-
1
-
-
84860741715
-
Mutations in NSUN2 cause autosomal-recessive intellectual disability
-
Abbasi-Moheb, L., et al. (2012). Mutations in NSUN2 cause autosomal-recessive intellectual disability. Am. J. Hum. Genet. 90: 847–855.
-
(2012)
Am. J. Hum. Genet.
, vol.90
, pp. 847-855
-
-
Abbasi-Moheb, L.1
-
2
-
-
46449083572
-
Bringing order to translation: The contributions of transfer RNA anticodon-domain modifications
-
Agris, P.F. (2008). Bringing order to translation: the contributions of transfer RNA anticodon-domain modifications. EMBO Rep. 9: 629–635.
-
(2008)
EMBO Rep
, vol.9
, pp. 629-635
-
-
Agris, P.F.1
-
3
-
-
29544450711
-
Rapid tRNA decay can result from lack of nonessential modifications
-
Alexandrov, A., Chernyakov, I., Gu, W., Hiley, S.L., Hughes, T.R., Grayhack, E.J., and Phizicky, E.M. (2006). Rapid tRNA decay can result from lack of nonessential modifications. Mol. Cell 21: 87–96.
-
(2006)
Mol. Cell
, vol.21
, pp. 87-96
-
-
Alexandrov, A.1
Chernyakov, I.2
Gu, W.3
Hiley, S.L.4
Hughes, T.R.5
Grayhack, E.J.6
Phizicky, E.M.7
-
4
-
-
0042768158
-
Genome-wide insertional mutagenesis of Arabidopsis thaliana
-
Alonso, J.M., et al. (2003). Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301: 653–657.
-
(2003)
Science
, vol.301
, pp. 653-657
-
-
Alonso, J.M.1
-
5
-
-
84894516032
-
Long non-coding RNAs as targets for cytosine methylation
-
Amort, T., Soulière, M.F., Wille, A., Jia, X.Y., Fiegl, H., Wörle, H., Micura, R., and Lusser, A. (2013). Long non-coding RNAs as targets for cytosine methylation. RNA Biol. 10: 1003–1008.
-
(2013)
RNA Biol
, vol.10
, pp. 1003-1008
-
-
Amort, T.1
Soulière, M.F.2
Wille, A.3
Jia, X.Y.4
Fiegl, H.5
Wörle, H.6
Micura, R.7
Lusser, A.8
-
6
-
-
84875141476
-
The human tRNA m (5) C methyltransferase Misu is multisite-specific
-
Auxilien, S., Guérineau, V., Szweykowska-Kulińska, Z., and Golinelli-Pimpaneau, B. (2012). The human tRNA m (5) C methyltransferase Misu is multisite-specific. RNA Biol. 9: 1331–1338.
-
(2012)
RNA Biol
, vol.9
, pp. 1331-1338
-
-
Auxilien, S.1
Guérineau, V.2
Szweykowska-Kulińska, Z.3
Golinelli-Pimpaneau, B.4
-
7
-
-
84871235870
-
Pmt1, a Dnmt2 homolog in Schizosaccharomyces pombe, mediates tRNA methylation in response to nutrient signaling
-
Becker, M., Müller, S., Nellen, W., Jurkowski, T.P., Jeltsch, A., and Ehrenhofer-Murray, A.E. (2012). Pmt1, a Dnmt2 homolog in Schizosaccharomyces pombe, mediates tRNA methylation in response to nutrient signaling. Nucleic Acids Res. 40: 11648–11658.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 11648-11658
-
-
Becker, M.1
Müller, S.2
Nellen, W.3
Jurkowski, T.P.4
Jeltsch, A.5
Ehrenhofer-Murray, A.E.6
-
8
-
-
0032037505
-
Analysis of cell division and elongation underlying the developmental acceleration of root growth in Arabidopsis thaliana
-
Beemster, G.T., and Baskin, T.I. (1998). Analysis of cell division and elongation underlying the developmental acceleration of root growth in Arabidopsis thaliana. Plant Physiol. 116: 1515–1526.
