메뉴 건너뛰기




Volumn 72, Issue 1, 2017, Pages 40-47

Genomic analysis of 495 vancomycin-resistant Enterococcus faecium reveals broad dissemination of a vanA plasmid in more than 19 clones from Copenhagen, Denmark

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL COLONIZATION; BACTERIUM ISOLATE; CLONE; DENMARK; ENTEROCOCCUS FAECIUM; GENE SEQUENCE; GENETIC EPIDEMIOLOGY; GENOME ANALYSIS; HORIZONTAL GENE TRANSFER; HOSPITAL; HUMAN; NONHUMAN; PHYLOGENY; PLASMID; TRANSPOSON; VANA GENE; VANCOMYCIN RESISTANT ENTEROCOCCUS; VANCOMYCIN RESISTANT ENTEROCOCCUS FAECIUM; WARD; ADOLESCENT; ADULT; AGED; ANALYSIS; CHILD; CLASSIFICATION; DNA SEQUENCE; FEMALE; GENETIC VARIATION; GENETICS; GENOTYPE; GRAM-POSITIVE BACTERIAL INFECTIONS; ISOLATION AND PURIFICATION; MALE; MICROBIOLOGY; MIDDLE AGED; MOLECULAR EPIDEMIOLOGY; MOLECULAR TYPING; PRESCHOOL CHILD; VERY ELDERLY; YOUNG ADULT;

EID: 85014570977     PISSN: 03057453     EISSN: 14602091     Source Type: Journal    
DOI: 10.1093/jac/dkw360     Document Type: Article
Times cited : (35)

References (48)
  • 1
    • 84865798417 scopus 로고    scopus 로고
    • Restricted gene flow among hospital subpopulations of Enterococcus faecium
    • Willems RJ, Top J, van Schaik Wet al. Restricted gene flow among hospital subpopulations of Enterococcus faecium. MBio 2012; 3: e00151-12.
    • (2012) MBio , vol.3
    • Willems, R.J.1    Top, J.2    van Schaik, W.3
  • 2
    • 84856239875 scopus 로고    scopus 로고
    • Genomic and SNP analyses demonstrate a distant separation of the hospital and communityassociated clades of Enterococcus faecium
    • Galloway-Pena J, Roh JH, Latorre M et al. Genomic and SNP analyses demonstrate a distant separation of the hospital and communityassociated clades of Enterococcus faecium. PLoS One 2012; 7: e30187.
    • (2012) PLoS One , vol.7
    • Galloway-Pena, J.1    Roh, J.H.2    Latorre, M.3
  • 3
    • 33748681343 scopus 로고    scopus 로고
    • How long do nosocomial pathogens persist on inanimate surfaces?. A systematic review
    • Kramer A, Schwebke I, Kampf G. How long do nosocomial pathogens persist on inanimate surfaces? A systematic review. BMC Infect Dis 2006; 6: 130.
    • (2006) BMC Infect Dis , vol.6 , pp. 130
    • Kramer, A.1    Schwebke, I.2    Kampf, G.3
  • 4
    • 84940438219 scopus 로고    scopus 로고
    • Environmental survival of vancomycin-sensitive ampicillin-resistant Enterococcus faecium (AREfm)
    • Wagenvoort JH, De Brauwer EI, Penders RJ et al. Environmental survival of vancomycin-sensitive ampicillin-resistant Enterococcus faecium (AREfm). Eur J Clin Microbiol Infect Dis 2015; 34: 1901-3.
    • (2015) Eur J Clin Microbiol Infect Dis , vol.34 , pp. 1901-1903
    • Wagenvoort, J.H.1    De Brauwer, E.I.2    Penders, R.J.3
  • 7
    • 58949092977 scopus 로고    scopus 로고
    • Emergence and spread of vancomycin resistance among enterococci in Europe
    • Werner G, Coque TM, Hammerum AM et al. Emergence and spread of vancomycin resistance among enterococci in Europe. Euro Surveill 2008; 13: pii=19046.
