-
1
-
-
71449100076
-
Mapping the tree of life: Progress and prospects
-
Pace, N. R. Mapping the tree of life: Progress and prospects. Microbiol. Mol. Biol. Rev. 73, 565–576 (2009).
-
(2009)
Microbiol. Mol. Biol. Rev.
, vol.73
, pp. 565-576
-
-
Pace, N.R.1
-
2
-
-
84863981120
-
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
-
Caporaso, J. G. et al. Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms. ISME J. 6, 1621–1624 (2012).
-
(2012)
ISME J
, vol.6
, pp. 1621-1624
-
-
Caporaso, J.G.1
-
3
-
-
84906272014
-
Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences
-
Yarza, P. et al. Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences. Nature Rev. Microbiol. 12, 635–645 (2014).
-
(2014)
Nature Rev. Microbiol.
, vol.12
, pp. 635-645
-
-
Yarza, P.1
-
4
-
-
84936942726
-
Unusual biology across a group comprising more than 15% of domain Bacteria
-
Brown, C. T. et al. Unusual biology across a group comprising more than 15% of domain Bacteria. Nature 523, 208–211 (2015).
-
(2015)
Nature
, vol.523
, pp. 208-211
-
-
Brown, C.T.1
-
5
-
-
84926417610
-
Genomic expansion of domain archaea highlights roles for organisms from new phyla in anaerobic carbon cycling
-
Castelle, C. J. et al. Genomic expansion of domain archaea highlights roles for organisms from new phyla in anaerobic carbon cycling. Curr. Biol. 25, 690–701 (2015).
-
(2015)
Curr. Biol.
, vol.25
, pp. 690-701
-
-
Castelle, C.J.1
-
6
-
-
84881138595
-
Insights into the phylogeny and coding potential of microbial dark matter
-
Rinke, C. et al. Insights into the phylogeny and coding potential of microbial dark matter. Nature 499, 431–437 (2013).
-
(2013)
Nature
, vol.499
, pp. 431-437
-
-
Rinke, C.1
-
7
-
-
84925163899
-
Ecology and exploration of the rare biosphere
-
Lynch, M. D. J. & Neufeld, J. D. Ecology and exploration of the rare biosphere. Nature Rev. Microbiol. 13, 217–229 (2015).
-
(2015)
Nature Rev. Microbiol.
, vol.13
, pp. 217-229
-
-
Lynch, M.D.J.1
Neufeld, J.D.2
-
8
-
-
77951498638
-
Experimental factors affecting PCR-based estimates of microbial species richness and evenness
-
Engelbrektson, A. et al. Experimental factors affecting PCR-based estimates of microbial species richness and evenness. ISME J. 4, 642–647 (2010).
-
(2010)
ISME J
, vol.4
, pp. 642-647
-
-
Engelbrektson, A.1
-
9
-
-
84909607976
-
Searching for new branches on the tree of life
-
Woyke, T. & Rubin, E. M. Searching for new branches on the tree of life. Science 346, 698–699 (2014).
-
(2014)
Science
, vol.346
, pp. 698-699
-
-
Woyke, T.1
Rubin, E.M.2
-
10
-
-
84891800783
-
IMG/M 4 version of the integrated metagenome comparative analysis system
-
Markowitz, V. M. et al. IMG/M 4 version of the integrated metagenome comparative analysis system. Nucleic Acids Res. 42, D568–D573 (2014).
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D568-D573
-
-
Markowitz, V.M.1
-
11
-
-
79959794996
-
The Earth Microbiome Project: Meeting report of the ‘1st EMP meeting on sample selection and acquisition’ at Argonne National Laboratory October 6th 2010
-
Gilbert, J. A. et al. The Earth Microbiome Project: Meeting report of the ‘1st EMP meeting on sample selection and acquisition’ at Argonne National Laboratory October 6th 2010. Stand. Genomic Sci. 3, 249–253 (2010).
-
(2010)
Stand. Genomic Sci.
, vol.3
, pp. 249-253
-
-
Gilbert, J.A.1
-
12
-
-
84952035459
-
Every base matters: Assessing small subunit rRNA primers for marine microbiomes with mock communities, time-series and global field samples
-
Parada, A., Needham, D. M. & Fuhrman, J. A. Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time-series and global field samples. Environ. Microbiol. http://dx.doi.org/10.1111/1462-2920.13023 (2015).
-
(2015)
Environ. Microbiol.
-
-
Parada, A.1
Needham, D.M.2
Fuhrman, J.A.3
-
13
-
-
84871808499
-
Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
-
Klindworth, A. et al. Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies. Nucleic Acids Res. 41, e1 (2013).
-
(2013)
Nucleic Acids Res
, vol.41
, pp. e1
-
-
Klindworth, A.1
-
14
-
-
84862276328
-
Structure, function and diversity of the healthy human microbiome
-
The Human Microbiome Consortium. Structure, function and diversity of the healthy human microbiome. Nature 486, 207–214 (2012).
-
(2012)
Nature
, vol.486
, pp. 207-214
-
-
-
15
-
-
84929329445
-
Complex archaea that bridge the gap between prokaryotes and eukaryotes
-
Spang, A. et al. Complex archaea that bridge the gap between prokaryotes and eukaryotes. Nature 521, 173–179 (2015).
-
(2015)
Nature
, vol.521
, pp. 173-179
-
-
Spang, A.1
-
16
-
-
84879678051
-
Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
-
Albertsen, M. et al. Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes. Nature Biotechnol. 31, 533–538 (2013).
-
(2013)
Nature Biotechnol
, vol.31
, pp. 533-538
-
-
Albertsen, M.1
-
17
-
-
79954506754
-
PrimerProspector: De novo design and taxonomic analysis of barcoded polymerase chain reaction primers
-
Walters, W. A. et al. PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers. Bioinformatics 27, 1159–1161 (2011).
-
(2011)
Bioinformatics
, vol.27
, pp. 1159-1161
-
-
Walters, W.A.1
-
18
-
-
0036226603
-
BLAT—The BLAST-Like Alignment Tool
-
Kent, W. BLAT—The BLAST-Like Alignment Tool. Genome Res. 12, 656–664 (2002).
-
(2002)
Genome Res
, vol.12
, pp. 656-664
-
-
Kent, W.1
-
19
-
-
84890037468
-
Infernal 1.1: 100-fold faster RNA homology searches
-
Nawrocki, E. P. & Eddy, S. R. Infernal 1.1: 100-fold faster RNA homology searches. Bioinformatics 29, 2933–2935 (2013).
-
(2013)
Bioinformatics
, vol.29
, pp. 2933-2935
-
-
Nawrocki, E.P.1
Eddy, S.R.2
-
20
-
-
33750403801
-
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis, A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22, 2688–2690 (2006).
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
21
-
-
2142738304
-
WebLogo: A sequence logo generator
-
Crooks, G. E. et al. WebLogo: a sequence logo generator. Genome Res. 14, 1188–1190 (2004).
-
(2004)
Genome Res
, vol.14
, pp. 1188-1190
-
-
Crooks, G.E.1
|