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Volumn 168, Issue 6, 2017, Pages 1126-1134.e9

Remnants of an Ancient Metabolism without Phosphate

Author keywords

network expansion; origin of life; phosphate; systems biology; thioester world

Indexed keywords

IRON SULFUR PROTEIN; PHOSPHATE; PREBIOTIC AGENT; RNA; THIOESTER; ADENINE NUCLEOTIDE; COENZYME; COENZYME A;

EID: 85014099726     PISSN: 00928674     EISSN: 10974172     Source Type: Journal    
DOI: 10.1016/j.cell.2017.02.001     Document Type: Article
Times cited : (167)

References (66)
  • 1
    • 84885002359 scopus 로고    scopus 로고
    • Readily available phosphate from minerals in early aqueous environments on Mars
    • Adcock, C.T., Hausrath, E.M., Forster, P.M., Readily available phosphate from minerals in early aqueous environments on Mars. Nat. Geosci. 6 (2013), 824–827.
    • (2013) Nat. Geosci. , vol.6 , pp. 824-827
    • Adcock, C.T.1    Hausrath, E.M.2    Forster, P.M.3
  • 2
    • 84862260215 scopus 로고    scopus 로고
    • Thermodynamic constraints shape the structure of carbon fixation pathways
    • Bar-Even, A., Flamholz, A., Noor, E., Milo, R., Thermodynamic constraints shape the structure of carbon fixation pathways. Biochim. Biophys. Acta 1817 (2012), 1646–1659.
    • (2012) Biochim. Biophys. Acta , vol.1817 , pp. 1646-1659
    • Bar-Even, A.1    Flamholz, A.2    Noor, E.3    Milo, R.4
  • 4
    • 84873333102 scopus 로고    scopus 로고
    • The compositional and evolutionary logic of metabolism
    • Braakman, R., Smith, E., The compositional and evolutionary logic of metabolism. Phys. Biol., 10, 2013, 011001.
    • (2013) Phys. Biol. , vol.10 , pp. 011001
    • Braakman, R.1    Smith, E.2
  • 5
    • 84871712835 scopus 로고    scopus 로고
    • Energy conservation via electron bifurcating ferredoxin reduction and proton/Na(+) translocating ferredoxin oxidation
    • Buckel, W., Thauer, R.K., Energy conservation via electron bifurcating ferredoxin reduction and proton/Na(+) translocating ferredoxin oxidation. Biochim. Biophys. Acta 1827 (2013), 94–113.
    • (2013) Biochim. Biophys. Acta , vol.1827 , pp. 94-113
    • Buckel, W.1    Thauer, R.K.2
  • 6
    • 3042639896 scopus 로고    scopus 로고
    • Transition metal sulfides and the origins of metabolism
    • Cody, G.D., Transition metal sulfides and the origins of metabolism. Annu. Rev. Earth Planet. Sci. 32 (2004), 569–599.
    • (2004) Annu. Rev. Earth Planet. Sci. , vol.32 , pp. 569-599
    • Cody, G.D.1
  • 8
    • 2342508557 scopus 로고    scopus 로고
    • Assaying the catalytic potential of transition metal sulfides for abiotic carbon fixation
    • Cody, G., Boctor, N., Brandes, J., Filley, T., Hazen, R., Yoder, H., Assaying the catalytic potential of transition metal sulfides for abiotic carbon fixation. Geochim. Cosmochim. Acta 68 (2004), 2185–2196.
    • (2004) Geochim. Cosmochim. Acta , vol.68 , pp. 2185-2196
    • Cody, G.1    Boctor, N.2    Brandes, J.3    Filley, T.4    Hazen, R.5    Yoder, H.6
  • 9
    • 78650987950 scopus 로고    scopus 로고
    • Rapid evolutionary innovation during an Archaean genetic expansion
    • David, L.A., Alm, E.J., Rapid evolutionary innovation during an Archaean genetic expansion. Nature 469 (2011), 93–96.
