-
1
-
-
84876798186
-
The zebrafish reference genome sequence and its relationship to the human genome
-
Howe, K., Clark, M. D., Torroja, C. F., Torrance, J., Berthelot, C., Muffato, M., Collins, J. E., Humphray, S., McLaren, K., Matthews, L., McLaren, S., Sealy, I., Caccamo, M., Churcher, C., Scott, C., Barrett, J. C., Koch, R., Rauch, G. J., White, S., Chow, W., Kilian, B., Quintais, L. T., Guerra-Assuncao, J. A., Zhou, Y., Gu, Y., Yen, J., Vogel, J. H., Eyre, T., Redmond, S., Banerjee, R., Chi, J., Fu, B., Langley, E., Maguire, S. F., Laird, G. K., Lloyd, D., Kenyon, E., Donaldson, S., Sehra, H., Almeida-King, J., Loveland, J., Trevanion, S., Jones, M., Quail, M., Willey, D., Hunt, A., Burton, J., Sims, S., McLay, K., Plumb, B., Davis, J., Clee, C., Oliver, K., Clark, R., Riddle, C., Eliott, D., Threadgold, G., Harden, G., Ware, D., Mortimer, B., Kerry, G., Heath, P., Phillimore, B., Tracey, A., Corby, N., Dunn, M., Johnson, C., Wood, J., Clark, S., Pelan, S., Griffiths, G., Smith, M., Glithero, R., Howden, P., Barker, N., Stevens, C., Harley, J., Holt, K., Panagiotidis, G., Lovell, J., Beasley, H., Henderson, C., Gordon, D., Auger, K., Wright, D., Collins, J., Raisen, C., Dyer, L., Leung, K., Robertson, L., Ambridge, K., Leongamornlert, D., McGuire, S., Gilderthorp, R., Griffiths, C., Manthravadi, D., Nichol, S., Barker, G., Whitehead, S., Kay, M., Brown, J., Murnane, C., Gray, E., Humphries, M., Sycamore, N., Barker, D., Saunders, D., Wallis, J., Babbage, A., Hammond, S., Mashreghi-Mohammadi, M., Barr, L., Martin, S., Wray, P., Ellington, A., Matthews, N., Ellwood, M., Woodmansey, R., Clark, G., Cooper, J., Tromans, A., Grafham, D., Skuce, C., Pandian, R., Andrews, R., Harrison, E., Kimberley, A., Garnett, J., Fosker, N., Hall, R., Garner, P., Kelly, D., Bird, C., Palmer, S., Gehring, I., Berger, A., Dooley, C. M., Ersan-Urun, Z., Eser, C., Geiger, H., Geisler, M., Karotki, L., Kirn, A., Konantz, J., Konantz, M., Oberlander, M., Rudolph-Geiger, S., Teucke, M., Osoegawa, K., Zhu, B., Rapp, A., Widaa, S., Langford, C., Yang, F., Carter, N. P., Harrow, J., Ning, Z., Herrero, J., Searle, S. M., Enright, A., Geisler, R., Plasterk, R. H., Lee, C., Westerfield, M., de Jong, P. J., Zon, L. I., Postlethwait, J. H., Nusslein-Volhard, C., Hubbard, T. J., Roest Crollius, H., Rogers, J., and Stemple, D. L. (2013) The zebrafish reference genome sequence and its relationship to the human genome. Nature 496, 498-503
-
(2013)
Nature
, vol.496
, pp. 498-503
-
-
Howe, K.1
Clark, M.D.2
Torroja, C.F.3
Torrance, J.4
Berthelot, C.5
Muffato, M.6
Collins, J.E.7
Humphray, S.8
McLaren, K.9
Matthews, L.10
McLaren, S.11
Sealy, I.12
Caccamo, M.13
Churcher, C.14
Scott, C.15
Barrett, J.C.16
Koch, R.17
Rauch, G.J.18
White, S.19
Chow, W.20
Kilian, B.21
