메뉴 건너뛰기




Volumn 19, Issue 3, 2017, Pages 835-841

Oscillospira and related bacteria – From metagenomic species to metabolic features

Author keywords

[No Author keywords available]

Indexed keywords

BUTYRIC ACID DERIVATIVE; RNA 16S;

EID: 85015808073     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/1462-2920.13658     Document Type: Article
Times cited : (306)

References (53)
  • 1
    • 84988372530 scopus 로고    scopus 로고
    • The gut microbiota and metabolic disease: current understanding and future perspectives
    • Arora, T., and Backhed, F. (2016) The gut microbiota and metabolic disease: current understanding and future perspectives. J Intern Med 280: 339–349.
    • (2016) J Intern Med , vol.280 , pp. 339-349
    • Arora, T.1    Backhed, F.2
  • 4
    • 80053253206 scopus 로고    scopus 로고
    • Biology of Clostridium difficile: implications for epidemiology and diagnosis
    • Carroll, K.C., and Bartlett, J.G. (2011) Biology of Clostridium difficile: implications for epidemiology and diagnosis. Annu Rev Microbiol 65: 501–521.
    • (2011) Annu Rev Microbiol , vol.65 , pp. 501-521
    • Carroll, K.C.1    Bartlett, J.G.2
  • 6
    • 84893859801 scopus 로고    scopus 로고
    • The microbial metabolite butyrate regulates intestinal macrophage function via histone deacetylase inhibition
    • Chang, P.V., Hao, L., Offermanns, S., and Medzhitov, R. (2014) The microbial metabolite butyrate regulates intestinal macrophage function via histone deacetylase inhibition. Proc Natl Acad Sci U S A 111: 2247–2252.
    • (2014) Proc Natl Acad Sci U S A , vol.111 , pp. 2247-2252
    • Chang, P.V.1    Hao, L.2    Offermanns, S.3    Medzhitov, R.4
  • 7
    • 84940062399 scopus 로고    scopus 로고
    • Isolation of genetically tractable most-wanted bacteria by metaparental mating
    • Cuiv, P.O., Smith, W.J., Pottenger, S., Burman, S., Shanahan, E.R., and Morrison, M. (2015) Isolation of genetically tractable most-wanted bacteria by metaparental mating. Sci Rep 5: 13282.
    • (2015) Sci Rep , vol.5 , pp. 13282
    • Cuiv, P.O.1    Smith, W.J.2    Pottenger, S.3    Burman, S.4    Shanahan, E.R.5    Morrison, M.6
  • 8
    • 84989285235 scopus 로고    scopus 로고
    • Butyrate and mucosal inflammation: New scientific evidence supports clinical observation
    • Cushing, K., Alvarado, D.M., and Ciorba, M.A. (2015) Butyrate and mucosal inflammation: New scientific evidence supports clinical observation. Clin Transl Gastroenterol 6: e108.
    • (2015) Clin Transl Gastroenterol , vol.6
    • Cushing, K.1    Alvarado, D.M.2    Ciorba, M.A.3
  • 10
    • 84881550079 scopus 로고    scopus 로고
    • Butyricicoccus pullicaecorum in inflammatory bowel disease
    • Eeckhaut, V., Machiels, K., Perrier, C., Romero, C., Maes, S., Flahou, B., et al. (2013) Butyricicoccus pullicaecorum in inflammatory bowel disease. Gut 62: 1745–1752.
    • (2013) Gut , vol.62 , pp. 1745-1752
    • Eeckhaut, V.1    Machiels, K.2    Perrier, C.3    Romero, C.4    Maes, S.5    Flahou, B.6
  • 11
    • 84946023382 scopus 로고    scopus 로고
    • Type material in the NCBI Taxonomy Database
    • Federhen, S. (2015) Type material in the NCBI Taxonomy Database. Nucleic Acids Res 43: D1086–D1098.