    • (2011) Nature , vol.469 , pp. 93-96
    • David, L.A.1    Alm, E.J.2
  • 10
    • 0003925867 scopus 로고
    • Blueprint for a cell: the nature and origin of life
    • Neil Patterson Publishers, Carolina Biological Supply Company Burlington, N.C.
    • de Duve, C., Blueprint for a cell: the nature and origin of life. 1991, Neil Patterson Publishers, Carolina Biological Supply Company, Burlington, N.C.
    • (1991)
    • de Duve, C.1
  • 13
    • 0001538398 scopus 로고
    • An approach to the evolution of metabolism
    • Eakin, R.E., An approach to the evolution of metabolism. Proc. Natl. Acad. Sci. USA 49 (1963), 360–366.
    • (1963) Proc. Natl. Acad. Sci. USA , vol.49 , pp. 360-366
    • Eakin, R.E.1
  • 14
    • 18244404606 scopus 로고    scopus 로고
    • Structural analysis of expanding metabolic networks
    • Ebenhöh, O., Handorf, T., Heinrich, R., Structural analysis of expanding metabolic networks. Genome Inform 15 (2004), 35–45.
    • (2004) Genome Inform , vol.15 , pp. 35-45
    • Ebenhöh, O.1    Handorf, T.2    Heinrich, R.3
  • 15
    • 0001202417 scopus 로고
    • Evolution of the structure of ferredoxin based on living relics of primitive amino Acid sequences
    • Eck, R.V., Dayhoff, M.O., Evolution of the structure of ferredoxin based on living relics of primitive amino Acid sequences. Science 152 (1966), 363–366.
    • (1966) Science , vol.152 , pp. 363-366
    • Eck, R.V.1    Dayhoff, M.O.2
  • 16
    • 84861429699 scopus 로고    scopus 로고
    • eQuilibrator–the biochemical thermodynamics calculator
    • Flamholz, A., Noor, E., Bar-Even, A., Milo, R., eQuilibrator–the biochemical thermodynamics calculator. Nucleic Acids Res. 40 (2012), D770–D775.
    • (2012) Nucleic Acids Res. , vol.40 , pp. D770-D775
    • Flamholz, A.1    Noor, E.2    Bar-Even, A.3    Milo, R.4
  • 17
    • 80053227684 scopus 로고    scopus 로고
    • Alternative pathways of carbon dioxide fixation: insights into the early evolution of life?
    • Fuchs, G., Alternative pathways of carbon dioxide fixation: insights into the early evolution of life?. Annu. Rev. Microbiol. 65 (2011), 631–658.
    • (2011) Annu. Rev. Microbiol. , vol.65 , pp. 631-658
    • Fuchs, G.1
  • 20
    • 0015218669 scopus 로고
    • Role for ferredoxins in the origin of life and biological evolution
    • Hall, D.O., Cammack, R., Rao, K.K., Role for ferredoxins in the origin of life and biological evolution. Nature 233 (1971), 136–138.
    • (1971) Nature , vol.233 , pp. 136-138
    • Hall, D.O.1    Cammack, R.2    Rao, K.K.3
  • 21
    • 84933096510 scopus 로고
    • Evolution and Ecology of Phosphorus Metabolism
    • K. Dose S.W. Fox G.A. Deborin T.E. Pavlovskaya Springer
    • Halmann, M., Evolution and Ecology of Phosphorus Metabolism. Dose, K., Fox, S.W., Deborin, G.A., Pavlovskaya, T.E., (eds.) The Origin of Life and Evolutionary Biochemistry, 1974, Springer, 169–182.
    • (1974) The Origin of Life and Evolutionary Biochemistry , pp. 169-182
    • Halmann, M.1
  • 22
    • 26244437466 scopus 로고    scopus 로고
    • Expanding metabolic networks: scopes of compounds, robustness, and evolution
    • Handorf, T., Ebenhöh, O., Heinrich, R., Expanding metabolic networks: scopes of compounds, robustness, and evolution. J. Mol. Evol. 61 (2005), 498–512.
