-
1
-
-
69249089272
-
Neuroproteomics: Understanding the molecular organization and complexity of the brain
-
Bayés, A., Grant, S. G. N. Neuroproteomics: understanding the molecular organization and complexity of the brain. Nat. Rev. Neurosci. 10, 635-646 (2009).
-
(2009)
Nat. Rev. Neurosci.
, vol.10
, pp. 635-646
-
-
Bayés, A.1
Grant, S.G.N.2
-
2
-
-
84871712720
-
Synaptic scaffold evolution generated components of vertebrate cognitive complexity
-
Nithianantharajah, J., et al. Synaptic scaffold evolution generated components of vertebrate cognitive complexity. Nat. Neurosci. 16, 16-24 (2013).
-
(2013)
Nat. Neurosci.
, vol.16
, pp. 16-24
-
-
Nithianantharajah, J.1
-
3
-
-
84871720366
-
Evolution of GluN2A/B cytoplasmic domains diversified vertebrate synaptic plasticity and behavior
-
Ryan, T. J., et al. Evolution of GluN2A/B cytoplasmic domains diversified vertebrate synaptic plasticity and behavior. Nat. Neurosci. 16, 25-32 (2013).
-
(2013)
Nat. Neurosci.
, vol.16
, pp. 25-32
-
-
Ryan, T.J.1
-
4
-
-
84957876278
-
Proteomics of the synapse-a quantitative approach to neuronal plasticity
-
Dieterich, D. C., Kreutz, M. R. Proteomics of the synapse-a quantitative approach to neuronal plasticity. Mol. Cell Proteomics 15, 368-381 (2015).
-
(2015)
Mol. Cell Proteomics
, vol.15
, pp. 368-381
-
-
Dieterich, D.C.1
Kreutz, M.R.2
-
5
-
-
78650680152
-
Characterization of the proteome, diseases and evolution of the human postsynaptic density
-
Bayés, A., et al. Characterization of the proteome, diseases and evolution of the human postsynaptic density. Nat. Neurosci. 14, 19-21 (2011).
-
(2011)
Nat. Neurosci.
, vol.14
, pp. 19-21
-
-
Bayés, A.1
-
6
-
-
84955477826
-
Human post-mortem synapse proteome integrity screening for proteomic studies of postsynaptic complexes
-
Bayés, A., et al. Human post-mortem synapse proteome integrity screening for proteomic studies of postsynaptic complexes. Mol. Brain 7, 88 (2014).
-
(2014)
Mol. Brain
, vol.7
, pp. 88
-
-
Bayés, A.1
-
7
-
-
77953275175
-
Synaptopathy: Dysfunction of synaptic function
-
Brose, N., O'Connor, V., Skehel, P. Synaptopathy: dysfunction of synaptic function. Biochem. Soc. Trans. 38, 443-444 (2010).
-
(2010)
Biochem. Soc. Trans.
, vol.38
, pp. 443-444
-
-
Brose, N.1
O'Connor, V.2
Skehel, P.3
-
8
-
-
84863434758
-
Synaptopathies: Diseases of the synaptome
-
Grant, S. G. Synaptopathies: diseases of the synaptome. Curr. Opin. Neurobiol. 22, 522-529 (2012).
-
(2012)
Curr. Opin. Neurobiol.
, vol.22
, pp. 522-529
-
-
Grant, S.G.1
-
9
-
-
27744545297
-
Synapse proteomics of multiprotein complexes: En route from genes to nervous system diseases
-
Grant, S. G., Marshall, M. C., Page, K. L., Cumiskey, M. A., Armstrong, J. D. Synapse proteomics of multiprotein complexes: en route from genes to nervous system diseases. Hum. Mol. Genet 14, R225-R234 (2005).
-
(2005)
Hum. Mol. Genet
, vol.14
, pp. R225-R234
-
-
Grant, S.G.1
Marshall, M.C.2
Page, K.L.3
Cumiskey, M.A.4
Armstrong, J.D.5
-
10
-
-
84856225986
-
De novo CNV analysis implicates specific abnormalities of postsynaptic signalling complexes in the pathogenesis of schizophrenia
-
Kirov, G., et al. De novo CNV analysis implicates specific abnormalities of postsynaptic signalling complexes in the pathogenesis of schizophrenia. Mol. Psychiatry 17, 142-153 (2011).