    • (2015) Nucleic Acids Res , vol.43 , pp. D1086-D1098
    • Federhen, S.1
  • 12
    • 84890564250 scopus 로고    scopus 로고
    • Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells
    • Furusawa, Y., Obata, Y., Fukuda, S., Endo, T.A., Nakato, G., Takahashi, D., et al. (2013) Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells. Nature 504: 446–450.
    • (2013) Nature , vol.504 , pp. 446-450
    • Furusawa, Y.1    Obata, Y.2    Fukuda, S.3    Endo, T.A.4    Nakato, G.5    Takahashi, D.6
  • 13
    • 84941067064 scopus 로고    scopus 로고
    • Expanded microbial genome coverage and improved protein family annotation in the COG database
    • Galperin, M.Y., Makarova, K.S., Wolf, Y.I., and Koonin, E.V. (2015) Expanded microbial genome coverage and improved protein family annotation in the COG database. Nucleic Acids Res 43: D261–D269.
    • (2015) Nucleic Acids Res , vol.43 , pp. D261-D269
    • Galperin, M.Y.1    Makarova, K.S.2    Wolf, Y.I.3    Koonin, E.V.4
  • 15
    • 17644427399 scopus 로고    scopus 로고
    • Increased deoxycholic acid absorption and gall stones in acromegalic patients treated with octreotide: more evidence for a connection between slow transit constipation and gall stones
    • Hofmann, A.F. (2005) Increased deoxycholic acid absorption and gall stones in acromegalic patients treated with octreotide: more evidence for a connection between slow transit constipation and gall stones. Gut 54: 575–578.
    • (2005) Gut , vol.54 , pp. 575-578
    • Hofmann, A.F.1
  • 16
    • 34548163396 scopus 로고    scopus 로고
    • Oscillibacter valericigenes gen. nov., sp. nov., a valerate-producing anaerobic bacterium isolated from the alimentary canal of a Japanese corbicula clam
    • Iino, T., Mori, K., Tanaka, K., Suzuki, K., and Harayama, S. (2007) Oscillibacter valericigenes gen. nov., sp. nov., a valerate-producing anaerobic bacterium isolated from the alimentary canal of a Japanese corbicula clam. Int J Syst Evol Microbiol 57: 1840–1845.
    • (2007) Int J Syst Evol Microbiol , vol.57 , pp. 1840-1845
    • Iino, T.1    Mori, K.2    Tanaka, K.3    Suzuki, K.4    Harayama, S.5
  • 17
    • 0033806838 scopus 로고    scopus 로고
    • Toxins, butyric acid, and other short-chain fatty acids are coordinately expressed and down-regulated by cysteine in Clostridium difficile
    • Karlsson, S., Lindberg, A., Norin, E., Burman, L.G., and Akerlund, T. (2000) Toxins, butyric acid, and other short-chain fatty acids are coordinately expressed and down-regulated by cysteine in Clostridium difficile. Infect Immun 68: 5881–5888.
    • (2000) Infect Immun , vol.68 , pp. 5881-5888
    • Karlsson, S.1    Lindberg, A.2    Norin, E.3    Burman, L.G.4    Akerlund, T.5
  • 18
    • 84878709716 scopus 로고    scopus 로고
    • Gut metagenome in European women with normal, impaired and diabetic glucose control
    • Karlsson, F.H., Tremaroli, V., Nookaew, I., Bergstrom, G., Behre, C.J., Fagerberg, B., et al. (2013) Gut metagenome in European women with normal, impaired and diabetic glucose control. Nature 498: 99–103.
    • (2013) Nature , vol.498 , pp. 99-103
    • Karlsson, F.H.1    Tremaroli, V.2    Nookaew, I.3    Bergstrom, G.4    Behre, C.J.5    Fagerberg, B.6
  • 20
    • 13744252890 scopus 로고    scopus 로고
    • MAFFT version 5: improvement in accuracy of multiple sequence alignment
    • Katoh, K., Kuma, K., Toh, H., and Miyata, T. (2005) MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res 33: 511–518.