Quintais, L.T.22
Guerra-Assuncao, J.A.23
Zhou, Y.24
Gu, Y.25
Yen, J.26
Vogel, J.H.27
Eyre, T.28
Redmond, S.29
Banerjee, R.30
Chi, J.31
Fu, B.32
Langley, E.33
Maguire, S.F.34
Laird, G.K.35
Lloyd, D.36
Kenyon, E.37
Donaldson, S.38
Sehra, H.39
Almeida-King, J.40
Loveland, J.41
Trevanion, S.42
Jones, M.43
Quail, M.44
Willey, D.45
Hunt, A.46
Burton, J.47
Sims, S.48
McLay, K.49
Plumb, B.50
Davis, J.51
Clee, C.52
Oliver, K.53
Clark, R.54
Riddle, C.55
Eliott, D.56
Threadgold, G.57
Harden, G.58
Ware, D.59
Mortimer, B.60
Kerry, G.61
Heath, P.62
Phillimore, B.63
Tracey, A.64
Corby, N.65
Dunn, M.66
Johnson, C.67
Wood, J.68
Clark, S.69
Pelan, S.70
Griffiths, G.71
Smith, M.72
Glithero, R.73
Howden, P.74
Barker, N.75
Stevens, C.76
Harley, J.77
Holt, K.78
Panagiotidis, G.79
Lovell, J.80
Beasley, H.81
Henderson, C.82
Gordon, D.83
Auger, K.84
Wright, D.85
Collins, J.86
Raisen, C.87
Dyer, L.88
Leung, K.89
Robertson, L.90
Ambridge, K.91
Leongamornlert, D.92
McGuire, S.93
Gilderthorp, R.94
Griffiths, C.95
Manthravadi, D.96
Nichol, S.97
Barker, G.98
Whitehead, S.99
more..
-
2
-
-
84867170355
-
Incorporating rna-seq data into the zebrafish ensembl genebuild
-
Collins, J. E., White, S., Searle, S. M., and Stemple, D. L. (2012) Incorporating RNA-seq data into the zebrafish Ensembl genebuild. Genome Res. 22, 2067-2078
-
(2012)
Genome Res.
, vol.22
, pp. 2067-2078
-
-
Collins, J.E.1
White, S.2
Searle, S.M.3
Stemple, D.L.4
-
3
-
-
78650642557
-
Defining the transcriptome and proteome in three functionally different human cell lines
-
Lundberg, E., Fagerberg, L., Klevebring, D., Matic, I., Geiger, T., Cox, J., Algenas, C., Lundeberg, J., Mann, M., and Uhlen, M. (2010) Defining the transcriptome and proteome in three functionally different human cell lines. Mol. Syst. Biol. 6, 450
-
(2010)
Mol. Syst. Biol.
, vol.6
, pp. 450
-
-
Lundberg, E.1
Fagerberg, L.2
Klevebring, D.3
Matic, I.4
Geiger, T.5
Cox, J.6
Algenas, C.7
Lundeberg, J.8
Mann, M.9
Uhlen, M.10
-
4
-
-
84870848593
-
De novo derivation of proteomes from transcriptomes for transcript and protein identification
-
Evans, V. C., Barker, G., Heesom, K. J., Fan, J., Bessant, C., and Matthews, D. A. (2012) De novo derivation of proteomes from transcriptomes for transcript and protein identification. Nat. Methods 9, 1207-1211
-
(2012)
Nat. Methods
, vol.9
, pp. 1207-1211
-
-
Evans, V.C.1
Barker, G.2
Heesom, K.3
Fan, J.4
Bessant, C.5
Matthews, D.A.6
-
5
-
-
84859323308
-
Vespa: Software to facilitate genomic annotation of prokaryotic organisms through integration of proteomic and transcriptomic data
-
Peterson, E. S., McCue, L. A., Schrimpe-Rutledge, A. C., Jensen, J. L., Walker, H., Kobold, M. A., Webb, S. R., Payne, S. H., Ansong, C., Adkins, J. N., Cannon, W. R., and Webb-Robertson, B. J. (2012) VESPA: software to facilitate genomic annotation of prokaryotic organisms through integration of proteomic and transcriptomic data. BMC Genomics 13, 131
