2966-2977
    • Ishihara, N.1    Fujita, Y.2    Oka, T.3    Mihara, K.4
  • 17
    • 30344453413 scopus 로고    scopus 로고
    • Simultaneous quantitative measurement and automated analysis of mitochondrial morphology, mass, potential, and motility in living human skin fibroblasts
    • Koopman, W.J.H., Visch, H.J., Smeitink, J.A.M., Willems, P.H.G.M., Simultaneous quantitative measurement and automated analysis of mitochondrial morphology, mass, potential, and motility in living human skin fibroblasts. Cytometry A 69 (2006), 1–12, 10.1002/cyto.a.20198.
    • (2006) Cytometry A , vol.69 , pp. 1-12
    • Koopman, W.J.H.1    Visch, H.J.2    Smeitink, J.A.M.3    Willems, P.H.G.M.4
  • 18
    • 85017433741 scopus 로고    scopus 로고
    • Auto Threshold [WWW Document]
    • ImageJ
    • Landini, G., Auto Threshold [WWW Document]. 2016, ImageJ http://imagej.net/Auto_Threshold.
    • (2016)
    • Landini, G.1
  • 19
    • 84887621784 scopus 로고    scopus 로고
    • Metabolic regulation of the cell cycle
    • Lee, I.H., Finkel, T., Metabolic regulation of the cell cycle. Curr. Opin. Cell Biol. 25 (2013), 724–729, 10.1016/j.ceb.2013.07.002.
    • (2013) Curr. Opin. Cell Biol. , vol.25 , pp. 724-729
    • Lee, I.H.1    Finkel, T.2
  • 20
    • 0036906665 scopus 로고    scopus 로고
    • Mitochondrial fusion in human cells is efficient, requires the inner membrane potential, and is mediated by mitofusins
    • Legros, F., Lombès, A., Frachon, P., Rojo, M., Mitochondrial fusion in human cells is efficient, requires the inner membrane potential, and is mediated by mitofusins. Mol. Biol. Cell 13 (2002), 4343–4354, 10.1091/mbc.E02.
    • (2002) Mol. Biol. Cell , vol.13 , pp. 4343-4354
    • Legros, F.1    Lombès, A.2    Frachon, P.3    Rojo, M.4
  • 21
    • 84913580346 scopus 로고    scopus 로고
    • Quantitative analysis of mitochondrial morphology and membrane potential in living cells using high-content imaging, machine learning, and morphological binning
    • Leonard, A.P., Cameron, R.B., Speiser, J.L., Wolf, B.J., Peterson, Y.K., Schnellmann, R.G., Beeson, C.C., Rohrer, B., Quantitative analysis of mitochondrial morphology and membrane potential in living cells using high-content imaging, machine learning, and morphological binning. Biochim. Biophys. Acta Mol. Cell Res. 1853 (2015), 348–360, 10.1016/j.bbamcr.2014.11.002.
    • (2015) Biochim. Biophys. Acta Mol. Cell Res. , vol.1853 , pp. 348-360
    • Leonard, A.P.1    Cameron, R.B.2    Speiser, J.L.3    Wolf, B.J.4    Peterson, Y.K.5    Schnellmann, R.G.6    Beeson, C.C.7    Rohrer, B.8
  • 22
    • 84859259201 scopus 로고    scopus 로고
    • Mytoe: automatic analysis of mitochondrial dynamics
    • Lihavainen, E., Mäkelä, J., Spelbrink, J.N., Ribeiro, A.S., Mytoe: automatic analysis of mitochondrial dynamics. Bioinformatics 28 (2012), 1050–1051, 10.1093/bioinformatics/bts073.
    • (2012) Bioinformatics , vol.28 , pp. 1050-1051
    • Lihavainen, E.1    Mäkelä, J.2    Spelbrink, J.N.3    Ribeiro, A.S.4
  • 23
    • 80052711240 scopus 로고    scopus 로고
    • Altered fusion dynamics underlie unique morphological changes in mitochondria during hypoxia-reoxygenation stress
    • Liu, X., Hajnóczky, G., Altered fusion dynamics underlie unique morphological changes in mitochondria during hypoxia-reoxygenation stress. Cell Death Differ. 18 (2011), 1561–1572, 10.1038/cdd.2011.13.
    • (2011) Cell Death Differ. , vol.18 , pp. 1561-1572
    • Liu, X.1    Hajnóczky, G.2
  • 24
    • 84995485079 scopus 로고    scopus 로고
    • The mitochondria-targeted imidazole substituted oleic acid “TPP-IOA” affects mitochondrial bioenergetics and its protective efficacy in cells is influenced by cellular dependence on aerobic metabolism
    • Maddalena, L.A., Ghelfi, M., Atkinson, J., Stuart, J.A., The mitochondria-targeted imidazole substituted oleic acid “TPP-IOA” affects mitochondrial bioenergetics and its protective efficacy in cells is influenced by cellular dependence on aerobic metabolism. Biochim. Biophys. Acta Bioenerg. 1858 (2017), 73–85, 10.1016/j.bbabio.2016.11.005.
    • (2017) Biochim. Biophys. Acta Bioenerg. , vol.1858 , pp. 73-85
    • Maddalena, L.A.1    Ghelfi, M.2    Atkinson, J.3    Stuart, J.A.4
  • 25
    • 67749089562 scopus 로고    scopus 로고
    • A hyperfused mitochondrial state achieved at G1-S regulates cyclin E buildup and entry into S phase
    • Mitra, K., Wunder, C., Roysam, B., Lin, G., Lippincott-Schwartz, J., A hyperfused mitochondrial state achieved at G1-S regulates cyclin E buildup and entry into S phase. Proc. Natl. Acad. Sci. U. S. A. 106 (2009), 11960–11965, 10.1073/pnas.0904875106.