    • (2005) Nucleic Acids Res , vol.33 , pp. 511-518
    • Katoh, K.1    Kuma, K.2    Toh, H.3    Miyata, T.4
  • 22
    • 84914810569 scopus 로고    scopus 로고
    • Unique and shared responses of the gut microbiota to prolonged fasting: a comparative study across five classes of vertebrate hosts
    • Kohl, K.D., Amaya, J., Passement, C.A., Dearing, M.D., and McCue, M.D. (2014) Unique and shared responses of the gut microbiota to prolonged fasting: a comparative study across five classes of vertebrate hosts. FEMS Microbiol Ecol 90: 883–894.
    • (2014) FEMS Microbiol Ecol , vol.90 , pp. 883-894
    • Kohl, K.D.1    Amaya, J.2    Passement, C.A.3    Dearing, M.D.4    McCue, M.D.5
  • 23
    • 84961223839 scopus 로고    scopus 로고
    • Oscillospira: a central, enigmatic component of the human gut microbiota
    • Konikoff, T., and Gophna, U. (2016) Oscillospira: a central, enigmatic component of the human gut microbiota. Trends Microbiol 24: 523–524.
    • (2016) Trends Microbiol , vol.24 , pp. 523-524
    • Konikoff, T.1    Gophna, U.2
  • 24
    • 45849154166 scopus 로고    scopus 로고
    • An improved general amino acid replacement matrix
    • Le, S.Q., and Gascuel, O. (2008) An improved general amino acid replacement matrix. Mol Biol Evol 25: 1307–1320.
    • (2008) Mol Biol Evol , vol.25 , pp. 1307-1320
    • Le, S.Q.1    Gascuel, O.2
  • 25
  • 26
    • 1642277665 scopus 로고    scopus 로고
    • Restricted distribution of the butyrate kinase pathway among butyrate-producing bacteria from the human colon
    • Louis, P., Duncan, S.H., McCrae, S.I., Millar, J., Jackson, M.S., and Flint, H.J. (2004) Restricted distribution of the butyrate kinase pathway among butyrate-producing bacteria from the human colon. J Bacteriol 186: 2099–2106.
    • (2004) J Bacteriol , vol.186 , pp. 2099-2106
    • Louis, P.1    Duncan, S.H.2    McCrae, S.I.3    Millar, J.4    Jackson, M.S.5    Flint, H.J.6
  • 27
    • 84936803335 scopus 로고    scopus 로고
    • Archaea in and on the human body: health implications and future directions
    • Lurie-Weinberger, M.N., and Gophna, U. (2015) Archaea in and on the human body: health implications and future directions. PLoS Pathog 11: e1004833.
    • (2015) PLoS Pathog , vol.11
    • Lurie-Weinberger, M.N.1    Gophna, U.2
  • 28
    • 0242657434 scopus 로고    scopus 로고
    • Ecology of uncultivated Oscillospira species in the rumen of cattle, sheep, and reindeer as assessed by microscopy and molecular approaches
    • Mackie, R.I., Aminov, R.I., Hu, W., Klieve, A.V., Ouwerkerk, D., Sundset, M.A., and Kamagata, Y. (2003) Ecology of uncultivated Oscillospira species in the rumen of cattle, sheep, and reindeer as assessed by microscopy and molecular approaches. Appl Environ Microbiol 69: 6808–6815.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 6808-6815
    • Mackie, R.I.1    Aminov, R.I.2    Hu, W.3    Klieve, A.V.4    Ouwerkerk, D.5    Sundset, M.A.6    Kamagata, Y.7
  • 29
    • 75549083189 scopus 로고    scopus 로고
    • The effect of age and non-steroidal anti-inflammatory drugs on human intestinal microbiota composition
    • Makivuokko, H., Tiihonen, K., Tynkkynen, S., Paulin, L., and Rautonen, N. (2010) The effect of age and non-steroidal anti-inflammatory drugs on human intestinal microbiota composition. Br J Nutr 103: 227–234.