-
(1998)
Plant Physiol
, vol.116
, pp. 1515-1526
-
-
Beemster, G.T.1
Baskin, T.I.2
-
9
-
-
84908153517
-
Aberrant methylation of tRNAs links cellular stress to neuro-developmental disorders
-
Blanco, S., et al. (2014). Aberrant methylation of tRNAs links cellular stress to neuro-developmental disorders. EMBO J. 33: 2020–2039.
-
(2014)
EMBO J
, vol.33
, pp. 2020-2039
-
-
Blanco, S.1
-
10
-
-
84855261134
-
The RNA-methyltransferase Misu (NSun2) poises epidermal stem cells to differentiate
-
Blanco, S., Kurowski, A., Nichols, J., Watt, F.M., Benitah, S.A., and Frye, M. (2011). The RNA-methyltransferase Misu (NSun2) poises epidermal stem cells to differentiate. PLoS Genet. 7: e1002403.
-
(2011)
Plos Genet
, vol.7
-
-
Blanco, S.1
Kurowski, A.2
Nichols, J.3
Watt, F.M.4
Benitah, S.A.5
Frye, M.6
-
11
-
-
84905049901
-
Trimmomatic: A flexible trimmer for Illumina sequence data
-
Bolger, A.M., Lohse, M., and Usadel, B. (2014). Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30: 2114–2120.
-
(2014)
Bioinformatics
, vol.30
, pp. 2114-2120
-
-
Bolger, A.M.1
Lohse, M.2
Usadel, B.3
-
12
-
-
84939191187
-
Conservation of tRNA and rRNA 5-methylcytosine in the kingdom Plantae
-
Burgess, A.L., David, R., and Searle, I.R. (2015). Conservation of tRNA and rRNA 5-methylcytosine in the kingdom Plantae. BMC Plant Biol. 15: 199.
-
(2015)
BMC Plant Biol
, vol.15
, pp. 199
-
-
Burgess, A.L.1
David, R.2
Searle, I.R.3
-
13
-
-
78650683942
-
A quantitative systems approach reveals dynamic control of tRNA modifications during cellular stress
-
Chan, C.T., Dyavaiah, M., DeMott, M.S., Taghizadeh, K., Dedon, P.C., and Begley, T.J. (2010). A quantitative systems approach reveals dynamic control of tRNA modifications during cellular stress. PLoS Genet. 6: e1001247.
-
(2010)
Plos Genet
, vol.6
-
-
Chan, C.T.1
Dyavaiah, M.2
Demott, M.S.3
Taghizadeh, K.4
Dedon, P.C.5
Begley, T.J.6
-
14
-
-
84864828979
-
Reprogramming of tRNA modifications controls the oxidative stress response by codonbiased translation of proteins
-
Chan, C.T.Y., Pang, Y.L.J., Deng, W., Babu, I.R., Dyavaiah, M., Begley, T.J., and Dedon, P.C. (2012). Reprogramming of tRNA modifications controls the oxidative stress response by codonbiased translation of proteins. Nat. Commun. 3: 937.
-
(2012)
Nat. Commun.
, vol.3
, pp. 937
-
-
Chan, C.T.Y.1
Pang, Y.L.J.2
Deng, W.3
Babu, I.R.4
Dyavaiah, M.5
Begley, T.J.6
Dedon, P.C.7
-
15
-
-
77956458716
-
Transfer RNA modifications and genes for modifying enzymes in Arabidopsis thaliana
-
Chen, P., Jäger, G., and Zheng, B. (2010). Transfer RNA modifications and genes for modifying enzymes in Arabidopsis thaliana. BMC Plant Biol. 10: 201.
