-
1
-
-
0034296394
-
The ubiquitin system
-
Hershko, A., Ciechanover, A., and Varshavsky, A. (2000) The ubiquitin system. Nat. Med. 6, 1073-1081
-
(2000)
Nat. Med.
, vol.6
, pp. 1073-1081
-
-
Hershko, A.1
Ciechanover, A.2
Varshavsky, A.3
-
2
-
-
0028898424
-
Protein ubiquitination involving an E1-E2-E3 enzyme ubiquitin thioester cascade
-
Scheffner, M., Nuber, U., and Huibregtse, J. M. (1995) Protein ubiquitination involving an E1-E2-E3 enzyme ubiquitin thioester cascade. Nature 373, 81-83
-
(1995)
Nature
, vol.373
, pp. 81-83
-
-
Scheffner, M.1
Nuber, U.2
Huibregtse, J.M.3
-
3
-
-
68049084674
-
Breaking the chains: Structure and function of the deubiquitinases
-
Komander, D., Clague, M. J., and Urbé, S. (2009) Breaking the chains: structure and function of the deubiquitinases. Nat. Rev. Mol. Cell Biol. 10, 550-563
-
(2009)
Nat. Rev. Mol. Cell Biol.
, vol.10
, pp. 550-563
-
-
Komander, D.1
Clague, M.J.2
Urbé, S.3
-
4
-
-
65249186662
-
Polyubiquitin binding and disassembly by deubiquitinating enzymes
-
Reyes-Turcu, F. E., and Wilkinson, K. D. (2009) Polyubiquitin binding and disassembly by deubiquitinating enzymes. Chem. Rev. 109, 1495-1508
-
(2009)
Chem. Rev.
, vol.109
, pp. 1495-1508
-
-
Reyes-Turcu, F.E.1
Wilkinson, K.D.2
-
5
-
-
70349441058
-
Ubiquitin-binding domains-from structures to functions
-
Dikic, I., Wakatsuki, S., and Walters, K. J. (2009) Ubiquitin-binding domains-from structures to functions. Nat. Rev. Mol. Cell Biol. 10, 659-671
-
(2009)
Nat. Rev. Mol. Cell Biol.
, vol.10
, pp. 659-671
-
-
Dikic, I.1
Wakatsuki, S.2
Walters, K.J.3
-
6
-
-
23144452091
-
Ubiquitin-binding domains
-
Hicke, L., Schubert, H. L., and Hill, C. P. (2005) Ubiquitin-binding domains. Nat. Rev. Mol. Cell Biol. 6, 610-621
-
(2005)
Nat. Rev. Mol. Cell Biol.
, vol.6
, pp. 610-621
-
-
Hicke, L.1
Schubert, H.L.2
Hill, C.P.3
-
7
-
-
33749346301
-
Modification of proteins by ubiquitin and ubiquitin-like proteins
-
Kerscher, O., Felberbaum, R., and Hochstrasser, M. (2006) Modification of proteins by ubiquitin and ubiquitin-like proteins. Annu. Rev. Cell Dev. Biol. 22, 159-180
-
(2006)
Annu. Rev. Cell Dev. Biol.
, vol.22
, pp. 159-180
-
-
Kerscher, O.1
Felberbaum, R.2
Hochstrasser, M.3
-
8
-
-
0033016291
-
The ubiquitin-proteasome pathway and pathogenesis of human diseases
-
Schwartz, A. L, and Ciechanover, A. (1999) The ubiquitin-proteasome pathway and pathogenesis of human diseases. Annu. Rev. Med. 50, 57-74
-
(1999)
Annu. Rev. Med.
, vol.50
, pp. 57-74
-
-
Schwartz, A.L.1
Ciechanover, A.2
-
9
-
-
33846471122
-
Proteasome-independent functions of ubiquitin in endocytosis and signaling
-
Mukhopadhyay, D., and Riezman, H. (2007) Proteasome-independent functions of ubiquitin in endocytosis and signaling. Science 315, 201-205
-
(2007)
Science
, vol.315
, pp. 201-205
-
-
Mukhopadhyay, D.1
Riezman, H.2
-
10
-
-
27144529182
-
Ubiquitylation and cell signaling
-
Haglund, K., and Dikic, I. (2005) Ubiquitylation and cell signaling. EMBO J. 24, 3353-3359
-
(2005)
EMBO J
, vol.24
, pp. 3353-3359
-
-
Haglund, K.1
Dikic, I.2
-
11
-
-
23144449208
-
Ubiquitin and ubiquitin-like proteins as multifunctional signals
-
Welchman, R. L., Gordon, C., and Mayer, R. J. (2005) Ubiquitin and ubiquitin-like proteins as multifunctional signals. Nat. Rev. Mol. Cell Biol. 6, 599-609
-
(2005)
Nat. Rev. Mol. Cell Biol.