-
(2012)
BMC Genomics
, vol.13
, pp. 131
-
-
Peterson, E.S.1
McCue, L.A.2
Schrimpe-Rutledge, A.C.3
Jensen, J.L.4
Walker, H.5
Kobold, M.A.6
Webb, S.R.7
Payne, S.H.8
Ansong, C.9
Adkins, J.N.10
Cannon, W.R.11
Webb-Robertson, B.J.12
-
6
-
-
84871859805
-
A bioinformatics approach for integrated transcriptomic and proteomic comparative analyses of model and nonsequenced anopheline vectors of human malaria parasites
-
Mohien, C. U., Colquhoun, D. R., Mathias, D. K., Gibbons, J. G., Armistead, J. S., Rodriguez, M. C., Rodriguez, M. H., Edwards, N. J., Hartler, J., Thallinger, G. G., Graham, D. R., Martinez-Barnetche, J., Rokas, A., and Dinglasan, R. R. (2013) A bioinformatics approach for integrated transcriptomic and proteomic comparative analyses of model and nonsequenced anopheline vectors of human malaria parasites. Mol. Cell. Proteomics 12, 120-131
-
(2013)
Mol. Cell. Proteomics
, vol.12
, pp. 120-131
-
-
Mohien, C.U.1
Colquhoun, D.R.2
Mathias, D.K.3
Gibbons, J.G.4
Armistead, J.S.5
Rodriguez, M.C.6
Rodriguez, M.H.7
Edwards, N.J.8
Hartler, J.9
Thallinger, G.G.10
Graham, D.R.11
Martinez-Barnetche, J.12
Rokas, A.13
Dinglasan, R.R.14
-
7
-
-
80555142954
-
A proteogenomic analysis of anopheles gambiae using highresolution fourier transform mass spectrometry
-
Chaerkady, R., Kelkar, D. S., Muthusamy, B., Kandasamy, K., Dwivedi, S. B., Sahasrabuddhe, N. A., Kim, M. S., Renuse, S., Pinto, S. M., Sharma, R., Pawar, H., Sekhar, N. R., Mohanty, A. K., Getnet, D., Yang, Y., Zhong, J., Dash, A. P., MacCallum, R. M., Delanghe, B., Mlambo, G., Kumar, A., Keshava Prasad, T. S., Okulate, M., Kumar, N., and Pandey, A. (2011) A proteogenomic analysis of Anopheles gambiae using highresolution Fourier transform mass spectrometry. Genome Res. 21, 1872-1881
-
(2011)
Genome Res.
, vol.21
, pp. 1872-1881
-
-
Chaerkady, R.1
Kelkar, D.S.2
Muthusamy, B.3
Kandasamy, K.4
Dwivedi, S.B.5
Sahasrabuddhe, N.A.6
Kim, M.S.7
Renuse, S.8
Pinto, S.M.9
Sharma, R.10
Pawar, H.11
Sekhar, N.R.12
Mohanty, A.K.13
Getnet, D.14
Yang, Y.15
Zhong, J.16
Dash, A.P.17
Maccallum, R.M.18
Delanghe, B.19
Mlambo, G.20
Kumar, A.21
Keshava Prasad, T.S.22
Okulate, M.23
Kumar, N.24
Pandey, A.25
more..
-
8
-
-
84855533919
-
Proteogenomic analysis of candida glabrata using high resolution mass spectrometry
-
Prasad, T. S., Harsha, H. C., Keerthikumar, S., Sekhar, N. R., Selvan, L. D., Kumar, P., Pinto, S. M., Muthusamy, B., Subbannayya, Y., Renuse, S., Chaerkady, R., Mathur, P. P., Ravikumar, R., and Pandey, A. (2012) Proteogenomic analysis of Candida glabrata using high resolution mass spectrometry. J. Proteome Res. 11, 247-260
-
(2012)