    • (2005) J. Mol. Evol. , vol.61 , pp. 498-512
    • Handorf, T.1    Ebenhöh, O.2    Heinrich, R.3
  • 23
    • 0016612552 scopus 로고
    • Speculations on the origin and evolution of metabolism
    • Hartman, H., Speculations on the origin and evolution of metabolism. J. Mol. Evol. 4 (1975), 359–370.
    • (1975) J. Mol. Evol. , vol.4 , pp. 359-370
    • Hartman, H.1
  • 24
    • 0011216415 scopus 로고
    • Conjectures and reveries
    • Hartman, H., Conjectures and reveries. Photosynth. Res. 33 (1992), 171–176.
    • (1992) Photosynth. Res. , vol.33 , pp. 171-176
    • Hartman, H.1
  • 25
    • 77955287882 scopus 로고    scopus 로고
    • Mineral surfaces, geochemical complexities, and the origins of life
    • Hazen, R.M., Sverjensky, D.A., Mineral surfaces, geochemical complexities, and the origins of life. Cold Spring Harb. Perspect. Biol., 2, 2010, a002162.
    • (2010) Cold Spring Harb. Perspect. Biol. , vol.2 , pp. a002162
    • Hazen, R.M.1    Sverjensky, D.A.2
  • 27
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: kyoto encyclopedia of genes and genomes
    • Kanehisa, M., Goto, S., KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 28 (2000), 27–30.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 28
    • 0029591935 scopus 로고
    • Are polyphosphates or phosphate esters prebiotic reagents?
    • Keefe, A.D., Miller, S.L., Are polyphosphates or phosphate esters prebiotic reagents?. J. Mol. Evol. 41 (1995), 693–702.
    • (1995) J. Mol. Evol. , vol.41 , pp. 693-702
    • Keefe, A.D.1    Miller, S.L.2
  • 29
    • 0028901007 scopus 로고
    • A possible prebiotic synthesis of pantetheine, a precursor to coenzyme A
    • Keefe, A.D., Newton, G.L., Miller, S.L., A possible prebiotic synthesis of pantetheine, a precursor to coenzyme A. Nature 373 (1995), 683–685.
    • (1995) Nature , vol.373 , pp. 683-685
    • Keefe, A.D.1    Newton, G.L.2    Miller, S.L.3
  • 30
    • 84899564808 scopus 로고    scopus 로고
    • Non-enzymatic glycolysis and pentose phosphate pathway-like reactions in a plausible Archean ocean
    • Keller, M.A., Turchyn, A.V., Ralser, M., Non-enzymatic glycolysis and pentose phosphate pathway-like reactions in a plausible Archean ocean. Mol. Syst. Biol., 10, 2014, 725.
    • (2014) Mol. Syst. Biol. , vol.10 , pp. 725
    • Keller, M.A.1    Turchyn, A.V.2    Ralser, M.3
  • 32
    • 0019263026 scopus 로고
    • Evolution of the coenzymes
    • King, G.A., Evolution of the coenzymes. Biosystems 13 (1980), 23–45.
    • (1980) Biosystems , vol.13 , pp. 23-45
    • King, G.A.1
  • 33
    • 72149118443 scopus 로고    scopus 로고
    • Elevated concentrations of formate, acetate and dissolved organic carbon found at the Lost City hydrothermal field
    • Lang, S.Q., Butterfield, D.A., Schulte, M., Kelley, D.S., Lilley, M.D., Elevated concentrations of formate, acetate and dissolved organic carbon found at the Lost City hydrothermal field. Geochim. Cosmochim. Acta 74 (2010), 941–952.