, vol.6
, pp. 599-609
-
-
Welchman, R.L.1
Gordon, C.2
Mayer, R.J.3
-
12
-
-
0038362292
-
When ubiquitin meets ubiquitin receptors: A signalling connection
-
Di Fiore, P. P., Polo, S., and Hofmann, K. (2003) When ubiquitin meets ubiquitin receptors: a signalling connection. Nat. Rev. Mol. Cell Biol. 4, 491-497
-
(2003)
Nat. Rev. Mol. Cell Biol.
, vol.4
, pp. 491-497
-
-
Di Fiore, P.P.1
Polo, S.2
Hofmann, K.3
-
13
-
-
0035293622
-
Protein regulation by monoubiquitin
-
Hicke, L. (2001) Protein regulation by monoubiquitin. Nat. Rev. Mol. Cell Biol. 2, 195-201
-
(2001)
Nat. Rev. Mol. Cell Biol.
, vol.2
, pp. 195-201
-
-
Hicke, L.1
-
14
-
-
0038394715
-
Multiple monoubiquitination of RTKs is sufficient for their endocytosis and degradation
-
Haglund, K., Sigismund, S., Polo, S., Szymkiewicz, I., Di Fiore, P. P., and Dikic, I. (2003) Multiple monoubiquitination of RTKs is sufficient for their endocytosis and degradation. Nat. Cell Biol. 5, 461-466
-
(2003)
Nat. Cell Biol.
, vol.5
, pp. 461-466
-
-
Haglund, K.1
Sigismund, S.2
Polo, S.3
Szymkiewicz, I.4
Di Fiore, P.P.5
Dikic, I.6
-
15
-
-
0034602845
-
Recognition of the polyubiquitin proteolytic signal
-
Thrower, J. S., Hoffman, L., Rechsteiner, M., and Pickart, C. M. (2000)Recognition of the polyubiquitin proteolytic signal. EMBO J. 19, 94-102
-
(2000)
EMBO J.
, vol.19
, pp. 94-102
-
-
Thrower, J.S.1
Hoffman, L.2
Rechsteiner, M.3
Pickart, C.M.4
-
16
-
-
44649101850
-
Atypical ubiquitin chains: New molecular signals
-
Ikeda, F., and Dikic, I. (2008) Atypical ubiquitin chains: new molecular signals. EMBO Rep. 9, 536-542
-
(2008)
EMBO Rep.
, vol.9
, pp. 536-542
-
-
Ikeda, F.1
Dikic, I.2
-
17
-
-
59649103156
-
Involvement of linear polyubiquitylation of NEMO in NF-κB activation
-
Tokunaga, F., Sakata, S., Saeki, Y., Satomi, Y., Kirisako, T., Kamei, K., Nakagawa, T., Kato, M., Murata, S., Yamaoka, S., Yamamoto, M., Akira, S., Takao, T., Tanaka, K., and Iwai, K. (2009) Involvement of linear polyubiquitylation of NEMO in NF-κB activation. Nat. Cell Biol. 11, 123-132
-
(2009)
Nat. Cell Biol.
, vol.11
, pp. 123-132
-
-
Tokunaga, F.1
Sakata, S.2
Saeki, Y.3
Satomi, Y.4
Kirisako, T.5
Kamei, K.6
Nakagawa, T.7
Kato, M.8
Murata, S.9
Yamaoka, S.10
Yamamoto, M.11
Akira, S.12
Takao, T.13
Tanaka, K.14
Iwai, K.15
-
18
-
-
63049125531
-
Quantitative proteomics reveals the function of unconventional ubiquitin chains in proteasomal degradation
-
Xu, P., Duong, D. M., Seyfried, N. T., Cheng, D., Xie, Y., Robert, J., Rush, J., Hochstrasser, M., Finley, D., and Peng, J. (2009) Quantitative proteomics reveals the function of unconventional ubiquitin chains in proteasomal degradation. Cell 137, 133-145
-
(2009)
Cell
, vol.137
, pp. 133-145
-
-
Xu, P.1
Duong, D.M.2
Seyfried, N.T.3
Cheng, D.4
Xie, Y.5
Robert, J.6
Rush, J.7
Hochstrasser, M.8
Finley, D.9
Peng, J.10
-
19
-
-
77955516435
-
K11-linked polyubiquitination in cell cycle control revealed by a K11 linkage-specific antibody
-