    • (2010) Br J Nutr , vol.103 , pp. 227-234
    • Makivuokko, H.1    Tiihonen, K.2    Tynkkynen, S.3    Paulin, L.4    Rautonen, N.5
  • 30
    • 84937642699 scopus 로고    scopus 로고
    • Is resistant starch protective against colorectal cancer via modulation of the WNT signalling pathway?
    • Malcomson, F.C., Willis, N.D., and Mathers, J.C. (2015) Is resistant starch protective against colorectal cancer via modulation of the WNT signalling pathway?. Proc Nutr Soc 74: 282–291.
    • (2015) Proc Nutr Soc , vol.74 , pp. 282-291
    • Malcomson, F.C.1    Willis, N.D.2    Mathers, J.C.3
  • 32
    • 84899528830 scopus 로고    scopus 로고
    • Population level analysis of evolved mutations underlying improvements in plant hemicellulose and cellulose fermentation by Clostridium phytofermentans
    • Mukherjee, S., Thompson, L.K., Godin, S., Schackwitz, W., Lipzen, A., Martin, J., and Blanchard, J.L. (2014) Population level analysis of evolved mutations underlying improvements in plant hemicellulose and cellulose fermentation by Clostridium phytofermentans. PLoS One 9: e86731.
    • (2014) PLoS One , vol.9
    • Mukherjee, S.1    Thompson, L.K.2    Godin, S.3    Schackwitz, W.4    Lipzen, A.5    Martin, J.6    Blanchard, J.L.7
  • 33
    • 84905730761 scopus 로고    scopus 로고
    • Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
    • Nielsen, H.B., Almeida, M., Juncker, A.S., Rasmussen, S., Li, J., Sunagawa, S., et al. (2014) Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes. Nat Biotechnol 32: 822–828.
    • (2014) Nat Biotechnol , vol.32 , pp. 822-828
    • Nielsen, H.B.1    Almeida, M.2    Juncker, A.S.3    Rasmussen, S.4    Li, J.5    Sunagawa, S.6
  • 34
    • 84891817929 scopus 로고    scopus 로고
    • LPSN–list of prokaryotic names with standing in nomenclature
    • Parte, A.C. (2014) LPSN–list of prokaryotic names with standing in nomenclature. Nucleic Acids Res 42: D613–D616.
    • (2014) Nucleic Acids Res , vol.42 , pp. D613-D616
    • Parte, A.C.1
  • 35
    • 84959453587 scopus 로고    scopus 로고
    • Relationship between microbiota of the colonic mucosa vs feces and symptoms, colonic transit, and methane production in female patients with chronic constipation
    • Parthasarathy, G., Chen, J., Chen, X., Chia, N., O'connor, H.M., Wolf, P.G., et al. (2016) Relationship between microbiota of the colonic mucosa vs feces and symptoms, colonic transit, and methane production in female patients with chronic constipation. Gastroenterology 150: 367–379 e361.
    • (2016) Gastroenterology , vol.150 , pp. 367-379
    • Parthasarathy, G.1    Chen, J.2    Chen, X.3    Chia, N.4    O'connor, H.M.5    Wolf, P.G.6
  • 36
    • 84944768817 scopus 로고    scopus 로고
    • Heparan sulfate proteoglycans: a sugar code for vertebrate development?
    • Poulain, F.E., and Yost, H.J. (2015) Heparan sulfate proteoglycans: a sugar code for vertebrate development?. Development 142: 3456–3467.
    • (2015) Development , vol.142 , pp. 3456-3467
    • Poulain, F.E.1    Yost, H.J.2
  • 37
    • 84867074831 scopus 로고    scopus 로고
    • A metagenome-wide association study of gut microbiota in type 2 diabetes
    • Qin, J., Li, Y., Cai, Z., Li, S., Zhu, J., Zhang, F., et al. (2012) A metagenome-wide association study of gut microbiota in type 2 diabetes. Nature 490: 55–60.