-
(2010)
BMC Plant Biol
, vol.10
, pp. 201
-
-
Chen, P.1
Jäger, G.2
Zheng, B.3
-
17
-
-
0142245636
-
A Gateway cloning vector set for high-throughput functional analysis of genes in planta
-
Curtis, M.D., and Grossniklaus, U. (2003). A Gateway cloning vector set for high-throughput functional analysis of genes in planta. Plant Physiol. 133: 462–469.
-
(2003)
Plant Physiol
, vol.133
, pp. 462-469
-
-
Curtis, M.D.1
Grossniklaus, U.2
-
18
-
-
63049126127
-
Protocol: Streamlined sub-protocols for floral-dip transformation and selection of transformants in Arabidopsis thaliana
-
Davis, A.M., Hall, A., Millar, A.J., Darrah, C., and Davis, S.J. (2009). Protocol: Streamlined sub-protocols for floral-dip transformation and selection of transformants in Arabidopsis thaliana. Plant Methods 5: 3.
-
(2009)
Plant Methods
, vol.5
, pp. 3
-
-
Davis, A.M.1
Hall, A.2
Millar, A.J.3
Darrah, C.4
Davis, S.J.5
-
19
-
-
0029933584
-
Control of root growth and development by cyclin expression
-
Doerner, P., Jørgensen, J.E., You, R., Steppuhn, J., and Lamb, C. (1996). Control of root growth and development by cyclin expression. Nature 380: 520–523.
-
(1996)
Nature
, vol.380
, pp. 520-523
-
-
Doerner, P.1
Jørgensen, J.E.2
You, R.3
Steppuhn, J.4
Lamb, C.5
-
20
-
-
84879642219
-
Transcriptome-wide mapping of 5-methylcytidine RNA modifications in bacteria, archaea, and yeast reveals m5C within archaeal mRNAs
-
Edelheit, S., Schwartz, S., Mumbach, M.R., Wurtzel, O., and Sorek, R. (2013). Transcriptome-wide mapping of 5-methylcytidine RNA modifications in bacteria, archaea, and yeast reveals m5C within archaeal mRNAs. PLoS Genet. 9: e1003602.
-
(2013)
Plos Genet
, vol.9
-
-
Edelheit, S.1
Schwartz, S.2
Mumbach, M.R.3
Wurtzel, O.4
Sorek, R.5
-
21
-
-
60849139395
-
GOrilla: A tool for discovery and visualization of enriched GO terms in ranked gene lists
-
Eden, E., Navon, R., Steinfeld, I., Lipson, D., and Yakhini, Z. (2009). GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists. BMC Bioinformatics 10: 48.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 48
-
-
Eden, E.1
Navon, R.2
Steinfeld, I.3
Lipson, D.4
Yakhini, Z.5
-
22
-
-
84904700239
-
Whole exome sequencing unravels dis-ease-causing genes in consanguineous families in Qatar
-
Fahiminiya, S., et al. (2014). Whole exome sequencing unravels dis-ease-causing genes in consanguineous families in Qatar. Clin. Genet. 86: 134–141.
-
(2014)
Clin. Genet.
, vol.86
, pp. 134-141
-
-
Fahiminiya, S.1
-
23
-
-
84907198762
-
A cluster of methylations in the domain IV of 25S rRNA is required for ribosome stability
-
Gigova, A., Duggimpudi, S., Pollex, T., Schaefer, M., and Košs, M. (2014). A cluster of methylations in the domain IV of 25S rRNA is required for ribosome stability. RNA 20: 1632–1644.
-
(2014)
RNA
, vol.20
, pp. 1632-1644
-
-
Gigova, A.1
Duggimpudi, S.2
Pollex, T.3
Schaefer, M.4
Košs, M.5
-
24
-
-
31144449613
-
Methylation of tRNAAsp by the DNA methyltransferase homolog Dnmt2
-
Goll, M.G., Kirpekar, F., Maggert, K.A., Yoder, J.A., Hsieh, C.L., Zhang, X., Golic, K.G., Jacobsen, S.E., and Bestor, T.H. (2006). Methylation of tRNAAsp by the DNA methyltransferase homolog Dnmt2. Science 311: 395–398.