    • (2008) Euro Surveill , vol.13
    • Werner, G.1    Coque, T.M.2    Hammerum, A.M.3
  • 8
    • 0027391961 scopus 로고
    • Characterization of Tn1546, a Tn3-related transposon conferring glycopeptide resistance by synthesis of depsipeptide peptidoglycan precursors in Enterococcus faecium BM4147
    • Arthur M, Molinas C, Depardieu F et al. Characterization of Tn1546, a Tn3-related transposon conferring glycopeptide resistance by synthesis of depsipeptide peptidoglycan precursors in Enterococcus faecium BM4147. J Bacteriol 1993; 175: 117-27.
    • (1993) J Bacteriol , vol.175 , pp. 117-127
    • Arthur, M.1    Molinas, C.2    Depardieu, F.3
  • 9
    • 84920151494 scopus 로고    scopus 로고
    • National surveillance on vancomycinresistant Enterococcus faecium in Taiwan: emergence and widespread of ST414 and a Tn1546-like element with simultaneous insertion of IS1251-like and IS1678
    • Kuo AJ, Su LH, Shu JC et al. National surveillance on vancomycinresistant Enterococcus faecium in Taiwan: emergence and widespread of ST414 and a Tn1546-like element with simultaneous insertion of IS1251-like and IS1678. PLoS One 2014; 9: e115555.
    • (2014) PLoS One , vol.9
    • Kuo, A.J.1    Su, L.H.2    Shu, J.C.3
  • 10
    • 84867642645 scopus 로고    scopus 로고
    • Genetic features and molecular epidemiology of Enterococcus faecium isolated in two university hospitals in Brazil
    • da Silva LP, Pitondo-Silva A, Martinez R et al. Genetic features and molecular epidemiology of Enterococcus faecium isolated in two university hospitals in Brazil. Diagn Microbiol Infect Dis 2012; 74: 267-71.
    • (2012) Diagn Microbiol Infect Dis , vol.74 , pp. 267-271
    • da Silva, L.P.1    Pitondo-Silva, A.2    Martinez, R.3
  • 11
    • 84903648276 scopus 로고    scopus 로고
    • Molecular analysis of VanA outbreak of Enterococcus faeciumin twoWarsawhospitals: the importance of mobile genetic elements
    • 2014
    • Wardal E, Markowska K, Zabicka D et al. Molecular analysis of VanA outbreak of Enterococcus faeciumin twoWarsawhospitals: the importance of mobile genetic elements. Biomed Res Int 2014; 2014: 575367.
    • (2014) Biomed Res Int
    • Wardal, E.1    Markowska, K.2    Zabicka, D.3
  • 12
    • 0032978544 scopus 로고    scopus 로고
    • Molecular diversity and evolutionary relationships of Tn1546-like elements in enterococci from humans and animals
    • Willems RJ, Top J, van den Braak N et al. Molecular diversity and evolutionary relationships of Tn1546-like elements in enterococci from humans and animals. Antimicrob Agents Chemother 1999; 43: 483-91.
    • (1999) Antimicrob Agents Chemother , vol.43 , pp. 483-491
    • Willems, R.J.1    Top, J.2    van den Braak, N.3
  • 13
    • 40549086574 scopus 로고    scopus 로고
    • Diversity of Tn1546 and its role in the dissemination of vancomycin-resistant enterococci in Portugal
    • Novais C, Freitas AR, Sousa JC et al. Diversity of Tn1546 and its role in the dissemination of vancomycin-resistant enterococci in Portugal. Antimicrob Agents Chemother 2008; 52: 1001-8.
    • (2008) Antimicrob Agents Chemother , vol.52 , pp. 1001-1008
    • Novais, C.1    Freitas, A.R.2    Sousa, J.C.3
  • 14
    • 84947807215 scopus 로고    scopus 로고
    • Multiple hospital outbreaks of vanA Enterococcus faecium in Denmark, 2012-13, investigated by WGS, MLST and PFGE
    • Pinholt M, Larner-Svensson H, Littauer P et al. Multiple hospital outbreaks of vanA Enterococcus faecium in Denmark, 2012-13, investigated by WGS, MLST and PFGE. J Antimicrob Chemother 2015; 70: 2474-82.
    • (2015) J Antimicrob Chemother , vol.70 , pp. 2474-2482
    • Pinholt, M.1    Larner-Svensson, H.2    Littauer, P.3
  • 15
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: algorithms for de novo short read assembly using de Bruijn graphs
    • Zerbino DR, Birney E. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 2008; 18: 821-9.