-
(2011)
Mol. Psychiatry
, vol.17
, pp. 142-153
-
-
Kirov, G.1
-
11
-
-
84862642971
-
Evolution of synapse complexity and diversity
-
Emes, R. D., Grant, S. G. N. Evolution of synapse complexity and diversity. Annu. Rev. Neurosci. 35, 111-131 (2012).
-
(2012)
Annu. Rev. Neurosci.
, vol.35
, pp. 111-131
-
-
Emes, R.D.1
Grant, S.G.N.2
-
12
-
-
34648816680
-
The 2R hypothesis: An update
-
Kasahara, M. The 2R hypothesis: an update. Curr. Opin. Immunol. 19, 547-552 (2007).
-
(2007)
Curr. Opin. Immunol.
, vol.19
, pp. 547-552
-
-
Kasahara, M.1
-
13
-
-
0036846746
-
The origin and evolution of model organisms
-
Hedges, S. B. The origin and evolution of model organisms. Nat. Rev. 3, 838-849 (2002).
-
(2002)
Nat. Rev.
, vol.3
, pp. 838-849
-
-
Hedges, S.B.1
-
14
-
-
84876798186
-
The zebrafish reference genome sequence and its relationship to the human genome
-
Howe, K., et al. The zebrafish reference genome sequence and its relationship to the human genome. Nature 496, 498-503 (2013).
-
(2013)
Nature
, vol.496
, pp. 498-503
-
-
Howe, K.1
-
15
-
-
79961143031
-
Modeling neurodegeneration in zebrafish
-
Xi, Y., Noble, S., Ekker, M. Modeling neurodegeneration in zebrafish. Curr. Neurol. Neurosci. Rep. 11, 274-282 (2011).
-
(2011)
Curr. Neurol. Neurosci. Rep.
, vol.11
, pp. 274-282
-
-
Xi, Y.1
Noble, S.2
Ekker, M.3
-
16
-
-
84895076713
-
Zebrafish as an emerging model for studying complex brain disorders
-
Kalueff, A. V., Stewart, A. M., Gerlai, R. Zebrafish as an emerging model for studying complex brain disorders. Trends Pharmacol. Sci. 35, 63-75 (2014).
-
(2014)
Trends Pharmacol. Sci.
, vol.35
, pp. 63-75
-
-
Kalueff, A.V.1
Stewart, A.M.2
Gerlai, R.3
-
17
-
-
84908351502
-
Molecular psychiatry of zebrafish
-
Stewart, A. M., et al. Molecular psychiatry of zebrafish. Mol. Psychiatry 20, 2-17 (2015).
-
(2015)
Mol. Psychiatry
, vol.20
, pp. 2-17
-
-
Stewart, A.M.1
-
18
-
-
0015987130
-
The optic tectum of a perciform teleost. II. Fine structure
-
Laufer, M., Vanegas, H. The optic tectum of a perciform teleost. II. Fine structure. J. Comp. Neurol. 154, 61-95 (1974).
-
(1974)
J. Comp. Neurol.
, vol.154
, pp. 61-95
-
-
Laufer, M.1
Vanegas, H.2
-
19
-
-
0018888130
-
An ultrastructural study of the normal synaptic organization of the optic tectum and the degenerating tectal afferents from retina, telencephalon, and contralateral tectum in a teleost, Holocentrus rufus
-
Ito, H., Butler, A. B., Ebbesson, S. O. An ultrastructural study of the normal synaptic organization of the optic tectum and the degenerating tectal afferents from retina, telencephalon, and contralateral tectum in a teleost, Holocentrus rufus. J. Comp. Neurol. 191, 639-659 (1980).
-
(1980)
J. Comp. Neurol.
, vol.191
, pp. 639-659
-
-
Ito, H.1
Butler, A.B.2
Ebbesson, S.O.3
-
20
-
-
0020631974
-
Golgi electron-microscopic and combined Golgi-electron-microscopic studies of the mitral cells in the goldfish olfactory bulb
-
Oka, Y. Golgi, electron-microscopic and combined Golgi-electron-microscopic studies of the mitral cells in the goldfish olfactory bulb. Neuroscience 8, 723-742 (1983).
