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Volumn 8, Issue , 2017, Pages

Corrigendum: Proteogenomic integration reveals therapeutic targets in breast cancer xenografts (Nature Communications (2017) 8 (14864) DOI: 10.1038/ncomms14864);Proteogenomic integration reveals therapeutic targets in breast cancer xenografts

(45)  Huang, Kuan Lin a   Li, Shunqiang a   Mertins, Philipp b   Cao, Song a   Gunawardena, Harsha P c   Ruggles, Kelly V d   Mani, D R b   Clauser, Karl R b   Tanioka, Maki e   Usary, Jerry e   Kavuri, Shyam M f   Xie, Ling c   Yoon, Christopher a   Qiao, Jana W b   Wrobel, John c   Wyczalkowski, Matthew A a   Erdmann Gilmore, Petra a   Snider, Jacqueline E a   Hoog, Jeremy a   Singh, Purba f   more..


Author keywords

[No Author keywords available]

Indexed keywords

A RAF KINASE; B RAF KINASE; EPIDERMAL GROWTH FACTOR RECEPTOR 2; HEAT SHOCK PROTEIN 90; HSP90AB1 PROTEIN; LAPATINIB; MESSENGER RNA; PERTUZUMAB; PHOSPHATIDYLINOSITOL 3 KINASE; PHOSPHOPROTEIN; PROTEIN KINASE B; PROTEIN TYROSINE KINASE; SAPANISERTIB; SERABELISIB; TRASTUZUMAB; UNCLASSIFIED DRUG; TRANSCRIPTOME;

EID: 85016396817     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms15479     Document Type: Erratum
Times cited : (112)

References (51)
  • 1
    • 79951472909 scopus 로고    scopus 로고
    • National human genome research, I. Charting a course for genomic medicine from base pairs to bedside
    • Green, E. D. & Guyer, M. S. National Human Genome Research, I. Charting a course for genomic medicine from base pairs to bedside. Nature 470, 204-213 (2011).
    • (2011) Nature , vol.470 , pp. 204-213
    • Green, E.D.1    Guyer, M.S.2
  • 2
    • 84859187259 scopus 로고    scopus 로고
    • Systematic identification of genomic markers of drug sensitivity in cancer cells
    • Garnett, M. J. et al. Systematic identification of genomic markers of drug sensitivity in cancer cells. Nature 483, 570-575 (2012).
    • (2012) Nature , vol.483 , pp. 570-575
    • Garnett, M.J.1
  • 3
    • 84924279179 scopus 로고    scopus 로고
    • In silico prescription of anticancer drugs to cohorts of 28 tumor types reveals targeting opportunities
    • Rubio-Perez, C. et al. In silico prescription of anticancer drugs to cohorts of 28 tumor types reveals targeting opportunities. Cancer Cell 27, 382-396 (2015).
    • (2015) Cancer Cell , vol.27 , pp. 382-396
    • Rubio-Perez, C.1
  • 4
    • 84877278637 scopus 로고    scopus 로고
    • Implementing personalized cancer genomics in clinical trials
    • Simon, R. & Roychowdhury, S. Implementing personalized cancer genomics in clinical trials. Nat. Rev. Drug Discov. 12, 358-369 (2013).
    • (2013) Nat. Rev. Drug Discov. , vol.12 , pp. 358-369
    • Simon, R.1    Roychowdhury, S.2
  • 5
    • 79952395270 scopus 로고    scopus 로고
    • Cancer genomics: From discovery science to personalized medicine
    • Chin, L., Andersen, J. N. & Futreal, P. A. Cancer genomics: from discovery science to personalized medicine. Nat. Med. 17, 297-303 (2011).