    • (2008) Genome Res , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2
  • 16
    • 84901417347 scopus 로고    scopus 로고
    • Prokka: rapid prokaryotic genome annotation
    • Seemann T. Prokka: rapid prokaryotic genome annotation. Bioinformatics 2014; 30: 2068-9.
    • (2014) Bioinformatics , vol.30 , pp. 2068-2069
    • Seemann, T.1
  • 17
    • 84947793096 scopus 로고    scopus 로고
    • Roary: rapid large-scale prokaryote pan genome analysis
    • Page AJ, Cummins CA, Hunt M et al. Roary: rapid large-scale prokaryote pan genome analysis. Bioinformatics 2015; 31: 3691-3.
    • (2015) Bioinformatics , vol.31 , pp. 3691-3693
    • Page, A.J.1    Cummins, C.A.2    Hunt, M.3
  • 20
    • 84861203966 scopus 로고    scopus 로고
    • Comparative analysis of the first complete Enterococcus faecium genome
    • Lam MM, Seemann T, Bulach DM et al. Comparative analysis of the first complete Enterococcus faecium genome. J Bacteriol 2012; 194: 2334-41.
    • (2012) J Bacteriol , vol.194 , pp. 2334-2341
    • Lam, M.M.1    Seemann, T.2    Bulach, D.M.3
  • 21
    • 79956307251 scopus 로고    scopus 로고
    • Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads
    • Lunter G, Goodson M. Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads. Genome Res 2011; 21: 936-9.
    • (2011) Genome Res , vol.21 , pp. 936-939
    • Lunter, G.1    Goodson, M.2
  • 22
    • 84871366407 scopus 로고    scopus 로고
    • Microevolutionary analysis of Clostridium difficile genomes to investigate transmission
    • Didelot X, Eyre DW, Cule M et al. Microevolutionary analysis of Clostridium difficile genomes to investigate transmission. Genome Biol 2012; 13: R118.
    • (2012) Genome Biol , vol.13 , pp. R118
    • Didelot, X.1    Eyre, D.W.2    Cule, M.3
  • 23
    • 40549120596 scopus 로고    scopus 로고
    • The RAST Server: Rapid Annotations using Subsystems Technology
    • Aziz RK, Bartels D, Best AA et al. The RAST Server: Rapid Annotations using Subsystems Technology. BMC Genomics 2008; 9: 75.
    • (2008) BMC Genomics , vol.9 , pp. 75
    • Aziz, R.K.1    Bartels, D.2    Best, A.A.3
  • 24
    • 84891804612 scopus 로고    scopus 로고
    • The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
    • Overbeek R, Olson R, Pusch GD et al. The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST). Nucleic Acids Res 2014; 42: D206-14.
    • (2014) Nucleic Acids Res , vol.42 , pp. D206-D214
    • Overbeek, R.1    Olson, R.2    Pusch, G.D.3
  • 25
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • Langmead B, Salzberg SL. Fast gapped-read alignment with Bowtie 2. Nat Methods 2012; 9: 357-9.
    • (2012) Nat Methods , vol.9 , pp. 357-359
    • Langmead, B.1    Salzberg, S.L.2
  • 26
    • 2942538300 scopus 로고    scopus 로고
    • Versatile and open software for comparing large genomes
    • Kurtz S, Phillippy A, Delcher AL et al. Versatile and open software for comparing large genomes. Genome Biol 2004; 5: R12.
    • (2004) Genome Biol , vol.5 , pp. R12
    • Kurtz, S.1    Phillippy, A.2    Delcher, A.L.3
  • 27
    • 68549104404 scopus 로고    scopus 로고
    • The Sequence Alignment/Map format and SAMtools
    • Li H, Handsaker B, Wysoker A et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics 2009; 25: 2078-9.
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1    Handsaker, B.2    Wysoker, A.3
  • 28
    • 85014558439 scopus 로고    scopus 로고
    • Pysam. https://github.com/pysam-developers/pysam.
  • 30
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 2004; 32: 1792-7.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 31
    • 84860771820 scopus 로고    scopus 로고
    • SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing
    • Bankevich A, Nurk S, Antipov D et al. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol 2012; 19: 455-77.