-
(2006)
Science
, vol.311
, pp. 395-398
-
-
Goll, M.G.1
Kirpekar, F.2
Maggert, K.A.3
Yoder, J.A.4
Hsieh, C.L.5
Zhang, X.6
Golic, K.G.7
Jacobsen, S.E.8
Bestor, T.H.9
-
25
-
-
0342803566
-
PGreen: A versatile and flexible binary Ti vector for Agrobacterium-mediated plant transformation
-
Hellens, R.P., Edwards, E.A., Leyland, N.R., Bean, S., and Mullineaux, P.M. (2000). pGreen: a versatile and flexible binary Ti vector for Agrobacterium-mediated plant transformation. Plant Mol. Biol. 42: 819–832.
-
(2000)
Plant Mol. Biol.
, vol.42
, pp. 819-832
-
-
Hellens, R.P.1
Edwards, E.A.2
Leyland, N.R.3
Bean, S.4
Mullineaux, P.M.5
-
26
-
-
32644447756
-
Post-transcriptional nucleotide modification and alternative folding of RNA
-
Helm, M. (2006). Post-transcriptional nucleotide modification and alternative folding of RNA. Nucleic Acids Res. 34: 721–733.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 721-733
-
-
Helm, M.1
-
27
-
-
0031022962
-
Nop2p is required for pre-rRNA processing and 60S ribosome subunit synthesis in yeast
-
Hong, B., Brockenbrough, J.S., Wu, P., and Aris, J.P. (1997). Nop2p is required for pre-rRNA processing and 60S ribosome subunit synthesis in yeast. Mol. Cell. Biol. 17: 378–388.
-
(1997)
Mol. Cell. Biol.
, vol.17
, pp. 378-388
-
-
Hong, B.1
Brockenbrough, J.S.2
Wu, P.3
Aris, J.P.4
-
28
-
-
84888791449
-
Characterizing 5-methylcytosine in the mammalian epitranscriptome
-
Hussain, S., Aleksic, J., Blanco, S., Dietmann, S., and Frye, M. (2013a). Characterizing 5-methylcytosine in the mammalian epitranscriptome. Genome Biol. 14: 215.
-
(2013)
Genome Biol
, vol.14
, pp. 215
-
-
Hussain, S.1
Aleksic, J.2
Blanco, S.3
Dietmann, S.4
Frye, M.5
-
29
-
-
84880791572
-
NSun2-mediated cytosine-5 methylation of vault noncoding RNA determines its processing into regulatory small RNAs
-
Hussain, S., Sajini, A.A., Blanco, S., Dietmann, S., Lombard, P., Sugimoto, Y., Paramor, M., Gleeson, J.G., Odom, D.T., Ule, J., and Frye, M. (2013b). NSun2-mediated cytosine-5 methylation of vault noncoding RNA determines its processing into regulatory small RNAs. Cell Reports 4: 255–261.
-
(2013)
Cell Reports
, vol.4
, pp. 255-261
-
-
Hussain, S.1
Sajini, A.A.2
Blanco, S.3
Dietmann, S.4
Lombard, P.5
Sugimoto, Y.6
Paramor, M.7
Gleeson, J.G.8
Odom, D.T.9
Ule, J.10
Frye, M.11
-
30
-
-
84876304441
-
The mouse cytosine-5 RNA methyltransferase NSun2 is a component of the chromatoid body and required for testis differentiation
-
Hussain, S., Tuorto, F., Menon, S., Blanco, S., Cox, C., Flores, J.V., Watt, S., Kudo, N.R., Lyko, F., and Frye, M. (2013c). The mouse cytosine-5 RNA methyltransferase NSun2 is a component of the chromatoid body and required for testis differentiation. Mol. Cell. Biol. 33: 1561–1570.
-
(2013)
Mol. Cell. Biol.