    • (2011) Nat. Med. , vol.17 , pp. 297-303
    • Chin, L.1    Andersen, J.N.2    Futreal, P.A.3
  • 6
    • 84884559238 scopus 로고    scopus 로고
    • Endocrine-therapy-resistant ESR1 variants revealed by genomic characterization of breast-cancer-derived xenografts
    • Li, S. et al. Endocrine-therapy-resistant ESR1 variants revealed by genomic characterization of breast-cancer-derived xenografts. Cell Rep. 4, 1116-1130 (2013).
    • (2013) Cell Rep. , vol.4 , pp. 1116-1130
    • Li, S.1
  • 7
    • 84861719757 scopus 로고    scopus 로고
    • Patient-derived tumour xenografts as models for oncology drug development
    • Tentler, J. J. et al. Patient-derived tumour xenografts as models for oncology drug development. Nat. Rev. Clin. Oncol. 9, 338-350 (2012).
    • (2012) Nat. Rev. Clin. Oncol. , vol.9 , pp. 338-350
    • Tentler, J.J.1
  • 8
    • 77951139631 scopus 로고    scopus 로고
    • Genome remodelling in a basal-like breast cancer metastasis and xenograft
    • Ding, L. et al. Genome remodelling in a basal-like breast cancer metastasis and xenograft. Nature 464, 999-1005 (2010).
    • (2010) Nature , vol.464 , pp. 999-1005
    • Ding, L.1
  • 9
    • 84874017631 scopus 로고    scopus 로고
    • Initial assessment of the pathogenic mechanisms of the recently identified Alzheimer risk Loci
    • Holton, P. et al. Initial assessment of the pathogenic mechanisms of the recently identified Alzheimer risk Loci. Ann. Hum. Genet. 77, 85-105 (2013).
    • (2013) Ann. Hum. Genet. , vol.77 , pp. 85-105
    • Holton, P.1
  • 10
    • 84928015067 scopus 로고    scopus 로고
    • Proteomic profiling of patient-derived glioblastoma xenografts identifies a subset with activated EGFR: Implications for drug development
    • Brown, K. E. et al. Proteomic profiling of patient-derived glioblastoma xenografts identifies a subset with activated EGFR: implications for drug development. J. Neurochem. 133, 730-738 (2015).
    • (2015) J. Neurochem. , vol.133 , pp. 730-738
    • Brown, K.E.1
  • 11
    • 84962226262 scopus 로고    scopus 로고
    • Proteomic characterization of head and neck cancer patient-derived xenografts
    • Li, H. et al. Proteomic characterization of head and neck cancer patient-derived xenografts. Mol. Cancer Res. 14, 278-286 (2016).
    • (2016) Mol. Cancer Res. , vol.14 , pp. 278-286
    • Li, H.1
  • 12
    • 84901599553 scopus 로고    scopus 로고
    • A draft map of the human proteome
    • Kim, M. S. et al. A draft map of the human proteome. Nature 509, 575-581 (2014).
    • (2014) Nature , vol.509 , pp. 575-581
    • Kim, M.S.1
  • 13
    • 84907269780 scopus 로고    scopus 로고
    • Proteogenomic characterization of human colon and rectal cancer
    • Zhang, B. et al. Proteogenomic characterization of human colon and rectal cancer. Nature 513, 382-387 (2014).
    • (2014) Nature , vol.513 , pp. 382-387
    • Zhang, B.1
  • 14
    • 84973617999 scopus 로고    scopus 로고
    • Proteogenomics connects somatic mutations to signalling in breast cancer
    • Mertins, P. et al. Proteogenomics connects somatic mutations to signalling in breast cancer. Nature 534, 55-62 (2016).
    • (2016) Nature , vol.534 , pp. 55-62
    • Mertins, P.1
  • 15
    • 84977611330 scopus 로고    scopus 로고
    • Integrated proteogenomic characterization of human high-grade serous ovarian cancer
    • Zhang, H. et al. Integrated proteogenomic characterization of human high-grade serous ovarian cancer. Cell 166, 755-765 (2016).