Matsumoto, M. L., Wickliffe, K. E., Dong, K. C., Yu, C., Bosanac, I., Bustos, D., Phu, L., Kirkpatrick, D. S., Hymowitz, S. G., Rape, M., Kelley, R. F., and Dixit, V. M. (2010) K11-linked polyubiquitination in cell cycle control revealed by a K11 linkage-specific antibody. Mol. Cell 39, 477- 484
-
(2010)
Mol. Cell
, vol.39
, pp. 477-484
-
-
Matsumoto, M.L.1
Wickliffe, K.E.2
Dong, K.C.3
Yu, C.4
Bosanac, I.5
Bustos, D.6
Phu, L.7
Kirkpatrick, D.S.8
Hymowitz, S.G.9
Rape, M.10
Kelley, R.F.11
Dixit, M.12
-
20
-
-
78649372085
-
K33-linked polyubiquitination of T cell receptor-ζ regulates proteolysis-independent T cell signaling
-
Huang, H., Jeon, M.-S., Liao, L., Yang, C., Elly, C., Yates, J. R., 3rd, and Liu, Y.-C. (2010) K33-linked polyubiquitination of T cell receptor-ζ regulates proteolysis-independent T cell signaling. Immunity 33, 60-70
-
(2010)
Immunity
, vol.33
, pp. 60-70
-
-
Huang, H.1
Jeon, M.-S.2
Liao, L.3
Yang, C.4
Elly, C.5
Yates, J.R.6
Liu, Y.-C.7
-
21
-
-
84901004245
-
K33-linked polyubiquitination of coronin 7 by Cul3-KLHL20 ubiquitin E3 ligase regulates protein trafficking
-
Yuan, W.-C., Lee, Y.-R., Lin, S.-Y., Chang, L.-Y., Tan, Y. P., Hung, C.-C., Kuo, J.-C., Liu, C.-H., Lin, M.-Y., Xu, M., Chen, Z. J., and Chen, R. H. (2014) K33-linked polyubiquitination of coronin 7 by Cul3-KLHL20 ubiquitin E3 ligase regulates protein trafficking. Mol. Cell 54, 586-600
-
(2014)
Mol. Cell
, vol.54
, pp. 586-600
-
-
Yuan, W.-C.1
Lee, Y.-R.2
Lin, S.-Y.3
Chang, L.-Y.4
Tan, Y.P.5
Hung, C.-C.6
Kuo, J.-C.7
Liu, C.-H.8
Lin, M.-Y.9
Xu, M.10
Chen, Z.J.11
Chen, R.H.12
-
22
-
-
84864222562
-
Atypical ubiquitylation-the unexplored world of polyubiquitin beyond Lys-48 and Lys-63 linkages
-
Kulathu, Y., and Komander, D. (2012) Atypical ubiquitylation-the unexplored world of polyubiquitin beyond Lys-48 and Lys-63 linkages. Nat. Rev. Mol. Cell Biol. 13, 508-523
-
(2012)
Nat. Rev. Mol. Cell Biol.
, vol.13
, pp. 508-523
-
-
Kulathu, Y.1
Komander, D.2
-
23
-
-
79955776357
-
Ubiquitinated proteome: Ready for global?
-
R110.006882
-
Shi, Y., Xu, P., and Qin, J. (2011) Ubiquitinated proteome: ready for global? Mol. Cell. Proteomics 10, R110.006882
-
(2011)
Mol. Cell. Proteomics
, vol.10
-
-
Shi, Y.1
Xu, P.2
Qin, J.3
-
24
-
-
0041706156
-
A proteomics approach to understanding protein ubiquitination
-
Peng, J., Schwartz, D., Elias, J. E., Thoreen, C. C., Cheng, D., Marsischky, G., Roelofs, J., Finley, D., and Gygi, S. P. (2003) A proteomics approach to understanding protein ubiquitination. Nat. Biotechnol. 21, 921-926
-
(2003)
Nat. Biotechnol
, vol.21
, pp. 921-926
-
-
Peng, J.1
Schwartz, D.2
Elias, J.E.3
Thoreen, C.C.4
Cheng, D.5
Marsischky, G.6
Roelofs, J.7
Finley, D.8
Gygi, S.P.9
-
25
-
-
55949136614
-
Quantitative analysis of global ubiquitination in HeLa cells by mass spectrometry
-
Meierhofer, D., Wang, X., Huang, L., and Kaiser, P. (2008) Quantitative analysis of global ubiquitination in HeLa cells by mass spectrometry. J.Proteome Res. 7, 4566-4576
-
(2008)