J. Proteome Res.
, vol.11
, pp. 247-260
-
-
Prasad, T.S.1
Harsha, H.C.2
Keerthikumar, S.3
Sekhar, N.R.4
Selvan, L.D.5
Kumar, P.6
Pinto, S.M.7
Muthusamy, B.8
Subbannayya, Y.9
Renuse, S.10
Chaerkady, R.11
Mathur, P.P.12
Ravikumar, R.13
Pandey, A.14
-
9
-
-
83055173265
-
Proteogenomic analysis of mycobacterium tuberculosis by high resolution mass spectrometry
-
Kelkar, D. S., Kumar, D., Kumar, P., Balakrishnan, L., Muthusamy, B., Yadav, A. K., Shrivastava, P., Marimuthu, A., Anand, S., Sundaram, H., Kingsbury, R., Harsha, H. C., Nair, B., Prasad, T. S., Chauhan, D. S., Katoch, K., Katoch, V. M., Chaerkady, R., Ramachandran, S., Dash, D., and Pandey, A. (2011) Proteogenomic analysis of Mycobacterium tuberculosis by high resolution mass spectrometry. Mol. Cell. Proteomics 10, M111.011627
-
(2011)
Mol. Cell. Proteomics
, vol.10
, pp. M111011627
-
-
Kelkar, D.S.1
Kumar, D.2
Kumar, P.3
Balakrishnan, L.4
Muthusamy, B.5
Yadav, A.K.6
Shrivastava, P.7
Marimuthu, A.8
Anand, S.9
Sundaram, H.10
Kingsbury, R.11
Harsha, H.C.12
Nair, B.13
Prasad, T.S.14
Chauhan, D.S.15
Katoch, K.16
Katoch, V.M.17
Chaerkady, R.18
Ramachandran, S.19
Dash, D.20
Pandey, A.21
more..
-
10
-
-
84860316503
-
A proteogenomic approach to map the proteome of an unsequenced pathogen-leishmania donovani
-
Pawar, H., Sahasrabuddhe, N. A., Renuse, S., Keerthikumar, S., Sharma, J., Kumar, G. S., Venugopal, A., Sekhar, N. R., Kelkar, D. S., Nemade, H., Khobragade, S. N., Muthusamy, B., Kandasamy, K., Harsha, H. C., Chaerkady, R., Patole, M. S., and Pandey, A. (2012) A proteogenomic approach to map the proteome of an unsequenced pathogen-Leishmania donovani. Proteomics 12, 832-844
-
(2012)
Proteomics
, vol.12
, pp. 832-844
-
-
Pawar, H.1
Sahasrabuddhe, N.A.2
Renuse, S.3
Keerthikumar, S.4
Sharma, J.5
Kumar, G.S.6
Venugopal, A.7
Sekhar, N.R.8
Kelkar, D.S.9
Nemade, H.10
Khobragade, S.N.11
Muthusamy, B.12
Kandasamy, K.13
Harsha, H.C.14
Chaerkady, R.15
Patole, M.S.16
Pandey, A.17
-
11
-
-
84901599553
-
A draft map of the human proteome
-
Kim, M. S., Pinto, S. M., Getnet, D., Nirujogi, R. S., Manda, S. S., Chaerkady, R., Madugundu, A. K., Kelkar, D. S., Isserlin, R., Jain, S., Thomas, J. K., Muthusamy, B., Leal-Rojas, P., Kumar, P., Sahasrabuddhe, N. A., Balakrishnan, L., Advani, J., George, B., Renuse, S., Selvan, L. D. N., Patil, A. H., Nanjappa, V., Radhakrishnan, A., Prasad, S., Subbannayya, T., Raju, R., Kumar, M., Sreenivasamurthy, S. K., Marimuthu, A., Sathe, G. J., Chavan, S., Datta, K. K., Subbannayya, Y., Sahu, A., Yelamanchi, S. D., Jayaram, S., Rajagopalan, P., Sharma, J., Murthy, K. R., Syed, N., Goel, R., Khan, A. K., Ahmad, S., Dey, G., Mudgal, K., Chatterjee, A., Huang, T., Zhong, J., Wu, X., Shaw, P. G., Freed, D., Zahari, M. S., Mukherjee, K. K., Shankar, S., Mahadevan, A., Lam, H., Mitchell, C. J., Shankar, S. K., Satishchandra, P., Schroeder, J. T., Sirdeshmukh, R., Maitra, A., Leach, S. D., Drake, C. G., Halushka, M. K., Prasad, T. S. K., Hruban, R. H., Kerr, C. L., Bader, G. D., Iacobuzio-Donahue, C. H., Gowda, H., and Pandey, A. (2014) A draft map of the human proteome. Nature 509, 575-581