    • (2010) Geochim. Cosmochim. Acta , vol.74 , pp. 941-952
    • Lang, S.Q.1    Butterfield, D.A.2    Schulte, M.3    Kelley, D.S.4    Lilley, M.D.5
  • 34
    • 0023163876 scopus 로고
    • Chemical reactions on clays
    • Laszlo, P., Chemical reactions on clays. Science 235 (1987), 1473–1477.
    • (1987) Science , vol.235 , pp. 1473-1477
    • Laszlo, P.1
  • 35
    • 28444469788 scopus 로고    scopus 로고
    • Mapping PDB chains to UniProtKB entries
    • Martin, A.C.R., Mapping PDB chains to UniProtKB entries. Bioinformatics 21 (2005), 4297–4301.
    • (2005) Bioinformatics , vol.21 , pp. 4297-4301
    • Martin, A.C.R.1
  • 36
    • 35148861695 scopus 로고    scopus 로고
    • On the origin of biochemistry at an alkaline hydrothermal vent
    • Martin, W., Russell, M.J., On the origin of biochemistry at an alkaline hydrothermal vent. Philos. Trans. R. Soc. Lond. B Biol. Sci. 362 (2007), 1887–1925.
    • (2007) Philos. Trans. R. Soc. Lond. B Biol. Sci. , vol.362 , pp. 1887-1925
    • Martin, W.1    Russell, M.J.2
  • 37
    • 0001414196 scopus 로고
    • Deamination of serine. I. Catalytic deamination of serine and cysteine by pyridoxal and metal salts
    • Metzler, D.E., Snell, E.E., Deamination of serine. I. Catalytic deamination of serine and cysteine by pyridoxal and metal salts. J. Biol. Chem. 198 (1952), 353–361.
    • (1952) J. Biol. Chem. , vol.198 , pp. 353-361
    • Metzler, D.E.1    Snell, E.E.2
  • 38
    • 84055190859 scopus 로고    scopus 로고
    • Functional capabilities of the earliest peptides and the emergence of life
    • Milner-White, E.J., Russell, M.J., Functional capabilities of the earliest peptides and the emergence of life. Genes (Basel) 2 (2011), 671–688.
    • (2011) Genes (Basel) , vol.2 , pp. 671-688
    • Milner-White, E.J.1    Russell, M.J.2
  • 39
    • 2942622384 scopus 로고    scopus 로고
    • Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotes
    • Mirkin, B.G., Fenner, T.I., Galperin, M.Y., Koonin, E.V., Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotes. BMC Evol. Biol., 3, 2003, 2.
    • (2003) BMC Evol. Biol. , vol.3 , pp. 2
    • Mirkin, B.G.1    Fenner, T.I.2    Galperin, M.Y.3    Koonin, E.V.4
  • 41
    • 78049446734 scopus 로고    scopus 로고
    • Ligand field theory and the origin of life as an emergent feature of the periodic table of elements
    • Morowitz, H.J., Srinivasan, V., Smith, E., Ligand field theory and the origin of life as an emergent feature of the periodic table of elements. Biol. Bull. 219 (2010), 1–6.
    • (2010) Biol. Bull. , vol.219 , pp. 1-6
    • Morowitz, H.J.1    Srinivasan, V.2    Smith, E.3
  • 42
    • 0004026407 scopus 로고    scopus 로고
    • Lehninger Principles of Biochemistry
    • Fourth Edition W. H. Freeman
    • Nelson, D.L., Cox, M.M., Lehninger Principles of Biochemistry. Fourth Edition, 2005, W. H. Freeman.
    • (2005)
    • Nelson, D.L.1    Cox, M.M.2
  • 44
    • 84880781653 scopus 로고    scopus 로고
    • Consistent estimation of Gibbs energy using component contributions
    • Noor, E., Haraldsdóttir, H.S., Milo, R., Fleming, R.M.T., Consistent estimation of Gibbs energy using component contributions. PLoS Comput. Biol., 9, 2013, e1003098.