J. Proteome Res.
, vol.7
, pp. 4566-4576
-
-
Meierhofer, D.1
Wang, X.2
Huang, L.3
Kaiser, P.4
-
26
-
-
79955780605
-
A novel strategy to isolate ubiquitin conjugates reveals wide role for ubiquitination during neural development
-
M110.002188
-
Franco, M., Seyfried, N. T., Brand, A. H., Peng, J., and Mayor, U. (2011) A novel strategy to isolate ubiquitin conjugates reveals wide role for ubiquitination during neural development. Mol. Cell. Proteomics 10, M110.002188
-
(2011)
Mol. Cell. Proteomics
, vol.10
-
-
Franco, M.1
Seyfried, N.T.2
Brand, A.H.3
Peng, J.4
Mayor, U.5
-
27
-
-
33645703441
-
A tandem affinity tag for two-step purification under fully denaturing conditions application in ubiquitin profiling and protein complex identification combined with in vivo crosslinking
-
Tagwerker, C., Flick, K., Cui, M., Guerrero, C., Dou, Y., Auer, B., Baldi, P., Huang, L., and Kaiser, P. (2006) A tandem affinity tag for two-step purification under fully denaturing conditions application in ubiquitin profiling and protein complex identification combined with in vivo crosslinking. Mol. Cell. Proteomics 5, 737-748
-
(2006)
Mol. Cell. Proteomics
, vol.5
, pp. 737-748
-
-
Tagwerker, C.1
Flick, K.2
Cui, M.3
Guerrero, C.4
Dou, Y.5
Auer, B.6
Baldi, P.7
Huang, L.8
Kaiser, P.9
-
28
-
-
49549117842
-
Ubiquitin chain editing revealed by polyubiquitin linkage-specific antibodies
-
Newton, K., Matsumoto, M. L., Wertz, I. E., Kirkpatrick, D. S., Lill, J. R., Tan, J., Dugger, D., Gordon, N., Sidhu, S. S., Fellouse, F. A., Komuves, L., French, D. M., Ferrando, R. E., Lam, C., Compaan, D., et al. (2008)Ubiquitin chain editing revealed by polyubiquitin linkage-specific antibodies. Cell 134, 668-678
-
(2008)
Cell
, vol.134
, pp. 668-678
-
-
Newton, K.1
Matsumoto, M.L.2
Wertz, I.E.3
Kirkpatrick, D.S.4
Lill, J.R.5
Tan, J.6
Dugger, D.7
Gordon, N.8
Sidhu, S.S.9
Fellouse, F.A.10
Komuves, L.11
French, D.M.12
Ferrando, R.E.13
Lam, C.14
Compaan, D.15
-
29
-
-
27744500428
-
Large-scale analysis of the human ubiquitinrelated proteome
-
Matsumoto, M., Hatakeyama, S., Oyamada, K., Oda, Y., Nishimura, T., and Nakayama, K. I. (2005) Large-scale analysis of the human ubiquitinrelated proteome. Proteomics 5, 4145-4151
-
(2005)
Proteomics
, vol.5
, pp. 4145-4151
-
-
Matsumoto, M.1
Hatakeyama, S.2
Oyamada, K.3
Oda, Y.4
Nishimura, T.5
Nakayama, K.I.6
-
30
-
-
29144505073
-
Proteomic analysis of ubiquitinated proteins from human MCF-7 breast cancer cells by immunoaffinity purification and mass spectrometry
-
Vasilescu, J., Smith, J. C., Ethier, M., and Figeys, D. (2005) Proteomic analysis of ubiquitinated proteins from human MCF-7 breast cancer cells by immunoaffinity purification and mass spectrometry. J. Proteome Res. 4, 2192-2200
-
(2005)
J. Proteome Res.
, vol.4
, pp. 2192-2200
-
-
Vasilescu, J.1
Smith, J.C.2
Ethier, M.3
Figeys, D.4
-
31
-
-
78651225388
-
Global analysis of lysine ubiquitination by ubiquitin remnant immunoaffinity profiling
-
Xu, G., Paige, J. S., and Jaffrey, S. R. (2010) Global analysis of lysine ubiquitination by ubiquitin remnant immunoaffinity profiling. Nat. Biotechnol. 28, 868-873
-
(2010)
Nat. Biotechnol
, vol.28
, pp. 868-873
-
-
Xu, G.1
Paige, J.S.2
Jaffrey, S.R.3
-
32
-
-
82455179484
-
Systematic and quantitative assessment of the ubiquitin-modified proteome
-
Kim, W., Bennett, E. J., Huttlin, E. L., Guo, A., Li, J., Possemato, A., Sowa, M. E., Rad, R., Rush, J., Comb, M. J., Harper, J. W., and Gygi, S. P. (2011) Systematic and quantitative assessment of the ubiquitin-modified proteome. Mol. Cell 44, 325-340
-
(2011)
Mol. Cell
, vol.44
, pp. 325-340
-
-
Kim, W.1
Bennett, E.J.2
Huttlin, E.L.3
Guo, A.4
Li, J.5
Possemato, A.6
Sowa, M.E.7
Rad, R.8
Rush, J.9
Comb, M.J.10
Harper, J.W.11
Gygi, S.P.12
-
33
-
-
80054033461
-
A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles
-
M111.013284
-
Wagner, S. A., Beli, P., Weinert, B. T., Nielsen, M. L., Cox, J., Mann, M., and Choudhary, C. (2011) A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles. Mol. Cell. Proteomics 10, M111.013284
-
(2011)
Mol. Cell. Proteomics
, vol.10
-
-
Wagner, S.A.1
Beli, P.2
Weinert, B.T.3
Nielsen, M.L.4
Cox, J.5
Mann, M.6
Choudhary, C.7
-
34
-
-
84874619400
-
Refined preparation and use of anti-diglycine remnant (K-ϵ-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments
-
Udeshi, N. D., Svinkina, T., Mertins, P., Kuhn, E., Mani, D. R., Qiao, J. W., and Carr, S. A. (2013) Refined preparation and use of anti-diglycine remnant (K-ϵ-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments. Mol. Cell. Proteomics 12, 825- 831
-
(2013)
Mol. Cell. Proteomics
, vol.12
, pp. 825-831
-
-
Udeshi, N.D.1
Svinkina, T.2
Mertins, P.3
Kuhn, E.4
Mani, D.R.5
Qiao, J.W.6
Carr, S.A.7
-
35
-
-
84875252687
-
Advances in characterizing ubiquitylation sites by mass spectrometry
-
Sylvestersen, K. B., Young, C., and Nielsen, M. L. (2013) Advances in characterizing ubiquitylation sites by mass spectrometry. Curr. Opin. Chem. Biol. 17, 49-58
-
(2013)
Curr. Opin. Chem. Biol.