    • (2009) Proc. Natl. Acad. Sci. U. S. A. , vol.106 , pp. 11960-11965
    • Mitra, K.1    Wunder, C.2    Roysam, B.3    Lin, G.4    Lippincott-Schwartz, J.5
  • 27
  • 28
    • 85017424243 scopus 로고    scopus 로고
    • R Core Team,. R: A Language and Environment for Statistical Computing.
    • R Core Team, 2016. R: A Language and Environment for Statistical Computing.
    • (2016)
  • 29
    • 0018004847 scopus 로고
    • Picture thresholding using an iterative slection method
    • Ridler, T.W., Calvard, S., Picture thresholding using an iterative slection method. IEEE Trans. Syst. Man Cybern. 8 (1978), 630–632, 10.1109/TSMC.1978.4310039.
    • (1978) IEEE Trans. Syst. Man Cybern. , vol.8 , pp. 630-632
    • Ridler, T.W.1    Calvard, S.2
  • 31
    • 85017463541 scopus 로고    scopus 로고
    • Cellular Mechanisms of Resveratrol's Interaction with Mitochondrial Reactive Oxygen Species Metabolism
    • Robb, E.L., Cellular Mechanisms of Resveratrol's Interaction with Mitochondrial Reactive Oxygen Species Metabolism. 2013.
    • (2013)
    • Robb, E.L.1
  • 32
    • 0842325793 scopus 로고    scopus 로고
    • Energy substrate modulates mitochondrial structure and oxidative capacity in cancer cells
    • Rossignol, R., Gilkerson, R., Aggeler, R., Yamagata, K., Remington, S.J., Capaldi, R.A., Energy substrate modulates mitochondrial structure and oxidative capacity in cancer cells. Cancer Res. 64 (2004), 985–993, 10.1158/0008-5472.CAN-03-1101.
    • (2004) Cancer Res. , vol.64 , pp. 985-993
    • Rossignol, R.1    Gilkerson, R.2    Aggeler, R.3    Yamagata, K.4    Remington, S.J.5    Capaldi, R.A.6
  • 33
    • 85057732262 scopus 로고    scopus 로고
    • Enhance Local Contrast (CLAHE) [WWW Document]
    • ImageJ
    • Saalfeld, S., Enhance Local Contrast (CLAHE) [WWW Document]. 2010, ImageJ http://imagej.net/Enhance_Local_Contrast_(CLAHE).
    • (2010)
    • Saalfeld, S.1
  • 34
    • 85008263079 scopus 로고    scopus 로고
    • Fueling the cell division cycle
    • Salazar-Roa, M., Malumbres, M., Fueling the cell division cycle. Trends Cell Biol. xx (2016), 1–13, 10.1016/j.tcb.2016.08.009.
    • (2016) Trends Cell Biol. , vol.20 , pp. 1-13
    • Salazar-Roa, M.1    Malumbres, M.2
  • 36
    • 84863205849 scopus 로고    scopus 로고
    • NIH Image to ImageJ: 25 years of image analysis
    • Schneider, C.A., Rasband, W.S., Eliceiri, K.W., NIH Image to ImageJ: 25 years of image analysis. Nat. Methods 9 (2012), 671–675.
    • (2012) Nat. Methods , vol.9 , pp. 671-675
    • Schneider, C.A.1    Rasband, W.S.2    Eliceiri, K.W.3
  • 37
    • 84959541007 scopus 로고    scopus 로고
    • Early onset Charcot-Marie-Tooth neuropathy type 2A and severe developmental delay: expanding the clinical phenotype of MFN2-related neuropathy
    • Tufano, M., Cappuccio, G., Terrone, G., Manganelli, F., Pisciotta, C., Geroldi, A., Capponi, S., Del Giudice, E., Early onset Charcot-Marie-Tooth neuropathy type 2A and severe developmental delay: expanding the clinical phenotype of MFN2-related neuropathy. J. Peripher. Nerv. Syst. 20 (2015), 415–418, 10.1111/jns.12148.
    • (2015) J. Peripher. Nerv. Syst. , vol.20 , pp. 415-418
    • Tufano, M.1    Cappuccio, G.2    Terrone, G.3    Manganelli, F.4    Pisciotta, C.5    Geroldi, A.6    Capponi, S.7    Del Giudice, E.8
  • 39
    • 84938775042 scopus 로고    scopus 로고
    • MitoLoc: a method for the simultaneous quantification of mitochondrial network morphology and membrane potential in single cells
    • Vowinckel, J., Hartl, J., Butler, R., Ralser, M., MitoLoc: a method for the simultaneous quantification of mitochondrial network morphology and membrane potential in single cells. Mitochondrion 24 (2015), 77–86, 10.1016/j.mito.2015.07.001.
    • (2015) Mitochondrion , vol.24 , pp. 77-86
    • Vowinckel, J.1    Hartl, J.2    Butler, R.3    Ralser, M.4
  • 40
    • 77749296886 scopus 로고    scopus 로고
    • ggplot2: Elegant Graphics for Data Analysis
    • Springer-Verlag New York
    • Wickham, H., ggplot2: Elegant Graphics for Data Analysis. 2009, Springer-Verlag, New York.
    • (2009)
    • Wickham, H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.