    • (2013) PLoS Comput. Biol. , vol.9 , pp. e1003098
    • Noor, E.1    Haraldsdóttir, H.S.2    Milo, R.3    Fleming, R.M.T.4
  • 45
    • 84882392351 scopus 로고    scopus 로고
    • Reactivity landscape of pyruvate under simulated hydrothermal vent conditions
    • 13283-8
    • Novikov, Y., Copley, S.D., Reactivity landscape of pyruvate under simulated hydrothermal vent conditions. Proc Natl Acad Sci USA, 110, 2013 13283-8.
    • (2013) Proc Natl Acad Sci USA , vol.110
    • Novikov, Y.1    Copley, S.D.2
  • 46
    • 84930227327 scopus 로고    scopus 로고
    • Using Genome-scale Models to Predict Biological Capabilities
    • O'Brien, E.J., Monk, J.M., Palsson, B.O., et al. Using Genome-scale Models to Predict Biological Capabilities. Cell 161 (2015), 971–987.
    • (2015) Cell , vol.161 , pp. 971-987
    • O'Brien, E.J.1    Monk, J.M.2    Palsson, B.O.3
  • 47
    • 0034682335 scopus 로고    scopus 로고
    • Lateral gene transfer and the nature of bacterial innovation
    • Ochman, H., Lawrence, J.G., Groisman, E.A., Lateral gene transfer and the nature of bacterial innovation. Nature 405 (2000), 299–304.
    • (2000) Nature , vol.405 , pp. 299-304
    • Ochman, H.1    Lawrence, J.G.2    Groisman, E.A.3
  • 49
    • 38949180351 scopus 로고    scopus 로고
    • Rethinking early Earth phosphorus geochemistry
    • Pasek, M.A., Rethinking early Earth phosphorus geochemistry. Proc. Natl. Acad. Sci. USA 105 (2008), 853–858.
    • (2008) Proc. Natl. Acad. Sci. USA , vol.105 , pp. 853-858
    • Pasek, M.A.1
  • 50
    • 84879304088 scopus 로고    scopus 로고
    • Evidence for reactive reduced phosphorus species in the early Archean ocean
    • Pasek, M.A., Harnmeijer, J.P., Buick, R., Gull, M., Atlas, Z., Evidence for reactive reduced phosphorus species in the early Archean ocean. Proc. Natl. Acad. Sci. USA 110 (2013), 10089–10094.
    • (2013) Proc. Natl. Acad. Sci. USA , vol.110 , pp. 10089-10094
    • Pasek, M.A.1    Harnmeijer, J.P.2    Buick, R.3    Gull, M.4    Atlas, Z.5
  • 51
    • 1242329428 scopus 로고    scopus 로고
    • Prebiotic Amino Acids as Asymmetric Catalysts
    • Pizzarello, S., Weber, A.L., Prebiotic Amino Acids as Asymmetric Catalysts. Science., 303, 2004, 1151.
    • (2004) Science. , vol.303 , pp. 1151
    • Pizzarello, S.1    Weber, A.L.2
  • 52
    • 84922623948 scopus 로고    scopus 로고
    • Long-term phenotypic evolution of bacteria
    • Plata, G., Henry, C.S., Vitkup, D., Long-term phenotypic evolution of bacteria. Nature 517 (2015), 369–372.
    • (2015) Nature , vol.517 , pp. 369-372
    • Plata, G.1    Henry, C.S.2    Vitkup, D.3
  • 53
    • 84886127886 scopus 로고    scopus 로고
    • Chemical Evolution and the Origin of Life
    • Springer
    • Rauchfuss, H., Chemical Evolution and the Origin of Life. 2008, Springer.
    • (2008)
    • Rauchfuss, H.1
  • 54
    • 33645211903 scopus 로고    scopus 로고
    • The effect of oxygen on biochemical networks and the evolution of complex life
    • Raymond, J., Segrè, D., The effect of oxygen on biochemical networks and the evolution of complex life. Science 311 (2006), 1764–1767.