-
(1983)
Neuroscience
, vol.8
, pp. 723-742
-
-
Oka, Y.1
-
21
-
-
0017079883
-
Fine structure of the olfactory bulb in the goldfish Carassius auratus
-
Ichikawa, M. Fine structure of the olfactory bulb in the goldfish, Carassius auratus. Brain Res. 115, 43-46 (1976).
-
(1976)
Brain Res.
, vol.115
, pp. 43-46
-
-
Ichikawa, M.1
-
22
-
-
0025811495
-
Palisade pattern of mormyrid Purkinje cells: A correlated light and electron microscopic study
-
Meek, J., Nieuwenhuys, R. Palisade pattern of mormyrid Purkinje cells: a correlated light and electron microscopic study. J. Comp. Neurol. 306, 156-192 (1991).
-
(1991)
J. Comp. Neurol.
, vol.306
, pp. 156-192
-
-
Meek, J.1
Nieuwenhuys, R.2
-
23
-
-
34548601953
-
Synaptic integration of adult-generated olfactory bulb granule cells: Basal axodendritic centrifugal input precedes apical dendrodendritic local circuits
-
Whitman, M. C., Greer, C. A. Synaptic integration of adult-generated olfactory bulb granule cells: basal axodendritic centrifugal input precedes apical dendrodendritic local circuits. J. Neurosci. 27, 9951-9961 (2007).
-
(2007)
J. Neurosci.
, vol.27
, pp. 9951-9961
-
-
Whitman, M.C.1
Greer, C.A.2
-
24
-
-
0024203547
-
Dendritic spines of rat cerebellar Purkinje cells: Serial electron microscopy with reference to their biophysical characteristics
-
Harris, K. M., Stevens, J. K. Dendritic spines of rat cerebellar Purkinje cells: serial electron microscopy with reference to their biophysical characteristics. J. Neurosci. 8, 4455-4469 (1988).
-
(1988)
J. Neurosci.
, vol.8
, pp. 4455-4469
-
-
Harris, K.M.1
Stevens, J.K.2
-
25
-
-
84960192727
-
The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons
-
Braasch, I., et al. The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons. Nat. Genet. 48, 427-437 (2016).
-
(2016)
Nat. Genet.
, vol.48
, pp. 427-437
-
-
Braasch, I.1
-
26
-
-
32344447939
-
Characterization of the mouse brain proteome using global proteomic analysis complemented with cysteinyl-peptide enrichment
-
Wang, H., et al. Characterization of the mouse brain proteome using global proteomic analysis complemented with cysteinyl-peptide enrichment. J. Proteome Res. 5, 361-369 (2006).
-
(2006)
J. Proteome Res.
, vol.5
, pp. 361-369
-
-
Wang, H.1
-
27
-
-
84901599553
-
A draft map of the human proteome
-
Kim, M.-S., et al. A draft map of the human proteome. Nature 509, 575-581 (2014).
-
(2014)
Nature
, vol.509
, pp. 575-581
-
-
Kim, M.-S.1
-
28
-
-
84910647485
-
Annotation of the zebrafish genome through an integrated transcriptomic and proteomic analysis
-
Kelkar, D. S., et al. Annotation of the zebrafish genome through an integrated transcriptomic and proteomic analysis. Mol. Cell Proteomics 13, 3184-3198 (2014).
-
(2014)
Mol. Cell Proteomics
, vol.13
, pp. 3184-3198
-
-
Kelkar, D.S.1
-
29
-
-
84898719148
-
Global protein expression profiling of zebrafish organs based on in vivo incorporation of stable isotopes
-
Nolte, H., et al. Global protein expression profiling of zebrafish organs based on in vivo incorporation of stable isotopes. J. Proteome Res. 13, 2162-2174 (2014).
-
(2014)
J. Proteome Res.
, vol.13
, pp. 2162-2174
-
-
Nolte, H.1
-
30
-
-
84993978491
-
SNAP-25, a known presynaptic protein with emerging postsynaptic functions
-
Antonucci, F., et al. SNAP-25, a known presynaptic protein with emerging postsynaptic functions. Front Synaptic Neurosci. 8, 7 (2016).