-
(2014)
Nature
, vol.509
, pp. 575-581
-
-
Kim, M.S.1
Pinto, S.M.2
Getnet, D.3
Nirujogi, R.S.4
Manda, S.S.5
Chaerkady, R.6
Madugundu, A.K.7
Kelkar, D.S.8
Isserlin, R.9
Jain, S.10
Thomas, J.K.11
Muthusamy, B.12
Leal-Rojas, P.13
Kumar, P.14
Sahasrabuddhe, N.A.15
Balakrishnan, L.16
Advani, J.17
George, B.18
Renuse, S.19
Selvan, L.D.N.20
Patil, A.H.21
Nanjappa, V.22
Radhakrishnan, A.23
Prasad, S.24
Subbannayya, T.25
Raju, R.26
Kumar, M.27
Sreenivasamurthy, S.K.28
Marimuthu, A.29
Sathe, G.J.30
Chavan, S.31
Datta, K.K.32
Subbannayya, Y.33
Sahu, A.34
Yelamanchi, S.D.35
Jayaram, S.36
Rajagopalan, P.37
Sharma, J.38
Murthy, K.R.39
Syed, N.40
Goel, R.41
Khan, A.K.42
Ahmad, S.43
Dey, G.44
Mudgal, K.45
Chatterjee, A.46
Huang, T.47
Zhong, J.48
Wu, X.49
Shaw, P.G.50
Freed, D.51
Zahari, M.S.52
Mukherjee, K.K.53
Shankar, S.54
Mahadevan, A.55
Lam, H.56
Mitchell, C.J.57
Shankar, S.K.58
Satishchandra, P.59
Schroeder, J.T.60
Sirdeshmukh, R.61
Maitra, A.62
Leach, S.D.63
Drake, C.G.64
Halushka, M.K.65
Prasad, T.S.K.66
Hruban, R.H.67
Kerr, C.L.68
Bader, G.D.69
Iacobuzio-Donahue, C.H.70
Gowda, H.71
Pandey, A.72
more..
-
12
-
-
79959960525
-
Target-decoy approach and false discovery rate: When things may go wrong
-
Gupta, N., Bandeira, N., Keich, U., and Pevzner, P. A. (2011) Target-decoy approach and false discovery rate: when things may go wrong. J. Am. Soc. Mass Spectrom. 22, 1111-1120
-
(2011)
J. Am. Soc. Mass Spectrom.
, vol.22
, pp. 1111-1120
-
-
Gupta, N.1
Bandeira, N.2
Keich, U.3
Pevzner, P.A.4
-
13
-
-
84868310579
-
Addressing statistical biases in nucleotide-derived protein databases for proteogenomic search strategies
-
Blakeley, P., Overton, I. M., and Hubbard, S. J. (2012) Addressing statistical biases in nucleotide-derived protein databases for proteogenomic search strategies. J. Proteome Res. 11, 5221-5234
-
(2012)
J. Proteome Res.
, vol.11
, pp. 5221-5234
-
-
Blakeley, P.1
Overton, I.M.2
Hubbard, S.J.3
-
14
-
-
65449136284
-
Tophat: Discovering splice junctions with rna-seq
-
Trapnell, C., Pachter, L., and Salzberg, S. L. (2009) TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25, 1105-1111
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
15
-
-
84859885816
-
Differential gene and transcript expression analysis of rna-seq experiments with tophat and cufflinks
-
Trapnell, C., Roberts, A., Goff, L., Pertea, G., Kim, D., Kelley, D. R., Pimentel, H., Salzberg, S. L., Rinn, J. L., and Pachter, L. (2012) Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat. Protoc. 7, 562-578
-
(2012)
Nat. Protoc.