    • (2012) J Comput Biol , vol.19 , pp. 455-477
    • Bankevich, A.1    Nurk, S.2    Antipov, D.3
  • 32
    • 84903160552 scopus 로고    scopus 로고
    • In silico detection and typing of plasmids using PlasmidFinder and plasmid multilocus sequence typing
    • Carattoli A, Zankari E, Garcia-Fernandez A et al. In silico detection and typing of plasmids using PlasmidFinder and plasmid multilocus sequence typing. Antimicrob Agents Chemother 2014; 58: 3895-903.
    • (2014) Antimicrob Agents Chemother , vol.58 , pp. 3895-3903
    • Carattoli, A.1    Zankari, E.2    Garcia-Fernandez, A.3
  • 33
    • 84867587461 scopus 로고    scopus 로고
    • Identification of acquired antimicrobial resistance genes
    • Zankari E, Hasman H, Cosentino S et al. Identification of acquired antimicrobial resistance genes. J Antimicrob Chemother 2012; 67: 2640-4.
    • (2012) J Antimicrob Chemother , vol.67 , pp. 2640-2644
    • Zankari, E.1    Hasman, H.2    Cosentino, S.3
  • 34
    • 77951770756 scopus 로고    scopus 로고
    • BEDTools: a flexible suite of utilities for comparing genomic features
    • Quinlan AR, Hall IM. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 2010; 26: 841-2.
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 35
    • 79951469344 scopus 로고    scopus 로고
    • Txe, an endoribonuclease of the enterococcal Axe-Txe toxin-antitoxin system, cleaves mRNA and inhibits protein synthesis
    • Halvorsen EM, Williams JJ, Bhimani AJ et al. Txe, an endoribonuclease of the enterococcal Axe-Txe toxin-antitoxin system, cleaves mRNA and inhibits protein synthesis. Microbiology 2011; 157: 387-97.
    • (2011) Microbiology , vol.157 , pp. 387-397
    • Halvorsen, E.M.1    Williams, J.J.2    Bhimani, A.J.3
  • 36
    • 77955105620 scopus 로고    scopus 로고
    • Alarming spread of vancomycin resistant enterococci in Sweden since 2007
    • Soderblom T, Aspevall O, ErntellMet al. Alarming spread of vancomycin resistant enterococci in Sweden since 2007. Euro Surveill 2010; 15: pii=19620.
    • (2010) Euro Surveill , vol.15
    • Soderblom, T.1    Aspevall, O.2    Erntell, M.3
  • 37
    • 0032723039 scopus 로고    scopus 로고
    • vanA and vanB incorporate into an endemic ampicillin-resistant vancomycin-sensitive Enterococcus faecium strain: effect on interpretation of clonality
    • Suppola JP, Kolho E, Salmenlinna S et al. vanA and vanB incorporate into an endemic ampicillin-resistant vancomycin-sensitive Enterococcus faecium strain: effect on interpretation of clonality. J Clin Microbiol 1999; 37: 3934-9.
    • (1999) J Clin Microbiol , vol.37 , pp. 3934-3939
    • Suppola, J.P.1    Kolho, E.2    Salmenlinna, S.3
  • 38
    • 84943792123 scopus 로고    scopus 로고
    • Epidemiology and molecular typing of VRE bloodstream isolates in an Irish tertiary care hospital
    • Ryan L, O'Mahony E, Wrenn C et al. Epidemiology and molecular typing of VRE bloodstream isolates in an Irish tertiary care hospital. J Antimicrob Chemother 2015; 70: 2718-24.
    • (2015) J Antimicrob Chemother , vol.70 , pp. 2718-2724
    • Ryan, L.1    O'Mahony, E.2    Wrenn, C.3
  • 39
    • 84883343175 scopus 로고    scopus 로고
    • Genomic insights to control the emergence of vancomycin-resistant enterococci
    • Howden BP, Holt KE, Lam MM et al. Genomic insights to control the emergence of vancomycin-resistant enterococci. MBio 2013; 4: e00412-13.