, vol.17
, pp. 49-58
-
-
Sylvestersen, K.B.1
Young, C.2
Nielsen, M.L.3
-
36
-
-
84867103151
-
Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues
-
Wagner, S. A., Beli, P., Weinert, B. T., Schölz, C., Kelstrup, C. D., Young, C., Nielsen, M. L., Olsen, J. V., Brakebusch, C., and Choudhary, C. (2012)Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues. Mol. Cell. Proteomics 11, 1578-1585
-
(2012)
Mol. Cell. Proteomics
, vol.11
, pp. 1578-1585
-
-
Wagner, S.A.1
Beli, P.2
Weinert, B.T.3
Schölz, C.4
Kelstrup, C.D.5
Young, C.6
Nielsen, M.L.7
Olsen, J.V.8
Brakebusch, C.9
Choudhary, C.10
-
37
-
-
33646064427
-
Structural complexity in ubiquitin recognition
-
Harper, J. W., and Schulman, B. A. (2006) Structural complexity in ubiquitin recognition. Cell 124, 1133-1136
-
(2006)
Cell
, vol.124
, pp. 1133-1136
-
-
Harper, J.W.1
Schulman, B.A.2
-
38
-
-
84860427832
-
Ubiquitin and its binding domains
-
Randles, L., and Walters, K. J. (2011) Ubiquitin and its binding domains. Front. Biosci. 17, 2140-2157
-
(2011)
Front. Biosci.
, vol.17
, pp. 2140-2157
-
-
Randles, L.1
Walters, K.J.2
-
39
-
-
26944465404
-
Diverse polyubiquitin interaction properties of ubiquitin-associated domains
-
Raasi, S., Varadan, R., Fushman, D., and Pickart, C. M. (2005) Diverse polyubiquitin interaction properties of ubiquitin-associated domains. Nat. Struct. Mol. Biol. 12, 708-714
-
(2005)
Nat. Struct. Mol. Biol.
, vol.12
, pp. 708-714
-
-
Raasi, S.1
Varadan, R.2
Fushman, D.3
Pickart, C.M.4
-
40
-
-
25144507198
-
Mechanism of Lys-48-linked polyubiquitin chain recognition by the Mud1 UBA domain
-
Trempe, J. F., Brown, N. R., Lowe, E. D., Gordon, C., Campbell, I. D., Noble, M. E., and Endicott, J. A. (2005) Mechanism of Lys-48-linked polyubiquitin chain recognition by the Mud1 UBA domain. EMBO J. 24, 3178-3189
-
(2005)
EMBO J.
, vol.24
, pp. 3178-3189
-
-
Trempe, J.F.1
Brown, N.R.2
Lowe, E.D.3
Gordon, C.4
Campbell, I.D.5
Noble, M.E.6
Endicott, J.A.7
-
41
-
-
67349231313
-
Molecular discrimination of structurally equivalent Lys 63-linked and linear polyubiquitin chains
-
Komander, D., Reyes-Turcu, F., Licchesi, J. D., Odenwaelder, P., Wilkinson, K. D., and Barford, D. (2009) Molecular discrimination of structurally equivalent Lys 63-linked and linear polyubiquitin chains. EMBO Rep. 10, 466-473
-
(2009)
EMBO Rep.