    • (2006) Science , vol.311 , pp. 1764-1767
    • Raymond, J.1    Segrè, D.2
  • 55
    • 78349292586 scopus 로고    scopus 로고
    • Serpentinization as a source of energy at the origin of life
    • Russell, M.J., Hall, A.J., Martin, W., Serpentinization as a source of energy at the origin of life. Geobiology 8 (2010), 355–371.
    • (2010) Geobiology , vol.8 , pp. 355-371
    • Russell, M.J.1    Hall, A.J.2    Martin, W.3
  • 56
    • 33750079903 scopus 로고    scopus 로고
    • Phosphorus in prebiotic chemistry
    • discussion 1749
    • Schwartz, A.W., Phosphorus in prebiotic chemistry. Philos. Trans. R. Soc. Lond. B Biol. Sci. 361 (2006), 1743–1749 discussion 1749.
    • (2006) Philos. Trans. R. Soc. Lond. B Biol. Sci. , vol.361 , pp. 1743-1749
    • Schwartz, A.W.1
  • 58
    • 4444252543 scopus 로고    scopus 로고
    • Universality in intermediary metabolism
    • Smith, E., Morowitz, H.J., Universality in intermediary metabolism. Proc. Natl. Acad. Sci. USA 101 (2004), 13168–13173.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 13168-13173
    • Smith, E.1    Morowitz, H.J.2
  • 59
    • 85048961975 scopus 로고    scopus 로고
    • The Origin and Nature of Life on Earth: The Emergence of the Fourth Geosphere
    • Cambridge University Press Cambridge, United Kingdom
    • Smith, E., Morowitz, H.J., The Origin and Nature of Life on Earth: The Emergence of the Fourth Geosphere. 2016, Cambridge University Press, Cambridge, United Kingdom.
    • (2016)
    • Smith, E.1    Morowitz, H.J.2
  • 60
    • 84901837899 scopus 로고    scopus 로고
    • Biochemical fossils of the ancient transition from geoenergetics to bioenergetics in prokaryotic one carbon compound metabolism
    • Sousa, F.L., Martin, W.F., Biochemical fossils of the ancient transition from geoenergetics to bioenergetics in prokaryotic one carbon compound metabolism. Biochim. Biophys. Acta 1837 (2014), 964–981.
    • (2014) Biochim. Biophys. Acta , vol.1837 , pp. 964-981
    • Sousa, F.L.1    Martin, W.F.2
  • 62
    • 65349160931 scopus 로고    scopus 로고
    • The canonical network of autotrophic intermediary metabolism: minimal metabolome of a reductive chemoautotroph
    • Srinivasan, V., Morowitz, H.J., The canonical network of autotrophic intermediary metabolism: minimal metabolome of a reductive chemoautotroph. Biol. Bull. 216 (2009), 126–130.
    • (2009) Biol. Bull. , vol.216 , pp. 126-130
    • Srinivasan, V.1    Morowitz, H.J.2
  • 64
    • 0025023531 scopus 로고
    • Evolution of the first metabolic cycles
    • Wächtershäuser, G., Evolution of the first metabolic cycles. Proc. Natl. Acad. Sci. USA 87 (1990), 200–204.
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 200-204
    • Wächtershäuser, G.1
  • 65
    • 35948990789 scopus 로고    scopus 로고
    • Reductive evolution of architectural repertoires in proteomes and the birth of the tripartite world
    • Wang, M., Yafremava, L.S., Caetano-Anollés, D., Mittenthal, J.E., Caetano-Anollés, G., Reductive evolution of architectural repertoires in proteomes and the birth of the tripartite world. Genome Res. 17 (2007), 1572–1585.
    • (2007) Genome Res. , vol.17 , pp. 1572-1585
    • Wang, M.1    Yafremava, L.S.2    Caetano-Anollés, D.3    Mittenthal, J.E.4    Caetano-Anollés, G.5


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