, vol.33
, pp. 1561-1570
-
-
Hussain, S.1
Tuorto, F.2
Menon, S.3
Blanco, S.4
Cox, C.5
Flores, J.V.6
Watt, S.7
Kudo, N.R.8
Lyko, F.9
Frye, M.10
-
31
-
-
84871436566
-
Transfer RNA modifications: Nature’s combinatorial chemistry playground
-
Jackman, J.E., and Alfonzo, J.D. (2013). Transfer RNA modifications: nature’s combinatorial chemistry playground. Wiley Interdiscip. Rev. RNA 4: 35–48.
-
(2013)
Wiley Interdiscip. Rev. RNA
, vol.4
, pp. 35-48
-
-
Jackman, J.E.1
Alfonzo, J.D.2
-
32
-
-
47949107313
-
Human DNMT2 methylates tRNA(Asp) molecules using a DNA methyltransferase-like catalytic mechanism
-
Jurkowski, T.P., Meusburger, M., Phalke, S., Helm, M., Nellen, W., Reuter, G., and Jeltsch, A. (2008). Human DNMT2 methylates tRNA(Asp) molecules using a DNA methyltransferase-like catalytic mechanism. RNA 14: 1663–1670.
-
(2008)
RNA
, vol.14
, pp. 1663-1670
-
-
Jurkowski, T.P.1
Meusburger, M.2
Phalke, S.3
Helm, M.4
Nellen, W.5
Reuter, G.6
Jeltsch, A.7
-
33
-
-
84860760092
-
Mutation in NSUN2, which encodes an RNA methyltransferase, causes autosomal-recessive intellectual disability
-
Khan, M.A., et al. (2012). Mutation in NSUN2, which encodes an RNA methyltransferase, causes autosomal-recessive intellectual disability. Am. J. Hum. Genet. 90: 856–863.
-
(2012)
Am. J. Hum. Genet.
, vol.90
, pp. 856-863
-
-
Khan, M.A.1
-
34
-
-
84877350071
-
Identification of direct targets and modified bases of RNA cytosine methyltransferases
-
Khoddami, V., and Cairns, B.R. (2013). Identification of direct targets and modified bases of RNA cytosine methyltransferases. Nat. Biotechnol. 31: 458–464.
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 458-464
-
-
Khoddami, V.1
Cairns, B.R.2
-
35
-
-
84862590549
-
Going beyond five bases in DNA sequencing
-
Korlach, J., and Turner, S.W. (2012). Going beyond five bases in DNA sequencing. Curr. Opin. Struct. Biol. 22: 251–261.
-
(2012)
Curr. Opin. Struct. Biol.
, vol.22
, pp. 251-261
-
-
Korlach, J.1
Turner, S.W.2
-
36
-
-
84856576667
-
B-SOLANA: An approach for the analysis of two-base encoding bisulfite sequencing data
-
Kreck, B., Marnellos, G., Richter, J., Krueger, F., Siebert, R., and Franke, A. (2012). B-SOLANA: an approach for the analysis of two-base encoding bisulfite sequencing data. Bioinformatics 28: 428–429.
-
(2012)
Bioinformatics
, vol.28
, pp. 428-429
-
-
Kreck, B.1
Marnellos, G.2
Richter, J.3
Krueger, F.4
Siebert, R.5
Franke, A.6
-
37
-
-
84862234802
-
The Arabidopsis Information Resource (TAIR): Improved gene annotation and new tools
-
Lamesch, P., et al. (2012). The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools. Nucleic Acids Res. 40: D1202–D1210.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. D1202-D1210
-
-
Lamesch, P.1
-
38
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead, B., Trapnell, C., Pop, M., and Salzberg, S.L. (2009). Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10: R25.
-
(2009)
Genome Biol
, vol.10
, pp. R25
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
39
-
-
84896735766
-
Voom: Precision weights unlock linear model analysis tools for RNA-seq read counts
-
Law, C.W., Chen, Y., Shi, W., and Smyth, G.K. (2014). voom: Precision weights unlock linear model analysis tools for RNA-seq read counts. Genome Biol. 15: R29.