, vol.10
, pp. 466-473
-
-
Komander, D.1
Reyes-Turcu, F.2
Licchesi, J.D.3
Odenwaelder, P.4
Wilkinson, K.D.5
Barford, D.6
-
42
-
-
62549155321
-
Specific recognition of linear ubiquitin chains by NEMO is important for NF-κB activation
-
Rahighi, S., Ikeda, F., Kawasaki, M., Akutsu, M., Suzuki, N., Kato, R., Kensche, T., Uejima, T., Bloor, S., Komander, D., Randow, F., Wakatsuki, S., and Dikic, I. (2009) Specific recognition of linear ubiquitin chains by NEMO is important for NF-κB activation. Cell 136, 1098-1109
-
(2009)
Cell
, vol.136
, pp. 1098-1109
-
-
Rahighi, S.1
Ikeda, F.2
Kawasaki, M.3
Akutsu, M.4
Suzuki, N.5
Kato, R.6
Kensche, T.7
Uejima, T.8
Bloor, S.9
Komander, D.10
Randow, F.11
Wakatsuki, S.12
Dikic, I.13
-
43
-
-
61649103747
-
Structural basis for recognition of diubiquitins by NEMO
-
Lo, Y.-C., Lin, S.-C., Rospigliosi, C. C., Conze, D. B., Wu, C.-J., Ashwell, J. D., Eliezer, D., and Wu, H. (2009) Structural basis for recognition of diubiquitins by NEMO. Mol. Cell 33, 602-615
-
(2009)
Mol. Cell
, vol.33
, pp. 602-615
-
-
Lo, Y.-C.1
Lin, S.-C.2
Rospigliosi, C.C.3
Conze, D.B.4
Wu, C.-J.5
Ashwell, J.D.6
Eliezer, D.7
Wu, H.8
-
44
-
-
0035380584
-
Purification of poly-ubiquitinated proteins by S5a-affinity chromatography
-
Layfield, R., Tooth, D., Landon, M., Dawson, S., Mayer, J., and Alban, A. (2001) Purification of poly-ubiquitinated proteins by S5a-affinity chromatography. Proteomics 1, 773-777
-
(2001)
Proteomics
, vol.1
, pp. 773-777
-
-
Layfield, R.1
Tooth, D.2
Landon, M.3
Dawson, S.4
Mayer, J.5
Alban, A.6
-
45
-
-
79955754344
-
A data set of human endogenous protein ubiquitination sites
-
002089
-
Shi, Y., Chan, D. W., Jung, S. Y., Malovannaya, A., Wang, Y., and Qin, J.(2011) A data set of human endogenous protein ubiquitination sites. Mol. Cell. Proteomics 10, M110.002089
-
(2011)
Mol. Cell. Proteomics
, vol.10
, pp. M110
-
-
Shi, Y.1
Chan, D.W.2
Jung, S.Y.3
Malovannaya, A.4
Wang, Y.5
Qin, J.6
-
46
-
-
84861344026
-
Integrative analysis of the ubiquitin proteome isolated using tandem ubiquitin binding entities (TUBEs)
-
Lopitz-Otsoa, F., Rodriguez-Suarez, E., Aillet, F., Casado-Vela, J., Lang, V., Matthiesen, R., Elortza, F., and Rodriguez, M. S. (2012) Integrative analysis of the ubiquitin proteome isolated using tandem ubiquitin binding entities (TUBEs). J. Proteomics 75, 2998-3014
-
(2012)
J. Proteomics
, vol.75
, pp. 2998-3014
-
-
Lopitz-Otsoa, F.1
Rodriguez-Suarez, E.2
Aillet, F.3
Casado-Vela, J.4
Lang, V.5
Matthiesen, R.6
Elortza, F.7
Rodriguez, M.S.8
-
47
-
-
70449084692
-
Efficient protection and isolation of ubiquitylated proteins using tandem ubiquitin-binding entities
-
Hjerpe, R., Aillet, F., Lopitz-Otsoa, F., Lang, V., England, P., and Rodriguez, M. S. (2009) Efficient protection and isolation of ubiquitylated proteins using tandem ubiquitin-binding entities. EMBO Rep. 10, 1250-1258
-
(2009)
EMBO Rep.
, vol.10
, pp. 1250-1258
-
-
Hjerpe, R.1
Aillet, F.2
Lopitz-Otsoa, F.3
Lang, V.4
England, P.5
Rodriguez, M.S.6
-
48
-
-
0034616943
-
Cell cycle-regulated modification of the ribosome by a variant multiubiquitin chain
-
Spence, J., Gali, R. R., Dittmar, G., Sherman, F., Karin, M., and Finley, D. (2000) Cell cycle-regulated modification of the ribosome by a variant multiubiquitin chain. Cell 102, 67-76
-
(2000)
Cell
, vol.102
, pp. 67-76
-
-
Spence, J.1
Gali, R.R.2
Dittmar, G.3
Sherman, F.4
Karin, M.5
Finley, D.6
-
49
-
-
0034782172
-
Establishment of cell clones with different metastatic potential from the metastatic hepatocellular carcinoma cell line MHCC97. World
-
Li, Y., Tang, Z.-Y., Ye, S.-L., Liu, Y.-K., Chen, J., Xue, Q., Chen, J., Gao, D.-M., and Bao, W.-H. (2001) Establishment of cell clones with different metastatic potential from the metastatic hepatocellular carcinoma cell line MHCC97. World J. Gastroenterol. 7, 630-636
-
(2001)
J. Gastroenterol.
, vol.7
, pp. 630-636
-
-
Li, Y.1
Tang, Z.-Y.2
Ye, S.-L.3
Liu, Y.-K.4
Chen, J.5
Xue, Q.6
Chen, J.7
Gao, D.-M.8
Bao, W.-H.9
-
50
-
-
84881093655
-
A fast workflow for identification and quantification of proteomes
-
Ding, C., Jiang, J., Wei, J., Liu, W., Zhang, W., Liu, M., Fu, T., Lu, T., Song, L., Ying, W., Chang, C., Zhang, Y., Ma, J., Wei, L., Malovannaya, A., et al. (2013) A fast workflow for identification and quantification of proteomes. Mol. Cell. Proteomics 12, 2370-2380
-
(2013)
Mol. Cell. Proteomics
, vol.12
, pp. 2370-2380
-
-
Ding, C.1
Jiang, J.2
Wei, J.3
Liu, W.4
Zhang, W.5
Liu, M.6
Fu, T.7
Lu, T.8
Song, L.9
Ying, W.10
Chang, C.11
Zhang, Y.12
Ma, J.13
Wei, L.14
Malovannaya, A.15
-
51
-
-
68549127159
-
Systematical optimization of reverse-phase chromatography for shotgun proteomics
-
Xu, P., Duong, D. M., and Peng, J. (2009) Systematical optimization of reverse-phase chromatography for shotgun proteomics. J. Proteome Res. 8, 3944-3950
-
(2009)