, vol.7
, pp. 562-578
-
-
Trapnell, C.1
Roberts, A.2
Goff, L.3
Pertea, G.4
Kim, D.5
Kelley, D.R.6
Pimentel, H.7
Salzberg, S.L.8
Rinn, J.L.9
Pachter, L.10
-
16
-
-
84876020023
-
Cpat: Coding-potential assessment tool using an alignment-free logistic regression model
-
Wang, L., Park, H. J., Dasari, S., Wang, S., Kocher, J. P., and Li, W. (2013) CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model. Nucleic Acids Res. 41, e74
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. e74
-
-
Wang, L.1
Park, H.J.2
Dasari, S.3
Wang, S.4
Kocher, J.P.5
Li, W.6
-
17
-
-
33644675365
-
Stable isotope labeling with amino acids in cell culture (silac) for studying dynamics of protein abundance and posttranslational modifications
-
Amanchy, R., Kalume, D. E., and Pandey, A. (2005) Stable isotope labeling with amino acids in cell culture (SILAC) for studying dynamics of protein abundance and posttranslational modifications. Sci. STKE 2005, l2
-
(2005)
Sci. STKE
, vol.2005
, pp. l2
-
-
Amanchy, R.1
Kalume, D.E.2
Pandey, A.3
-
18
-
-
59149090911
-
Strong cation exchange-based fractionation of lys-n-generated peptides facilitates the targeted analysis of post-translational modifications
-
Taouatas, N., Altelaar, A. F., Drugan, M. M., Helbig, A. O., Mohammed, S., and Heck, A. J. (2009) Strong cation exchange-based fractionation of Lys-N-generated peptides facilitates the targeted analysis of post-translational modifications. Mol. Cell. Proteomics 8, 190-200
-
(2009)
Mol. Cell. Proteomics
, vol.8
, pp. 190-200
-
-
Taouatas, N.1
Altelaar, A.F.2
Drugan, M.M.3
Helbig, A.O.4
Mohammed, S.5
Heck, A.J.6
-
19
-
-
38649083118
-
Assigning significance to peptides identified by tandem mass spectrometry using decoy databases
-
Kall, L., Storey, J. D., MacCoss, M. J., and Noble, W. S. (2008) Assigning significance to peptides identified by tandem mass spectrometry using decoy databases. J. Proteome Res. 7, 29-34
-
(2008)
J. Proteome Res.
, vol.7
, pp. 29-34
-
-
Kall, L.1
Storey, J.D.2
Maccoss, M.J.3
Noble, W.S.4
-
20
-
-
79956322553
-
Global quantification of mammalian gene expression control
-
Schwanhausser, B., Busse, D., Li, N., Dittmar, G., Schuchhardt, J., Wolf, J., Chen, W., and Selbach, M. (2011) Global quantification of mammalian gene expression control. Nature 473, 337-342
-
(2011)
Nature
, vol.473
, pp. 337-342
-
-
Schwanhausser, B.1
Busse, D.2
Li, N.3
Dittmar, G.4
Schuchhardt, J.5
Wolf, J.6
Chen, W.7
Selbach, M.8
-
21
-
-
84864000375
-
David-ws: A stateful web service to facilitate gene/protein list analysis
-
Jiao, X., Sherman, B. T., Huang da, W., Stephens, R., Baseler, M. W., Lane, H. C., and Lempicki, R. A. (2012) DAVID-WS: a stateful web service to facilitate gene/protein list analysis. Bioinformatics 28, 1805-1806
-
(2012)
Bioinformatics
, vol.28
, pp. 1805-1806
-
-
Jiao, X.1
Sherman, B.T.2
Huangda, W.3
Stephens, R.4
Baseler, M.W.5
Lane, H.C.6
Lempicki, R.A.7
-
22
-
-
84891801883
-
Proteogenomic database construction driven from large scale rna-seq data
-
Woo, S., Cha, S. W., Merrihew, G., He, Y., Castellana, N., Guest, C., Maccoss, M., and Bafna, V. (2014) Proteogenomic database construction driven from large scale RNA-seq data. J. Proteome Res. 13, 21-28
-
(2014)
J. Proteome Res.
, vol.13
, pp. 21-28
-
-
Woo, S.1
Cha, S.W.2
Merrihew, G.3
He, Y.4
Castellana, N.5
Guest, C.6
Maccoss, M.7
Bafna, V.8
-
23
-
-
84875634162
-
Integrative genomics viewer (igv): High-performance genomics data visualization and exploration
-
Thorvaldsdottir, H., Robinson, J. T., and Mesirov, J. P. (2012) Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Brief Bioinform. 14, 178-192
-
(2012)
Brief Bioinform.