    • (2016) Cell , vol.166 , pp. 755-765
    • Zhang, H.1
  • 16
    • 84915751035 scopus 로고    scopus 로고
    • Isobaric labeling-based relative quantification in shotgun proteomics
    • Rauniyar, N. & Yates, 3rd J. R. Isobaric labeling-based relative quantification in shotgun proteomics. J. Proteome Res. 13, 5293-5309 (2014).
    • (2014) J. Proteome Res. , vol.13 , pp. 5293-5309
    • Rauniyar, N.1    Yates, J.R.2
  • 17
    • 84948992756 scopus 로고    scopus 로고
    • Patient-derived tumor xenografts are susceptible to formation of human lymphocytic tumors
    • Bondarenko, G. et al. Patient-derived tumor xenografts are susceptible to formation of human lymphocytic tumors. Neoplasia 17, 735-741 (2015).
    • (2015) Neoplasia , vol.17 , pp. 735-741
    • Bondarenko, G.1
  • 18
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto encyclopedia of genes and genomes
    • Kanehisa, M. & Goto, S. KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 28, 27-30 (2000).
    • (2000) Nucleic Acids Res. , vol.28 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 19
    • 78951482208 scopus 로고    scopus 로고
    • Deconstructing the molecular portraits of breast cancer
    • Prat, A. & Perou, C. M. Deconstructing the molecular portraits of breast cancer. Mol. Oncol. 5, 5-23 (2011).
    • (2011) Mol. Oncol. , vol.5 , pp. 5-23
    • Prat, A.1    Perou, C.M.2
  • 20
    • 0037478605 scopus 로고    scopus 로고
    • Repeated observation of breast tumor subtypes in independent gene expression data sets
    • Sorlie, T. et al. Repeated observation of breast tumor subtypes in independent gene expression data sets. Proc. Natl Acad. Sci. USA 100, 8418-8423 (2003).
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 8418-8423
    • Sorlie, T.1
  • 21
    • 84891753483 scopus 로고    scopus 로고
    • The Reactome pathway knowledgebase
    • Croft, D. et al. The Reactome pathway knowledgebase. Nucleic Acids Res. 42, D472-D477 (2014).
    • (2014) Nucleic Acids Res. , vol.42 , pp. D472-D477
    • Croft, D.1
  • 22
    • 84877028141 scopus 로고    scopus 로고
    • Comprehensive molecular portraits of human breast tumours
    • Cancer Genome Atlas Network
    • Cancer Genome Atlas Network. Comprehensive molecular portraits of human breast tumours. Nature 490, 61-70 (2012).
    • (2012) Nature , vol.490 , pp. 61-70
  • 23
    • 77955046517 scopus 로고    scopus 로고
    • Genomic and biological characterization of exon 4 KRAS mutations in human cancer
    • Janakiraman, M. et al. Genomic and biological characterization of exon 4 KRAS mutations in human cancer. Cancer Res. 70, 5901-5911 (2010).
    • (2010) Cancer Res. , vol.70 , pp. 5901-5911
    • Janakiraman, M.1
  • 24
    • 33751165545 scopus 로고    scopus 로고
    • Recurrent KRAS codon 146 mutations in human colorectal cancer
    • Edkins, S. et al. Recurrent KRAS codon 146 mutations in human colorectal cancer. Cancer Biol. Ther. 5, 928-932 (2006).
    • (2006) Cancer Biol. Ther. , vol.5 , pp. 928-932
    • Edkins, S.1
  • 25
    • 41449105551 scopus 로고    scopus 로고
    • HER2 status and benefit from adjuvant trastuzumab in breast cancer
    • Paik, S., Kim, C. & Wolmark, N. HER2 status and benefit from adjuvant trastuzumab in breast cancer. N. Engl. J. Med. 358, 1409-1411 (2008).