J. Proteome Res.
, vol.8
, pp. 3944-3950
-
-
Xu, P.1
Duong, D.M.2
Peng, J.3
-
52
-
-
84881252990
-
Systematic research on the pretreatment of peptides for quantitative proteomics using a C18 microcolumn
-
Zhai, L., Chang, C., Li, N., Duong, D. M., Chen, H., Deng, Z., Yang, J., Hong, X., Zhu, Y., and Xu, P. (2013) Systematic research on the pretreatment of peptides for quantitative proteomics using a C18 microcolumn. Proteomics 13, 2229-2237
-
(2013)
Proteomics
, vol.13
, pp. 2229-2237
-
-
Zhai, L.1
Chang, C.2
Li, N.3
Duong, D.M.4
Chen, H.5
Deng, Z.6
Yang, J.7
Hong, X.8
Zhu, Y.9
Xu, P.10
-
53
-
-
84890069161
-
Quantitative proteomics reveals significant changes in cell shape and an energy shift after IPTG induction via an optimized SILAC approach for Escherichia coli
-
Ping, L., Zhang, H., Zhai, L., Dammer, E. B., Duong, D. M., Li, N., Yan, Z., Wu, J., and Xu, P. (2013) Quantitative proteomics reveals significant changes in cell shape and an energy shift after IPTG induction via an optimized SILAC approach for Escherichia coli. J. Proteome Res. 12, 5978-5988
-
(2013)
J. Proteome Res.
, vol.12
, pp. 5978-5988
-
-
Ping, L.1
Zhang, H.2
Zhai, L.3
Dammer, E.B.4
Duong, D.M.5
Li, N.6
Yan, Z.7
Wu, J.8
Xu, P.9
-
54
-
-
58149295602
-
Quantitative serum proteomics from surface plasmon resonance imaging
-
Lausted, C., Hu, Z., and Hood, L. (2008) Quantitative serum proteomics from surface plasmon resonance imaging. Mol. Cell. Proteomics 7, 2464-2474
-
(2008)
Mol. Cell. Proteomics
, vol.7
, pp. 2464-2474
-
-
Lausted, C.1
Hu, Z.2
Hood, L.3
-
55
-
-
44949142293
-
Systematic approach for validating the ubiquitinated proteome
-
Seyfried, N. T., Xu, P., Duong, D. M., Cheng, D., Hanfelt, J., and Peng, J.(2008) Systematic approach for validating the ubiquitinated proteome. Anal. Chem. 80, 4161-4169
-
(2008)
Anal. Chem.
, vol.80
, pp. 4161-4169
-
-
Seyfried, N.T.1
Xu, P.2
Duong, D.M.3
Cheng, D.4
Hanfelt, J.5
Peng, J.6
-
56
-
-
34249989118
-
Roles of RabGEF1/Rabex-5 domains in regulating FcϵRI surface expression and FcϵRI-dependent responses in mast cells
-
Kalesnikoff, J., Rios, E. J., Chen, C.-C., Alejandro Barbieri, M. A., Tsai, M., Tam, S.-Y., and Galli, S. J. (2007) Roles of RabGEF1/Rabex-5 domains in regulating FcϵRI surface expression and FcϵRI-dependent responses in mast cells. Blood 109, 5308-5317
-
(2007)
Blood
, vol.109
, pp. 5308-5317
-
-
Kalesnikoff, J.1
Rios, E.J.2
Chen, C.-C.3
Alejandro Barbieri, M.A.4
Tsai, M.5
Tam, S.-Y.6
Galli, S.J.7
-
57
-
-
84910673082
-
Identification of candidate substrates for the Golgi Tul1 E3 ligase using quantitative DiGly proteomics in yeast
-
Tong, Z., Kim, M.-S., Pandey, A., and Espenshade, P. J. (2014) Identification of candidate substrates for the Golgi Tul1 E3 ligase using quantitative DiGly proteomics in yeast. Mol. Cell. Proteomics 13, 2871-2882
-
(2014)
Mol. Cell. Proteomics
, vol.13
, pp. 2871-2882
-
-
Tong, Z.1
Kim, M.-S.2
Pandey, A.3
Espenshade, P.J.4
-
58
-
-
0344758986
-
Regulation of cell polarity and protrusion formation by targeting RhoA for degradation
-
Wang, H.-R., Zhang, Y., Ozdamar, B., Ogunjimi, A. A., Alexandrova, E., Thomsen, G. H., and Wrana, J. L. (2003) Regulation of cell polarity and protrusion formation by targeting RhoA for degradation. Science 302, 1775-1779
-
(2003)
Science
, vol.302
, pp. 1775-1779
-
-
Wang, H.-R.1
Zhang, Y.2
Ozdamar, B.3
Ogunjimi, A.A.4
Alexandrova, E.5
Thomsen, G.H.6
Wrana, J.L.7
-
59
-
-
0344304420
-
2+ -dependent decrease of protein ubiquitination at synapses
-
Chen, H., Polo, S., Di Fiore, P. P., and De Camilli, P. V. (2003) Rapid Ca 2+ -dependent decrease of protein ubiquitination at synapses. Proc. Natl. Acad. Sci. U.S.A. 100, 14908-14913
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 14908-14913
-
-
Chen, H.1
Polo, S.2
Di Fiore, P.P.3
De Camilli, P.V.4
-
60
-
-
33644792262
-
Structural basis for ubiquitin recognition and autoubiquitination by Rabex-5
-
Lee, S., Tsai, Y. C., Mattera, R., Smith, W. J., Kostelansky, M. S., Weissman, A. M., Bonifacino, J. S., and Hurley, J. H. (2006) Structural basis for ubiquitin recognition and autoubiquitination by Rabex-5. Nat. Struct. Mol. Biol. 13, 264-271
-
(2006)
Nat. Struct. Mol. Biol.