    • (2012) Nature , vol.490 , pp. 55-60
    • Qin, J.1    Li, Y.2    Cai, Z.3    Li, S.4    Zhu, J.5    Zhang, F.6
  • 38
    • 0035010435 scopus 로고    scopus 로고
    • ABC transporters catalyzing carbohydrate uptake
    • Schneider, E. (2001) ABC transporters catalyzing carbohydrate uptake. Res Microbiol 152: 303–310.
    • (2001) Res Microbiol , vol.152 , pp. 303-310
    • Schneider, E.1
  • 39
    • 55949124035 scopus 로고    scopus 로고
    • Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients
    • Sokol, H., Pigneur, B., Watterlot, L., Lakhdari, O., Bermudez-Humaran, L.G., Gratadoux, J.J., et al. (2008) Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients. Proc Natl Acad Sci U S A 105: 16731–16736.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 16731-16736
    • Sokol, H.1    Pigneur, B.2    Watterlot, L.3    Lakhdari, O.4    Bermudez-Humaran, L.G.5    Gratadoux, J.J.6
  • 40
    • 84897130531 scopus 로고    scopus 로고
    • Four cases of bacteremia caused by Oscillibacter ruminantium, a newly described species
    • Sydenham, T.V., Arpi, M., Klein, K., and Justesen, U.S. (2014) Four cases of bacteremia caused by Oscillibacter ruminantium, a newly described species. J Clin Microbiol 52: 1304–1307.
    • (2014) J Clin Microbiol , vol.52 , pp. 1304-1307
    • Sydenham, T.V.1    Arpi, M.2    Klein, K.3    Justesen, U.S.4
  • 41
    • 84890330527 scopus 로고    scopus 로고
    • MEGA6: molecular evolutionary genetics analysis version 6.0
    • Tamura, K., Stecher, G., Peterson, D., Filipski, A., and Kumar, S. (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30: 2725–2729.
    • (2013) Mol Biol Evol , vol.30 , pp. 2725-2729
    • Tamura, K.1    Stecher, G.2    Peterson, D.3    Filipski, A.4    Kumar, S.5
  • 43
    • 84875370244 scopus 로고    scopus 로고
    • Microbiota conservation and BMI signatures in adult monozygotic twins
    • Tims, S., Derom, C., Jonkers, D.M., Vlietinck, R., Saris, W.H., Kleerebezem, M., et al. (2013) Microbiota conservation and BMI signatures in adult monozygotic twins. Isme J 7: 707–717.
    • (2013) Isme J , vol.7 , pp. 707-717
    • Tims, S.1    Derom, C.2    Jonkers, D.M.3    Vlietinck, R.4    Saris, W.H.5    Kleerebezem, M.6
  • 44
    • 84862681683 scopus 로고    scopus 로고
    • Microbial heparin/heparan sulphate lyases: potential and applications
    • Tripathi, C.K., Banga, J., and Mishra, V. (2012) Microbial heparin/heparan sulphate lyases: potential and applications. Appl Microbiol Biotechnol 94: 307–321.
    • (2012) Appl Microbiol Biotechnol , vol.94 , pp. 307-321
    • Tripathi, C.K.1    Banga, J.2    Mishra, V.3
  • 45
    • 77049174419 scopus 로고
    • The nuclear structures of Oscillospira guilliermondi Chatton and Perard
    • Tuffery, A.A. (1954) The nuclear structures of Oscillospira guilliermondi Chatton and Perard. J Gen Microbiol 10: 342–344.
    • (1954) J Gen Microbiol , vol.10 , pp. 342-344
    • Tuffery, A.A.1
  • 46
    • 84952942226 scopus 로고    scopus 로고
    • Stool consistency is strongly associated with gut microbiota richness and composition, enterotypes and bacterial growth rates
    • Vandeputte, D., Falony, G., Vieira-Silva, S., Tito, R.Y., Joossens, M., and Raes, J. (2016) Stool consistency is strongly associated with gut microbiota richness and composition, enterotypes and bacterial growth rates. Gut 65: 57–62.