    • (2008) N. Engl. J. Med. , vol.358 , pp. 1409-1411
    • Paik, S.1    Kim, C.2    Wolmark, N.3
  • 26
    • 0022102126 scopus 로고
    • Down- modulation of an oncogene protein product and reversion of the transformed phenotype by monoclonal antibodies
    • Drebin, J. A., Link, V. C., Stern, D. F., Weinberg, R. A. & Greene, M. I. Down- modulation of an oncogene protein product and reversion of the transformed phenotype by monoclonal antibodies. Cell 41, 697-706 (1985).
    • (1985) Cell , vol.41 , pp. 697-706
    • Drebin, J.A.1    Link, V.C.2    Stern, D.F.3    Weinberg, R.A.4    Greene, M.I.5
  • 27
    • 0026610881 scopus 로고
    • Humanization ofan anti-p185HER2 antibodyfor human cancer therapy
    • Carter, P. etal. Humanization ofan anti-p185HER2 antibodyfor human cancer therapy. Proc. Natl Acad. Sci. USA 89, 4285-4289 (1992).
    • (1992) Proc. Natl Acad. Sci. USA , vol.89 , pp. 4285-4289
    • Carter, P.1
  • 28
    • 52049111595 scopus 로고    scopus 로고
    • Synergistic inhibition with a dual epidermal growth factor receptor/HER-2/neu tyrosine kinase inhibitor and a disintegrin and metalloprotease inhibitor
    • Witters, L. et al. Synergistic inhibition with a dual epidermal growth factor receptor/HER-2/neu tyrosine kinase inhibitor and a disintegrin and metalloprotease inhibitor. Cancer Res. 68, 7083-7089 (2008).
    • (2008) Cancer Res. , vol.68 , pp. 7083-7089
    • Witters, L.1
  • 29
    • 51549083821 scopus 로고    scopus 로고
    • Lapatinib: A dual inhibitor of human epidermal growth factor receptor tyrosine kinases
    • Medina, P. J. & Goodin, S. Lapatinib: a dual inhibitor of human epidermal growth factor receptor tyrosine kinases. Clin. Ther. 30, 1426-1447 (2008).
    • (2008) Clin. Ther. , vol.30 , pp. 1426-1447
    • Medina, P.J.1    Goodin, S.2
  • 30
    • 68249093818 scopus 로고    scopus 로고
    • Targeting the phosphoinositide 3-kinase pathway in cancer
    • Liu, P., Cheng, H., Roberts, T. M. & Zhao, J. J. Targeting the phosphoinositide 3-kinase pathway in cancer. Nat. Rev. Drug Discov. 8, 627-644 (2009).
    • (2009) Nat. Rev. Drug Discov. , vol.8 , pp. 627-644
    • Liu, P.1    Cheng, H.2    Roberts, T.M.3    Zhao, J.J.4
  • 31
    • 84863078767 scopus 로고    scopus 로고
    • Everolimus in postmenopausal hormone-receptor-positive advanced breast cancer
    • Baselga, J. et al. Everolimus in postmenopausal hormone-receptor-positive advanced breast cancer. N. Engl. J. Med. 366, 520-529 (2012).
    • (2012) N. Engl. J. Med. , vol.366 , pp. 520-529
    • Baselga, J.1
  • 32
    • 84904724740 scopus 로고    scopus 로고
    • Stand up to cancer phase Ib study of pan-phosphoinositide-3-kinase inhibitor buparlisib with letrozole in estrogen receptor-positive/human epidermal growth factor receptor 2-negative metastatic breast cancer
    • Mayer, I. A. et al. Stand up to cancer phase Ib study of pan-phosphoinositide-3-kinase inhibitor buparlisib with letrozole in estrogen receptor-positive/human epidermal growth factor receptor 2-negative metastatic breast cancer. J. Clin. Oncol. 32, 1202-1209 (2014).