-
(2014)
Genome Biol
, vol.15
, pp. R29
-
-
Law, C.W.1
Chen, Y.2
Shi, W.3
Smyth, G.K.4
-
40
-
-
84875692043
-
MODOMICS: A database of RNA modification pathways–2013 update
-
Machnicka, M.A., et al. (2013). MODOMICS: a database of RNA modification pathways–2013 update. Nucleic Acids Res. 41: D262–D267.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D262-D267
-
-
Machnicka, M.A.1
-
41
-
-
84864110032
-
Whole exome sequencing identifies a splicing mutation in NSUN2 as a cause of a Dubowitz-like syndrome
-
Martinez, F.J., Lee, J.H., Lee, J.E., Blanco, S., Nickerson, E., Gabriel, S., Frye, M., Al-Gazali, L., and Gleeson, J.G. (2012). Whole exome sequencing identifies a splicing mutation in NSUN2 as a cause of a Dubowitz-like syndrome. J. Med. Genet. 49: 380–385.
-
(2012)
J. Med. Genet.
, vol.49
, pp. 380-385
-
-
Martinez, F.J.1
Lee, J.H.2
Lee, J.E.3
Blanco, S.4
Nickerson, E.5
Gabriel, S.6
Frye, M.7
Al-Gazali, L.8
Gleeson, J.G.9
-
42
-
-
0032821744
-
Multisite-specific tRNA:M5C-methyltransferase (Trm4) in yeast Saccharomyces cerevisiae: Identification of the gene and substrate specificity of the enzyme
-
Motorin, Y., and Grosjean, H. (1999). Multisite-specific tRNA:m5C-methyltransferase (Trm4) in yeast Saccharomyces cerevisiae: identification of the gene and substrate specificity of the enzyme. RNA 5: 1105–1118.
-
(1999)
RNA
, vol.5
, pp. 1105-1118
-
-
Motorin, Y.1
Grosjean, H.2
-
43
-
-
77953656943
-
TRNA stabilization by modified nucleotides
-
Motorin, Y., and Helm, M. (2010). tRNA stabilization by modified nucleotides. Biochemistry 49: 4934–4944.
-
(2010)
Biochemistry
, vol.49
, pp. 4934-4944
-
-
Motorin, Y.1
Helm, M.2
-
44
-
-
77950476036
-
5-methylcytosine in RNA: Detection, enzymatic formation and biological functions
-
Motorin, Y., Lyko, F., and Helm, M. (2010). 5-methylcytosine in RNA: detection, enzymatic formation and biological functions. Nucleic Acids Res. 38: 1415–1430.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 1415-1430
-
-
Motorin, Y.1
Lyko, F.2
Helm, M.3
-
45
-
-
61849109857
-
Phylogenetic analysis of the eukaryotic RNA (Cytosine-5)-methyltransferases
-
Pavlopoulou, A., and Kossida, S. (2009). Phylogenetic analysis of the eukaryotic RNA (cytosine-5)-methyltransferases. Genomics 93: 350–357.
-
(2009)
Genomics
, vol.93
, pp. 350-357
-
-
Pavlopoulou, A.1
Kossida, S.2
-
46
-
-
77953176036
-
A scaling normalization method for differential expression analysis of RNA-seq data
-
Robinson, M.D., and Oshlack, A. (2010). A scaling normalization method for differential expression analysis of RNA-seq data. Genome Biol. 11: R25.
-
(2010)
Genome Biol
, vol.11
, pp. R25
-
-
Robinson, M.D.1
Oshlack, A.2
-
47
-
-
33947101433
-
Aurora-B regulates RNA methyltransferase NSUN2
-
Sakita-Suto, S., Kanda, A., Suzuki, F., Sato, S., Takata, T., and Tatsuka, M. (2007). Aurora-B regulates RNA methyltransferase NSUN2. Mol. Biol. Cell 18: 1107–1117.