    • (2016) Gut , vol.65 , pp. 57-62
    • Vandeputte, D.1    Falony, G.2    Vieira-Silva, S.3    Tito, R.Y.4    Joossens, M.5    Raes, J.6
  • 47
    • 76749155783 scopus 로고    scopus 로고
    • The systemic imprint of growth and its uses in ecological (meta)genomics
    • Vieira-Silva, S., and Rocha, E.P. (2010) The systemic imprint of growth and its uses in ecological (meta)genomics. PLoS Genet 6: e1000808.
    • (2010) PLoS Genet , vol.6
    • Vieira-Silva, S.1    Rocha, E.P.2
  • 48
    • 84896401262 scopus 로고    scopus 로고
    • Impact of oral vancomycin on gut microbiota, bile acid metabolism, and insulin sensitivity
    • Vrieze, A., Out, C., Fuentes, S., Jonker, L., Reuling, I., Kootte, R.S., et al. (2014) Impact of oral vancomycin on gut microbiota, bile acid metabolism, and insulin sensitivity. J Hepatol 60: 824–831.
    • (2014) J Hepatol , vol.60 , pp. 824-831
    • Vrieze, A.1    Out, C.2    Fuentes, S.3    Jonker, L.4    Reuling, I.5    Kootte, R.S.6
  • 49
    • 78751580602 scopus 로고    scopus 로고
    • Dominant and diet-responsive groups of bacteria within the human colonic microbiota
    • Walker, A.W., Ince, J., Duncan, S.H., Webster, L.M., Holtrop, G., Ze, X., et al. (2011) Dominant and diet-responsive groups of bacteria within the human colonic microbiota. Isme J 5: 220–230.
    • (2011) Isme J , vol.5 , pp. 220-230
    • Walker, A.W.1    Ince, J.2    Duncan, S.H.3    Webster, L.M.4    Holtrop, G.5    Ze, X.6
  • 50
    • 84908348194 scopus 로고    scopus 로고
    • Meta-analyses of human gut microbes associated with obesity and IBD
    • Walters, W.A., Xu, Z., and Knight, R. (2014) Meta-analyses of human gut microbes associated with obesity and IBD. FEBS Lett 588: 4223–4233.
    • (2014) FEBS Lett , vol.588 , pp. 4223-4233
    • Walters, W.A.1    Xu, Z.2    Knight, R.3
  • 51
    • 0141837147 scopus 로고    scopus 로고
    • Flow cytometric sorting, phylogenetic analysis and in situ detection of Oscillospira guillermondii, a large, morphologically conspicuous but uncultured ruminal bacterium
    • Yanagita, K., Manome, A., Meng, X.Y., Hanada, S., Kanagawa, T., Tsuchida, T., et al. (2003) Flow cytometric sorting, phylogenetic analysis and in situ detection of Oscillospira guillermondii, a large, morphologically conspicuous but uncultured ruminal bacterium. Int J Syst Evol Microbiol 53: 1609–1614.
    • (2003) Int J Syst Evol Microbiol , vol.53 , pp. 1609-1614
    • Yanagita, K.1    Manome, A.2    Meng, X.Y.3    Hanada, S.4    Kanagawa, T.5    Tsuchida, T.6
  • 53
    • 84873296091 scopus 로고    scopus 로고
    • Characterization of gut microbiomes in nonalcoholic steatohepatitis (NASH) patients: a connection between endogenous alcohol and NASH
    • Zhu, L., Baker, S.S., Gill, C., Liu, W., Alkhouri, R., Baker, R.D., and Gill, S.R. (2013) Characterization of gut microbiomes in nonalcoholic steatohepatitis (NASH) patients: a connection between endogenous alcohol and NASH. Hepatology 57: 601–609.
    • (2013) Hepatology , vol.57 , pp. 601-609
    • Zhu, L.1    Baker, S.S.2    Gill, C.3    Liu, W.4    Alkhouri, R.5    Baker, R.D.6    Gill, S.R.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.