Organelle proteomics of rat synaptic proteins: Correlation-profiling by isotope-coded affinity tagging in conjunction with liquid chromatography-tandem mass spectrometry to reveal post-synaptic density specific proteins

Journal of Proteome Research

Volumn 4, Issue 3, 2005, Pages 725-733

  Li, Ka Wan ^a   Hornshaw, Martin P ^b   Van Minnen, Jan ^a   Smalla, Karl Heinz ^c   Gundelfinger, Eckart D ^c   Smit, August B ^a  

^a VU UNIVERSITY AMSTERDAM   (Netherlands)

^b Applied Biosystems   (United Kingdom)

^c LEIBNIZ INSTITUTE FOR NEUROBIOLOGY   (Germany)

Author keywords

ICAT; MALDI TOF TOF MS; Postsynaptic density; Rat; Synapse

Indexed keywords

CYTOSKELETON PROTEIN; MITOCHONDRIAL PROTEIN; PHOSPHATASE; PROTEIN KINASE; SYNAPTOPHYSIN;

ANIMAL CELL; ARTICLE; BRAIN TISSUE; CONTROLLED STUDY; ENERGY YIELD; IMMUNOELECTRON MICROSCOPY; ION EXCHANGE CHROMATOGRAPHY; ISOTOPE LABELING; LIQUID CHROMATOGRAPHY; MITOCHONDRION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DEGRADATION; PROTEIN DOMAIN; PROTEOMICS; RAT; REVERSED PHASE LIQUID CHROMATOGRAPHY; SYNAPSE; SYNAPTIC MEMBRANE; TANDEM MASS SPECTROMETRY;

AFFINITY LABELS; ANIMALS; CELL FRACTIONATION; CHROMATOGRAPHY; MASS SPECTROMETRY; MICROFILAMENT PROTEINS; NERVE TISSUE PROTEINS; ORGANELLES; PROSENCEPHALON; PROTEOMICS; RATS; SYNAPSES; SYNAPTOPHYSIN;

EID: 20844455428     PISSN: 15353893     EISSN: None     Source Type: Journal    
DOI: 10.1021/pr049802+     Document Type: Article

References (24)

1. Kikuchi, M.; Hatano, N.; Yokota, S.; Shimozawa, N.; Imanaka, T.; Taniguchi, H. J. Biol. Chem. 2004, 279, 421-428.
2. Blondeau, F.; Ritter, B.; Allaire, P. D.; Wasiak, S.; Girard, M.; Hussain, N. K.; Angers, A.; Legendre-Guillemin, V.; Roy, L.; Boismenu, D.; Kearney, R. E.; Bell, A. W.; Bergeron, J. J.; McPherson, P. S. Proc. Natl. Acad. Sci. U. S. A. 2004, 101, 3833-3838.
3. Warnock, D. E.; Fahy, E.; Taylor, S. W. Mass Spectrom. Rev. 2004, 23, 259-280.
4. Brunet, S.; Thibault, P.; Gagnon, E.; Kearney, P.; Bergeron, J. J.; Desjardins, M. Trends Cell Biol. 2003, 13, 629-638.
5. Grant, S. G. Bioessays 2003, 25, 1229-1235.
6. Huber, L. A.; Pfaller, K.; Vietor, I. Circ. Res. 2003, 92, 962-968.
7. Andersen, J. S.; Wilkinson, C. J.; Mayor, T.; Mortensen, P.; Nigg, E. A.; Mann, M. Nature 2003, 426, 570-574.
8. Dunkley, T. P.; Dupree, P.; Watson, R. B.; Lilley, K. S. Biochem. Soc. Trans. 2004, 32, 520-523.
9. Ziff, E. B. Neuron 1997, 19, 1163-1174.
10. Barry, M. F.; Ziff, E. B. Curr. Opin. Neurobiol. 2002, 12, 279-286.
11. Ackermann, M.; Malus, A. Nat. Neurosci. 2003, 6, 1194-1200.
12. Peng, J.; Kim, M. J.; Cheng, D.; Duong, D. M.; Gygi, S. P.; Sheng, M. J. Biol. Chem. 2004, 279, 21003-21011.
13. Yoshimura, Y.; Yamauchi, Y.; Shinkawa, T.; Taoka, M.; Donai, H.; Takahashi, N.; Isobe, T.; Yamauchi, T. J. Neurochem. 2004, 88, 759-768.
14. Li, K. W.; Hornshaw, M. P.; Van Der Schors, R. C.; Watson, R.; Tate, S.; Casetta, B.; Jimenez, C. R.; Gouwenberg, Y.; Gundelfinger, E. D.; Smalla, K. H.; Smit, A. B. J. Biol. Chem. 2004, 279, 987-1002.
15. Jordan, B. A.; Fernholz, B. D.; Boussac, M.; Xu, C.; Grigorean, G.; Ziff, E. B.; Neubert, T. A. Mol. Cell Proteomics 2004, 3, 857-871.
16. Wyneken, U.; Smalla, K. H.; Marengo, J. J.; Soto, D.; de la Cerda, A.; Tischmeyer, W.; Grimm, R.; Boeckers, T. M.; Wolf, G.; Orrego, F.; Gundelfinger, E. D. Neuroscience 2001, 102, 65-74.
17. Kennedy, M. B. Science 2000, 290, 750-754.
18. Garner, C. C.; Nash, J.; Huganir, R. L. Trends Cell Biol. 2000, 10, 274-280.
19. Sheng, M.; Kim, M. J. Science 2002, 298, 776-780.
20. Inaba, Y.; Tian, Q. B.; Okano, A.; Zhang, J. P.; Sakagami, H.; Miyazawa, S.; Li, W.; Komiyama, A.; Inokuchi, K.; Kondo, H.; Suzuki, T. J Neurochem. 2004, 89, 1347-1357.
21. Kim, J. H.; Liao, D.; Lau, L. F.; Huganir, R. L. Neuron 1998, 20, 683-691.
22. Ehlers, M. D. Nat. Neurosci. 2003, 6, 231-242.
23. Colledge, M.; Snyder, E. M.; Crozier, R. A.; Soderling, J. A.; Jin, Y.; Langeberg, L. K.; Lu, H.; Bear, M. F.; Scott, J. D. Neuron 2003, 40, 595-607.
24. Ross, P. L.; Huang, Y. N.; Marchese, J. N.; Williamson, B.; Parker, K.; Hattan, S.; Khainovski, N.; Pillai, S.; Dey, S.; Daniels, S.; Purkayastha, S.; Juhasz, P.; Martin, S.; Bartlet-Jones, M.; He, F.; Jacobson, A.; Pappin, D. J. Mol. Cell Proteomics 2004, 3, 1154-1169.