-
(2007)
Mol. Biol. Cell
, vol.18
, pp. 1107-1117
-
-
Sakita-Suto, S.1
Kanda, A.2
Suzuki, F.3
Sato, S.4
Takata, T.5
Tatsuka, M.6
-
48
-
-
59649120058
-
RNA cytosine methylation analysis by bisulfite sequencing
-
Schaefer, M., Pollex, T., Hanna, K., and Lyko, F. (2009). RNA cytosine methylation analysis by bisulfite sequencing. Nucleic Acids Res. 37: e12.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Schaefer, M.1
Pollex, T.2
Hanna, K.3
Lyko, F.4
-
49
-
-
77955884641
-
RNA methylation by Dnmt2 protects transfer RNAs against stress-induced cleavage
-
Schaefer, M., Pollex, T., Hanna, K., Tuorto, F., Meusburger, M., Helm, M., and Lyko, F. (2010). RNA methylation by Dnmt2 protects transfer RNAs against stress-induced cleavage. Genes Dev. 24: 1590–1595.
-
(2010)
Genes Dev
, vol.24
, pp. 1590-1595
-
-
Schaefer, M.1
Pollex, T.2
Hanna, K.3
Tuorto, F.4
Meusburger, M.5
Helm, M.6
Lyko, F.7
-
50
-
-
84938977749
-
Methylation of ribosomal RNA by NSUN5 is a conserved mechanism modulating organismal lifespan
-
Schosserer, M., et al. (2015). Methylation of ribosomal RNA by NSUN5 is a conserved mechanism modulating organismal lifespan. Nat. Commun. 6: 6158.
-
(2015)
Nat. Commun.
, vol.6
, pp. 6158
-
-
Schosserer, M.1
-
51
-
-
84903140945
-
The Dnmt2 RNA methyltransferase homolog of Geobacter sulfurreducens specifically methylates tRNA-Glu
-
Shanmugam, R., et al. (2014). The Dnmt2 RNA methyltransferase homolog of Geobacter sulfurreducens specifically methylates tRNA-Glu. Nucleic Acids Res. 42: 6487–6496.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. 6487-6496
-
-
Shanmugam, R.1
-
52
-
-
84885993080
-
Yeast Nop2 and Rcm1 methylate C2870 and C2278 of the 25S rRNA, respectively
-
Sharma, S., Yang, J., Watzinger, P., Kötter, P., and Entian, K.D. (2013). Yeast Nop2 and Rcm1 methylate C2870 and C2278 of the 25S rRNA, respectively. Nucleic Acids Res. 41: 9062–9076.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 9062-9076
-
-
Sharma, S.1
Yang, J.2
Watzinger, P.3
Kötter, P.4
Entian, K.D.5
-
53
-
-
33644872577
-
Limma: Linear models for microarray data
-
R. Gentleman, V. Carey, S. Dudoit, R. Irizarry, and W. Huber, eds (New York: Springer
-
Smyth, G.K. (2005). Limma: Linear models for microarray data. In Bioinformatics and Computational Biology Solutions Using R and Bioconductor, R. Gentleman, V. Carey, S. Dudoit, R. Irizarry, and W. Huber, eds (New York: Springer), pp. 397–420.
-
(2005)
Bioinformatics and Computational Biology Solutions Using R and Bioconductor
, pp. 397-420
-
-
Smyth, G.K.1
-
55
-
-
34248653184
-
Rapid, transient expression of fluorescent fusion proteins in tobacco plants and generation of stably transformed plants
-
Sparkes, I.A., Runions, J., Kearns, A., and Hawes, C. (2006). Rapid, transient expression of fluorescent fusion proteins in tobacco plants and generation of stably transformed plants. Nat. Protoc. 1: 2019–2025.
-
(2006)
Nat. Protoc.