-
(2016)
Front Synaptic Neurosci.
, vol.8
, pp. 7
-
-
Antonucci, F.1
-
31
-
-
84949437948
-
Postsynaptic VAMP/synaptobrevin facilitates differential vesicle trafficking of GluA1 and GluA2 AMPA receptor subunits
-
Hussain, S., Davanger, S. Postsynaptic VAMP/synaptobrevin facilitates differential vesicle trafficking of GluA1 and GluA2 AMPA receptor subunits. PLoS ONE 10, e0140868 (2015).
-
(2015)
PLoS ONE
, vol.10
, pp. e0140868
-
-
Hussain, S.1
Davanger, S.2
-
32
-
-
84877599432
-
Proteomic analysis of postsynaptic density in Alzheimer's disease
-
Zhou, J., et al. Proteomic analysis of postsynaptic density in Alzheimer's disease. Clin. Chim. Acta 420, 62-68 (2013).
-
(2013)
Clin. Chim. Acta
, vol.420
, pp. 62-68
-
-
Zhou, J.1
-
33
-
-
79955603399
-
Common proteomic changes in the hippocampus in schizophrenia and bipolar disorder and particular evidence for involvement of cornu ammonis regions 2 and 3
-
Focking, M., et al. Common proteomic changes in the hippocampus in schizophrenia and bipolar disorder and particular evidence for involvement of cornu ammonis regions 2 and 3. Arch Gen. Psychiatry 68, 477-488 (2011).
-
(2011)
Arch Gen. Psychiatry
, vol.68
, pp. 477-488
-
-
Focking, M.1
-
34
-
-
33745617102
-
Relative and absolute quantification of postsynaptic density proteome isolated from rat forebrain and cerebellum
-
Cheng, D., et al. Relative and absolute quantification of postsynaptic density proteome isolated from rat forebrain and cerebellum. Mol. Cell Proteomics 5, 1158-1170 (2006).
-
(2006)
Mol. Cell Proteomics
, vol.5
, pp. 1158-1170
-
-
Cheng, D.1
-
35
-
-
20844455428
-
Organelle proteomics of rat synaptic proteins: Correlation-profiling by isotope-coded affinity tagging in conjunction with liquid chromatographytandem mass spectrometry to reveal post-synaptic density specific proteins
-
Li, K., et al. Organelle proteomics of rat synaptic proteins: correlation-profiling by isotope-coded affinity tagging in conjunction with liquid chromatographytandem mass spectrometry to reveal post-synaptic density specific proteins. J. Proteome Res. 4, 725-733 (2005).
-
(2005)
J. Proteome Res.
, vol.4
, pp. 725-733
-
-
Li, K.1
-
36
-
-
2442683994
-
Semiquantitative proteomic analysis of rat forebrain postsynaptic density fractions by mass spectrometry
-
Peng, J., et al. Semiquantitative proteomic analysis of rat forebrain postsynaptic density fractions by mass spectrometry. J. Biol. Chem. 279, 21003-21011 (2004).
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 21003-21011
-
-
Peng, J.1
-
37
-
-
84928693138
-
ITRAQ-based quantitative analysis of hippocampal postsynaptic density-associated proteins in a rat chronic mild stress model of depression
-
Han, X., et al. iTRAQ-based quantitative analysis of hippocampal postsynaptic density-associated proteins in a rat chronic mild stress model of depression. Neuroscience 298, 220-292 (2015).
-
(2015)
Neuroscience
, vol.298
, pp. 220-292
-
-
Han, X.1
-
38
-
-
84909592027
-
In-depth protein profiling of the postsynaptic density from mouse hippocampus using data-independent acquisition proteomics
-
Distler, U., et al. In-depth protein profiling of the postsynaptic density from mouse hippocampus using data-independent acquisition proteomics. Proteomics 14, 2607-2613 (2014).
-
(2014)
Proteomics
, vol.14
, pp. 2607-2613
-
-
Distler, U.1
-
39
-
-
84867158871
-
Comparative study of human and mouse postsynaptic proteomes finds high compositional conservation and abundance differences for key synaptic proteins
-
Bayés, A., et al. Comparative study of human and mouse postsynaptic proteomes finds high compositional conservation and abundance differences for key synaptic proteins. PLoS ONE 7, e46683 (2012).