    • (2013) MBio , vol.4
    • Howden, B.P.1    Holt, K.E.2    Lam, M.M.3
  • 40
    • 84929479074 scopus 로고    scopus 로고
    • A multicentre hospital outbreak in Sweden caused by introduction of a vanB2 transposon into a stably maintained pRUM-plasmid in an Enterococcus faecium ST192 clone
    • Sivertsen A, Billstrom H, Melefors O et al. A multicentre hospital outbreak in Sweden caused by introduction of a vanB2 transposon into a stably maintained pRUM-plasmid in an Enterococcus faecium ST192 clone. PLoS One 2014; 9: e103274.
    • (2014) PLoS One , vol.9
    • Sivertsen, A.1    Billstrom, H.2    Melefors, O.3
  • 41
    • 84954404764 scopus 로고    scopus 로고
    • Whole-genome sequencing reveals transmission of vancomycin-resistant Enterococcus faecium in a healthcare network
    • Brodrick HJ, Raven KE, Harrison EM et al. Whole-genome sequencing reveals transmission of vancomycin-resistant Enterococcus faecium in a healthcare network. Genome Med 2016; 8: 4.
    • (2016) Genome Med , vol.8 , pp. 4
    • Brodrick, H.J.1    Raven, K.E.2    Harrison, E.M.3
  • 42
    • 77953951032 scopus 로고    scopus 로고
    • High prevalence of ST-78 infection-associated vancomycin-resistant Enterococcus faecium from hospitals in Asuncion, Paraguay
    • Khan MA, Northwood JB, Loor RG et al. High prevalence of ST-78 infection-associated vancomycin-resistant Enterococcus faecium from hospitals in Asuncion, Paraguay. Clin Microbiol Infect 2010; 16: 624-7.
    • (2010) Clin Microbiol Infect , vol.16 , pp. 624-627
    • Khan, M.A.1    Northwood, J.B.2    Loor, R.G.3
  • 43
    • 33846064688 scopus 로고    scopus 로고
    • Toxin-antitoxin systems are ubiquitous and plasmid-encoded in vancomycin-resistant enterococci
    • Moritz EM, Hergenrother PJ. Toxin-antitoxin systems are ubiquitous and plasmid-encoded in vancomycin-resistant enterococci. Proc Natl Acad Sci USA 2007; 104: 311-6.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 311-316
    • Moritz, E.M.1    Hergenrother, P.J.2
  • 44
    • 76349105479 scopus 로고    scopus 로고
    • PCR-based plasmid typing in Enterococcus faecium strains reveals widely distributed pRE25-, pRUM-, pIP501-and pHTb-related replicons associated with glycopeptide resistance and stabilizing toxin-antitoxin systems
    • Rosvoll TC, Pedersen T, Sletvold H et al. PCR-based plasmid typing in Enterococcus faecium strains reveals widely distributed pRE25-, pRUM-, pIP501-and pHTb-related replicons associated with glycopeptide resistance and stabilizing toxin-antitoxin systems. FEMS Immunol Med Microbiol 2010; 58: 254-68.
    • (2010) FEMS Immunol Med Microbiol , vol.58 , pp. 254-268
    • Rosvoll, T.C.1    Pedersen, T.2    Sletvold, H.3
  • 45
    • 84859620890 scopus 로고    scopus 로고
    • Novel vancomycin-resistance transposon, plasmid replicon types, and virulence factors of vancomycinresistant enterococci in Zhejiang, China
    • Qu TT, Yang Q, Shen P et al. Novel vancomycin-resistance transposon, plasmid replicon types, and virulence factors of vancomycinresistant enterococci in Zhejiang, China. Microb Drug Resist 2012; 18: 183-8.
    • (2012) Microb Drug Resist , vol.18 , pp. 183-188
    • Qu, T.T.1    Yang, Q.2    Shen, P.3
  • 48
    • 84977267506 scopus 로고    scopus 로고
    • A silenced vanA gene cluster on a transferable plasmid caused an outbreak of vancomycin-variable enterococci
    • Sivertsen A, Pedersen T, Larssen KWet al. A silenced vanA gene cluster on a transferable plasmid caused an outbreak of vancomycin-variable enterococci. Antimicrob Agents Chemother 2016; 60: 4119-27.
    • (2016) Antimicrob Agents Chemother , vol.60 , pp. 4119-4127
    • Sivertsen, A.1    Pedersen, T.2    Larssen, K.W.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.