, vol.14
, pp. 178-192
-
-
Thorvaldsdottir, H.1
Robinson, J.T.2
Mesirov, J.P.3
-
24
-
-
84862221167
-
Smart 7: Recent updates to the protein domain annotation resource
-
Letunic, I., Doerks, T., and Bork, P. (2012) SMART 7: recent updates to the protein domain annotation resource. Nucleic Acids Res. 40, D302-D305
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. D302-D305
-
-
Letunic, I.1
Doerks, T.2
Bork, P.3
-
25
-
-
84874762979
-
The proteomics identifications (pride) database and associated tools: Status in 2013
-
Vizcaino, J. A., Cote, R. G., Csordas, A., Dianes, J. A., Fabregat, A., Foster, J. M., Griss, J., Alpi, E., Birim, M., Contell, J., O'Kelly, G., Schoenegger, A., Ovelleiro, D., Perez-Riverol, Y., Reisinger, F., Rios, D., Wang, R., and Hermjakob, H. (2013) The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013. Nucleic Acids Res. 41, D1063-D1069
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D1063-D1069
-
-
Vizcaino, J.A.1
Cote, R.G.2
Csordas, A.3
Dianes, J.A.4
Fabregat, A.5
Foster, J.M.6
Griss, J.7
Alpi, E.8
Birim, M.9
Contell, J.10
O'Kelly, G.11
Schoenegger, A.12
Ovelleiro, D.13
Perez-Riverol, Y.14
Reisinger, F.15
Rios, D.16
Wang, R.17
Hermjakob, H.18
-
26
-
-
84872594090
-
Transcriptomic analyses of sexual dimorphism of the zebrafish liver and the effect of sex hormones
-
Zheng, W., Xu, H., Lam, S. H., Luo, H., Karuturi, R. K., and Gong, Z. (2013) Transcriptomic analyses of sexual dimorphism of the zebrafish liver and the effect of sex hormones. PLoS One 8, e53562
-
(2013)
PLoS One
, vol.8
, pp. e53562
-
-
Zheng, W.1
Xu, H.2
Lam, S.H.3
Luo, H.4
Karuturi, R.K.5
Gong, Z.6
-
27
-
-
84867163995
-
Extensive alternative polyadenylation during zebrafish development
-
Ulitsky, I., Shkumatava, A., Jan, C. H., Subtelny, A. O., Koppstein, D., Bell, G. W., Sive, H., and Bartel, D. P. (2012) Extensive alternative polyadenylation during zebrafish development. Genome Res. 22, 2054-2066
-
(2012)
Genome Res.
, vol.22
, pp. 2054-2066
-
-
Ulitsky, I.1
Shkumatava, A.2
Jan, C.H.3
Subtelny, A.O.4
Koppstein, D.5
Bell, G.W.6
Sive, H.7
Bartel, D.P.8
-
28
-
-
84898719148
-
Global protein expression profiling of zebrafish organs based on in vivo incorporation of stable isotopes
-
Nolte, H., Konzer, A., Ruhs, A., Jungblut, B., Braun, T., and Kruger, M. (2014) Global protein expression profiling of zebrafish organs based on in vivo incorporation of stable isotopes. J. Proteome Res. 13, 2162-2174
-
(2014)
J. Proteome Res.
, vol.13
, pp. 2162-2174
-
-
Nolte, H.1
Konzer, A.2
Ruhs, A.3
Jungblut, B.4
Braun, T.5
Kruger, M.6
-
29
-
-
0035577382
-
A reassessment of the translation initiation codon in vertebrates
-
Peri, S., and Pandey, A. (2001) A reassessment of the translation initiation codon in vertebrates. Trends Genet. 17, 685-687
-
(2001)
Trends Genet.
, vol.17
, pp. 685-687
-
-
Peri, S.1
Pandey, A.2
-
30
-
-
84857836107
-
Systematic identification of long noncoding rnas expressed during zebrafish embryogenesis
-
Pauli, A., Valen, E., Lin, M. F., Garber, M., Vastenhouw, N. L., Levin, J. Z., Fan, L., Sandelin, A., Rinn, J. L., Regev, A., and Schier, A. F. (2012) Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis. Genome Res. 22, 577-591
-
(2012)
Genome Res.
, vol.22
, pp. 577-591
-
-
Pauli, A.1
Valen, E.2
Lin, M.F.3
Garber, M.4
Vastenhouw, N.L.5
Levin, J.Z.6
Fan, L.7
Sandelin, A.8
Rinn, J.L.9
Regev, A.10
Schier, A.F.11
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