, vol.1
, pp. 2019-2025
-
-
Sparkes, I.A.1
Runions, J.2
Kearns, A.3
Hawes, C.4
-
56
-
-
84860751168
-
Widespread occurrence of 5-methylcytosine in human coding and non-coding RNA
-
Squires, J.E., Patel, H.R., Nousch, M., Sibbritt, T., Humphreys, D.T., Parker, B.J., Suter, C.M., and Preiss, T. (2012). Widespread occurrence of 5-methylcytosine in human coding and non-coding RNA. Nucleic Acids Res. 40: 5023–5033.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 5023-5033
-
-
Squires, J.E.1
Patel, H.R.2
Nousch, M.3
Sibbritt, T.4
Humphreys, D.T.5
Parker, B.J.6
Suter, C.M.7
Preiss, T.8
-
57
-
-
74549213782
-
Plant primary meristems: Shared functions and regulatory mechanisms
-
Stahl, Y., and Simon, R. (2010). Plant primary meristems: shared functions and regulatory mechanisms. Curr. Opin. Plant Biol. 13: 53–58.
-
(2010)
Curr. Opin. Plant Biol.
, vol.13
, pp. 53-58
-
-
Stahl, Y.1
Simon, R.2
-
59
-
-
79960610118
-
REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms
-
Supek, F., Bošsnjak, M., Skunca,š N., and Smuc,š T. (2011). REVIGO summarizes and visualizes long lists of gene ontology terms. PLoS One 6: e21800.
-
(2011)
Plos One
, vol.6
-
-
Supek, F.1
Bošsnjak, M.2
Skunca, N.3
Smuc, T.4
-
60
-
-
43749098985
-
DNA methylation landscapes: Provocative insights from epigenomics
-
Suzuki, M.M., and Bird, A. (2008). DNA methylation landscapes: provocative insights from epigenomics. Nat. Rev. Genet. 9: 465–476.
-
(2008)
Nat. Rev. Genet.
, vol.9
, pp. 465-476
-
-
Suzuki, M.M.1
Bird, A.2
-
61
-
-
52949145277
-
TRNA cleavage is a conserved response to oxidative stress in eukaryotes
-
Thompson, D.M., Lu, C., Green, P.J., and Parker, R. (2008). tRNA cleavage is a conserved response to oxidative stress in eukaryotes. RNA 14: 2095–2103.
-
(2008)
RNA
, vol.14
, pp. 2095-2103
-
-
Thompson, D.M.1
Lu, C.2
Green, P.J.3
Parker, R.4
-
62
-
-
65449136284
-
TopHat: Discovering splice junctions with RNA-Seq
-
Trapnell, C., Pachter, L., and Salzberg, S.L. (2009). TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25: 1105–1111.
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
63
-
-
84941744498
-
The tRNA methyltransferase Dnmt2 is required for accurate polypeptide synthesis during haematopoiesis
-
Tuorto, F., et al. (2015). The tRNA methyltransferase Dnmt2 is required for accurate polypeptide synthesis during haematopoiesis. EMBO J. 34: 2350–2362.
-
(2015)
EMBO J
, vol.34
, pp. 2350-2362
-
-
Tuorto, F.1
-
64
-
-
84866074106
-
RNA cytosine methylation by Dnmt2 and NSun2 promotes tRNA stability and protein synthesis
-
Tuorto, F., Liebers, R., Musch, T., Schaefer, M., Hofmann, S., Kellner, S., Frye, M., Helm, M., Stoecklin, G., and Lyko, F. (2012). RNA cytosine methylation by Dnmt2 and NSun2 promotes tRNA stability and protein synthesis. Nat. Struct. Mol. Biol. 19: 900–905.
-
(2012)
Nat. Struct. Mol. Biol.
, vol.19
, pp. 900-905
-
-
Tuorto, F.1
Liebers, R.2
Musch, T.3
Schaefer, M.4
Hofmann, S.5
Kellner, S.6
Frye, M.7
Helm, M.8
Stoecklin, G.9
Lyko, F.10
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