-
(2012)
PLoS ONE
, vol.7
, pp. e46683
-
-
Bayés, A.1
-
40
-
-
84871858478
-
Activity-dependent protein dynamics define interconnected cores of co-regulated postsynaptic proteins
-
Trinidad, J. C., Thalhammer, A., Burlingame, A. L., Schoepfer, R. Activity-dependent protein dynamics define interconnected cores of co-regulated postsynaptic proteins. Mol. Cell Proteomics. 12, 29-41 (2012).
-
(2012)
Mol. Cell Proteomics.
, vol.12
, pp. 29-41
-
-
Trinidad, J.C.1
Thalhammer, A.2
Burlingame, A.L.3
Schoepfer, R.4
-
41
-
-
85055616485
-
Rate of evolution in brain-expressed genes in humans and other primates
-
Wang, H. Y., et al. Rate of evolution in brain-expressed genes in humans and other primates. PLoS Biol. 5, e13 (2007).
-
(2007)
PLoS Biol.
, vol.5
, pp. e13
-
-
Wang, H.Y.1
-
42
-
-
46049118809
-
Evolutionary expansion and anatomical specialization of synapse proteome complexity
-
Emes, R. D., et al. Evolutionary expansion and anatomical specialization of synapse proteome complexity. Nat. Neurosci. 11, 799-806 (2008).
-
(2008)
Nat. Neurosci.
, vol.11
, pp. 799-806
-
-
Emes, R.D.1
-
43
-
-
0021066331
-
On the time for gene silencing at duplicate Loci
-
Watterson, G. A. On the time for gene silencing at duplicate Loci. Genetics 105, 745-766 (1983).
-
(1983)
Genetics
, vol.105
, pp. 745-766
-
-
Watterson, G.A.1
-
44
-
-
78649932630
-
2R and remodeling of vertebrate signal transduction engine
-
Huminiecki, L., Heldin, C. H. 2R and remodeling of vertebrate signal transduction engine. BMC Biol. 8, 146 (2010).
-
(2010)
BMC Biol.
, vol.8
, pp. 146
-
-
Huminiecki, L.1
Heldin, C.H.2
-
45
-
-
0032893932
-
Preservation of duplicate genes by complementary, degenerative mutations
-
Force, A., et al. Preservation of duplicate genes by complementary, degenerative mutations. Genetics 151, 1531-1545 (1999).
-
(1999)
Genetics
, vol.151
, pp. 1531-1545
-
-
Force, A.1
-
46
-
-
0014470429
-
Synaptic patterns of the superficial layers of the superior colliculus of the rat
-
Lund, R. D. Synaptic patterns of the superficial layers of the superior colliculus of the rat. J. Comp. Neurol 135, 179-208 (1969).
-
(1969)
J. Comp. Neurol
, vol.135
, pp. 179-208
-
-
Lund, R.D.1
-
47
-
-
84870232182
-
The membrane fusion enigma: SNAREs, Sec1/Munc18 proteins, and their accomplices-guilty as charged
-
Rizo, J., Südhof, T. C. The membrane fusion enigma: SNAREs, Sec1/Munc18 proteins, and their accomplices-guilty as charged. Annu. Rev. Cell Dev. Biol. 28, 279-308 (2012).
-
(2012)
Annu. Rev. Cell Dev. Biol.
, vol.28
, pp. 279-308
-
-
Rizo, J.1
Südhof, T.C.2
-
48
-
-
33750326365
-
SNAREs in neurons-beyond synaptic vesicle exocytosis (Review)
-
Wang, Y., Tang, B. L. SNAREs in neurons-beyond synaptic vesicle exocytosis (Review). Mol. Memb. Biol. 23, 377-384 (2009).
-
(2009)
Mol. Memb. Biol.
, vol.23
, pp. 377-384
-
-
Wang, Y.1
Tang, B.L.2
-
49
-
-
77649179060
-
A neuronal role for SNAP-23 in postsynaptic glutamate receptor trafficking
-
Suh, Y. H., et al. A neuronal role for SNAP-23 in postsynaptic glutamate receptor trafficking. Nature Neurosci. 13, 338-343 (2010).