    • (2014) J. Clin. Oncol. , vol.32 , pp. 1202-1209
    • Mayer, I.A.1
  • 33
    • 84856071447 scopus 로고    scopus 로고
    • Phase I, dose-escalation studyofBKM120, an oralpan-Class i PI3K inhibitor, in patients with advanced solid tumors
    • Bendell, J. C. et al. Phase I, dose-escalation studyofBKM120, an oralpan-Class I PI3K inhibitor, in patients with advanced solid tumors. J. Clin. Oncol. 30, 282-290 (2012).
    • (2012) J. Clin. Oncol. , vol.30 , pp. 282-290
    • Bendell, J.C.1
  • 34
    • 84901465453 scopus 로고    scopus 로고
    • Patient-derived xenografts of triple-negative breast cancer reproduce molecular features of patient tumors and respond to mTOR inhibition
    • Zhang, H. et al. Patient-derived xenografts of triple-negative breast cancer reproduce molecular features of patient tumors and respond to mTOR inhibition. Breast Cancer Res. 16, R36 (2014).
    • (2014) Breast Cancer Res. , vol.16 , pp. R36
    • Zhang, H.1
  • 35
    • 84882261589 scopus 로고    scopus 로고
    • Combined targeting of mTOR and AKT is an effective strategy for basal-like breast cancer in patient-derived xenograft models
    • Xu, S. et al. Combined targeting of mTOR and AKT is an effective strategy for basal-like breast cancer in patient-derived xenograft models. Mol. Cancer Ther. 12, 1665-1675 (2013).
    • (2013) Mol. Cancer Ther. , vol.12 , pp. 1665-1675
    • Xu, S.1
  • 36
    • 77951981110 scopus 로고    scopus 로고
    • Classification and prognosis of invasive breast cancer: From morphology to molecular taxonomy
    • Schnitt, S. J. Classification and prognosis of invasive breast cancer: from morphology to molecular taxonomy. Mod. Pathol. 23, S60-S64 (2010).
    • (2010) Mod. Pathol. , vol.23 , pp. S60-S64
    • Schnitt, S.J.1
  • 37
    • 84881225049 scopus 로고    scopus 로고
    • Targeting BTK with ibrutinib in relapsed or refractory mantle-cell lymphoma
    • Wang, M. L. et al. Targeting BTK with ibrutinib in relapsed or refractory mantle-cell lymphoma. N. Engl. J. Med. 369, 507-516 (2013).
    • (2013) N. Engl. J. Med. , vol.369 , pp. 507-516
    • Wang, M.L.1
  • 38
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows- Wheeler transform
    • Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows- Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 39
    • 84863229597 scopus 로고    scopus 로고
    • VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
    • Koboldt, D. C. et al. VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing. Genome Res. 22, 568-576 (2012).
    • (2012) Genome Res. , vol.22 , pp. 568-576
    • Koboldt, D.C.1
  • 40
    • 84896321422 scopus 로고    scopus 로고
    • Using VarScan 2 for germline variant calling and somatic mutation detection
    • Koboldt, D. C., Larson, D. E. & Wilson, R. K. Using VarScan 2 for germline variant calling and somatic mutation detection. Curr. Protoc. Bioinformatics 44, 15.4.1-15.4.17 (2013).
    • (2013) Curr. Protoc. Bioinformatics , vol.44 , pp. 1541-15417
    • Koboldt, D.C.1    Larson, D.E.2    Wilson, R.K.3
  • 41
    • 69949122158 scopus 로고    scopus 로고
    • VarScan: Variant detection in massively parallel sequencing of individual and pooled samples
    • Koboldt, D. C. et al. VarScan: variant detection in massively parallel sequencing of individual and pooled samples. Bioinformatics 25, 2283-2285 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 2283-2285
    • Koboldt, D.C.1
  • 42
    • 84928995001 scopus 로고    scopus 로고
    • RIG: Recalibration and interrelation of genomic sequence data with the GATK
    • McCormick, R. F., Truong, S. K. & Mullet, J. E. RIG: Recalibration and interrelation of genomic sequence data with the GATK. G3 (Bethesda) 5, 655-665 (2015).