, vol.13
, pp. 264-271
-
-
Lee, S.1
Tsai, Y.C.2
Mattera, R.3
Smith, W.J.4
Kostelansky, M.S.5
Weissman, A.M.6
Bonifacino, J.S.7
Hurley, J.H.8
-
61
-
-
17044420416
-
Structure of the UBA domain of Dsk2p in complex with ubiquitin: Molecular determinants for ubiquitin recognition
-
Ohno, A., Jee, J. G., Fujiwara, K., Tenno, T., Goda, N., Tochio, H., Kobayashi, H., Hiroaki, H., and Shirakawa, M. (2005) Structure of the UBA domain of Dsk2p in complex with ubiquitin: molecular determinants for ubiquitin recognition. Structure 13, 521-532
-
(2005)
Structure
, vol.13
, pp. 521-532
-
-
Ohno, A.1
Jee, J.G.2
Fujiwara, K.3
Tenno, T.4
Goda, N.5
Tochio, H.6
Kobayashi, H.7
Hiroaki, H.8
Shirakawa, M.9
-
62
-
-
39649120317
-
-
Zhang, D., Raasi, S., and Fushman, D. J. (2008) Mol. Biol. 377, 162-180
-
(2008)
Mol. Biol.
, vol.377
, pp. 162-180
-
-
Zhang, D.1
Raasi, S.2
Fushman, D.J.3
-
63
-
-
34547807613
-
Global changes to the ubiquitin system in Huntington's disease
-
Bennett, E. J., Shaler, T. A., Woodman, B., Ryu, K. Y., Zaitseva, T. S., Becker, C. H., Bates, G. P., Schulman, H., and Kopito, R. R. (2007)Global changes to the ubiquitin system in Huntington's disease. Nature 448, 704-708
-
(2007)
Nature
, vol.448
, pp. 704-708
-
-
Bennett, E.J.1
Shaler, T.A.2
Woodman, B.3
Ryu, K.Y.4
Zaitseva, T.S.5
Becker, C.H.6
Bates, G.P.7
Schulman, H.8
Kopito, R.R.9
-
64
-
-
33646036373
-
Crystal structure of the ubiquitin binding domains of rabex-5 reveals two modes of interaction with ubiquitin
-
Penengo, L., Mapelli, M., Murachelli, A. G., Confalonieri, S., Magri, L., Musacchio, A., Di Fiore, P. P., Polo, S., and Schneider, T. R.. (2006)Crystal structure of the ubiquitin binding domains of rabex-5 reveals two modes of interaction with ubiquitin. Cell 124, 1183-1195
-
(2006)
Cell
, vol.124
, pp. 1183-1195
-
-
Penengo, L.1
Mapelli, M.2
Murachelli, A.G.3
Confalonieri, S.4
Magri, L.5
Musacchio, A.6
Di Fiore, P.P.7
Polo, S.8
Schneider, T.R.9
-
65
-
-
33746541576
-
HDAC6-p97/ VCP controlled polyubiquitin chain turnover
-
Boyault, C., Gilquin, B., Zhang, Y., Rybin, V., Garman, E., Meyer-Klaucke, W., Matthias, P., Müller, C. W., and Khochbin, S. (2006) HDAC6-p97/ VCP controlled polyubiquitin chain turnover. EMBO J. 25, 3357-3366
-
(2006)
EMBO J.
, vol.25
, pp. 3357-3366
-
-
Boyault, C.1
Gilquin, B.2
Zhang, Y.3
Rybin, V.4
Garman, E.5
Meyer-Klaucke, W.6
Matthias, P.7
Müller, C.W.8
Khochbin, S.9
|