-
(2010)
Nature Neurosci.
, vol.13
, pp. 338-343
-
-
Suh, Y.H.1
-
50
-
-
84873309459
-
LTP requires a unique postsynaptic SNARE fusion machinery
-
Jurado, S., et al. LTP requires a unique postsynaptic SNARE fusion machinery. Neuron 77, 542-558 (2013).
-
(2013)
Neuron
, vol.77
, pp. 542-558
-
-
Jurado, S.1
-
51
-
-
84877886601
-
CORVET and HOPS tethering complexes-coordinators of endosome and lysosome fusion
-
Balderhaar, H. J. K., Ungermann, C. CORVET and HOPS tethering complexes-coordinators of endosome and lysosome fusion. J. Cell Sci. 126, 1307-1316 (2013).
-
(2013)
J. Cell Sci.
, vol.126
, pp. 1307-1316
-
-
Balderhaar, H.J.K.1
Ungermann, C.2
-
53
-
-
84923021231
-
Regulation of postsynaptic function by the dementiarelated ESCRT-III subunit CHMP2B
-
Chassefeyre, R., et al. Regulation of postsynaptic function by the dementiarelated ESCRT-III subunit CHMP2B. J. Neurosci. 35, 3155-3173 (2015).
-
(2015)
J. Neurosci.
, vol.35
, pp. 3155-3173
-
-
Chassefeyre, R.1
-
54
-
-
84945470940
-
Zebrafish models of major depressive disorders
-
Fonseka, T. M., Wen, X.-Y., Foster, J. A., Kennedy, S. H. Zebrafish models of major depressive disorders. J. Neurosci. Res. 94, 3-14 (2016).
-
(2016)
J. Neurosci. Res.
, vol.94
, pp. 3-14
-
-
Fonseka, T.M.1
Wen, X.-Y.2
Foster, J.A.3
Kennedy, S.H.4
-
55
-
-
77953380297
-
Zebrafish: A model system to examine the neurodevelopmental basis of schizophrenia
-
Morris, J. A. Zebrafish: a model system to examine the neurodevelopmental basis of schizophrenia. Prog. Brain Res. 179, 97-106 (2009).
-
(2009)
Prog. Brain Res.
, vol.179
, pp. 97-106
-
-
Morris, J.A.1
-
56
-
-
84957428722
-
Building a zebrafish toolkit for investigating the pathobiology of epilepsy and identifying new treatments for epileptic seizures
-
Cunliffe, V. T. Building a zebrafish toolkit for investigating the pathobiology of epilepsy and identifying new treatments for epileptic seizures. J. Neurosci. Methods 260, 91-95 (2016).
-
(2016)
J. Neurosci. Methods
, vol.260
, pp. 91-95
-
-
Cunliffe, V.T.1
-
57
-
-
84920983678
-
Zebrafish as a systems toxicology model for developmental neurotoxicity testing
-
Nishimura, Y., et al. Zebrafish as a systems toxicology model for developmental neurotoxicity testing. Congenit Anom 55, 1-16 (2015).
-
(2015)
Congenit Anom
, vol.55
, pp. 1-16
-
-
Nishimura, Y.1
-
58
-
-
67149141899
-
Targeted tandem affinity purification of PSD-95 recovers core postsynaptic complexes and schizophrenia susceptibility proteins
-
Fernandez, E., et al. Targeted tandem affinity purification of PSD-95 recovers core postsynaptic complexes and schizophrenia susceptibility proteins. Mol. Syst. Biol. 5, 269 (2009).
-
(2009)
Mol. Syst. Biol.
, vol.5
, pp. 269
-
-
Fernandez, E.1
-
59
-
-
84893919352
-
De novo mutations in schizophrenia implicate synaptic networks
-
Fromer, M., et al. De novo mutations in schizophrenia implicate synaptic networks. Nature 506, 179-184 (2014).
-
(2014)
Nature
, vol.506
, pp. 179-184
-
-
Fromer, M.1
-
60
-
-
79960779323
-
FMRP stalls ribosomal translocation on mRNAs linked to synaptic function and autism
-
Darnell, J. C., et al. FMRP stalls ribosomal translocation on mRNAs linked to synaptic function and autism. Cell 146, 247-261 (2011).