    • (2015) G3 (Bethesda) , vol.5 , pp. 655-665
    • McCormick, R.F.1    Truong, S.K.2    Mullet, J.E.3
  • 43
    • 70350694443 scopus 로고    scopus 로고
    • Pindel: A pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads
    • Ye, K., Schulz, M. H., Long, Q., Apweiler, R. & Ning, Z. Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads. Bioinformatics 25, 2865-2871 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 2865-2871
    • Ye, K.1    Schulz, M.H.2    Long, Q.3    Apweiler, R.4    Ning, Z.5
  • 44
    • 79961123152 scopus 로고    scopus 로고
    • RSEM: Accurate transcript quantification from RNA-Seq data with or without a reference genome
    • Li, B. & Dewey, C. N. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinformatics 12, 323 (2011).
    • (2011) BMC Bioinformatics , vol.12 , pp. 323
    • Li, B.1    Dewey, C.N.2
  • 45
    • 78649345104 scopus 로고    scopus 로고
    • MapSplice: Accurate mapping of RNA-seq reads for splice junction discovery
    • Wang, K. et al. MapSplice: accurate mapping of RNA-seq reads for splice junction discovery. Nucleic Acids Res. 38, e178 (2010).
    • (2010) Nucleic Acids Res. , vol.38 , pp. e178
    • Wang, K.1
  • 46
    • 84904111890 scopus 로고    scopus 로고
    • Ischemia in tumors induces early and sustained phosphorylation changes in stress kinase pathways but does not affect global protein levels
    • Mertins, P. et al. Ischemia in tumors induces early and sustained phosphorylation changes in stress kinase pathways but does not affect global protein levels. Mol. Cell Proteomics 13, 1690-1704 (2014).
    • (2014) Mol. Cell Proteomics , vol.13 , pp. 1690-1704
    • Mertins, P.1
  • 47
    • 84885647278 scopus 로고    scopus 로고
    • Connecting genomic alterations to cancer biology with proteomics: The NCI Clinical Proteomic Tumor Analysis Consortium
    • Ellis, M. J. et al. Connecting genomic alterations to cancer biology with proteomics: the NCI Clinical Proteomic Tumor Analysis Consortium. Cancer Discov. 3, 1108-1112 (2013).
    • (2013) Cancer Discov. , vol.3 , pp. 1108-1112
    • Ellis, M.J.1
  • 48
    • 84907197082 scopus 로고    scopus 로고
    • Accurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ
    • Cox, J. et al. Accurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ. Mol. Cell Proteomics 13, 2513-2526 (2014).
    • (2014) Mol. Cell Proteomics , vol.13 , pp. 2513-2526
    • Cox, J.1
  • 49
    • 84960343160 scopus 로고    scopus 로고
    • Reproducibility of differential proteomic technologies in CPTAC fractionated xenografts
    • Tabb, D. L. et al. Reproducibility of differential proteomic technologies in CPTAC fractionated xenografts. J Proteome Res. 15, 691-706 (2016).
    • (2016) J Proteome Res. , vol.15 , pp. 691-706
    • Tabb, D.L.1
  • 50
    • 84879637572 scopus 로고    scopus 로고
    • Integrated proteomic analysis of post-translational modifications by serial enrichment
    • Mertins, P. et al. Integrated proteomic analysis of post-translational modifications by serial enrichment. Nat. Methods 10, 634-637 (2013).
    • (2013) Nat. Methods , vol.10 , pp. 634-637
    • Mertins, P.1
  • 51
    • 60549111634 scopus 로고    scopus 로고
    • WGCNA: An R package for weighted correlation network analysis
    • Langfelder, P. & Horvath, S. WGCNA: an R package for weighted correlation network analysis. BMC Bioinformatics 9, 559 (2008).
    • (2008) BMC Bioinformatics , vol.9 , pp. 559
    • Langfelder, P.1    Horvath, S.2


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