-
(2011)
Cell
, vol.146
, pp. 247-261
-
-
Darnell, J.C.1
-
61
-
-
84862520770
-
Fiji: An open-source platform for biological-image analysis
-
Schindelin, J., et al. Fiji: an open-source platform for biological-image analysis. Nat. Methods 9, 676-682 (2012).
-
(2012)
Nat. Methods
, vol.9
, pp. 676-682
-
-
Schindelin, J.1
-
62
-
-
57449099865
-
Max Quant enables high peptide identification rates individualized p. P. B.-Range mass accuracies and proteome-wide protein quantification
-
Cox, J., Mann, M. MaxQuant enables high peptide identification rates, individualized p. p. b.-range mass accuracies and proteome-wide protein quantification. Nat. Biotechnol. 26, 1367-1372 (2008).
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 1367-1372
-
-
Cox, J.1
Mann, M.2
-
63
-
-
84907197082
-
Accurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ
-
Cox, J., et al. Accurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ. Mol. Cell Proteomics 13, 2513-2526 (2014).
-
(2014)
Mol. Cell Proteomics
, vol.13
, pp. 2513-2526
-
-
Cox, J.1
-
64
-
-
84976274986
-
The Perseus computational platform for comprehensive analysis of (prote)omics data
-
Tyanova, S., et al. The Perseus computational platform for comprehensive analysis of (prote)omics data. Nat. Methods 13, 731-740 (2016).
-
(2016)
Nat. Methods
, vol.13
, pp. 731-740
-
-
Tyanova, S.1
-
65
-
-
84946037477
-
Ensembl 2015
-
Cunningham, F., et al. Ensembl 2015. Nucleic Acids Res. 43, D662-D669 (2015).
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D662-D669
-
-
Cunningham, F.1
-
66
-
-
27144509163
-
A network-based analysis of systemic inflammation in humans
-
Calvano, S. E., et al. A network-based analysis of systemic inflammation in humans. Nature 437, 1032-1037 (2005).
-
(2005)
Nature
, vol.437
, pp. 1032-1037
-
-
Calvano, S.E.1
-
67
-
-
68449101067
-
Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt
-
Durinck, S., Spellman, P. T., Birney, E., Huber, W. Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt. Nat. Protoc. 4, 1184-1191 (2009).
-
(2009)
Nat. Protoc.
, vol.4
, pp. 1184-1191
-
-
Durinck, S.1
Spellman, P.T.2
Birney, E.3
Huber, W.4
-
68
-
-
84946735654
-
Gene Ontology Consortium: Going forward
-
Gene Ontology Consortium
-
Gene Ontology Consortium. Gene Ontology Consortium: going forward. Nucleic Acids Res. 43, D1049-D1056 (2015).
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D1049-D1056
-
-
-
69
-
-
84976875034
-
PANTHER version 10: Expanded protein families and functions, and analysis tools
-
Mi, H., Poudel, S., Muruganujan, A., Casagrande, J. T., Thomas, P. D. PANTHER version 10: expanded protein families and functions, and analysis tools. Nucleic Acids Res. 44, D336-D342 (2016).
-
(2016)
Nucleic Acids Res.
, vol.44
, pp. D336-D342
-
-
Mi, H.1
Poudel, S.2
Muruganujan, A.3
Casagrande, J.T.4
Thomas, P.D.5
-
70
-
-
84976907502
-
KEGG as a reference resource for gene and protein annotation
-
Kanehisa, M., Sato, Y., Kawashima, M., Furumichi, M., Tanabe, M. KEGG as a reference resource for gene and protein annotation. Nucleic Acids Res. 44, D457-D462 (2016).
-
(2016)
Nucleic Acids Res.
, vol.44
, pp. D457-D462
-
-
Kanehisa, M.1
Sato, Y.2
Kawashima, M.3
Furumichi, M.4
Tanabe, M.5
-
71
-
-
84976871411
-
2016 update of the PRIDE database and its related tools
-
Vizcáno, J. A., et al. 2016 update of the PRIDE database and its related tools. Nucleic Acids Res. 44, D447-D456 (2016).
-
(2016)
Nucleic Acids Res.
, vol.44
, pp. D447-D456
-
-
Vizcáno, J.A.1
|