-
1
-
-
76949122636
-
Glucose and gluconic acid oxidation of Pseudomonas saccharophila
-
Entner,N. and Doudoroff,M. (1952) Glucose and gluconic acid oxidation of Pseudomonas saccharophila. J. Biol. Chem., 196, 853-862.
-
(1952)
J. Biol. Chem.
, vol.196
, pp. 853-862
-
-
Entner, N.1
Doudoroff, M.2
-
3
-
-
0000528430
-
The path of carbon in photosynthesis
-
Calvin,M. and Benson,A.A. (1948) The path of carbon in photosynthesis. Science, 107, 476-480.
-
(1948)
Science
, vol.107
, pp. 476-480
-
-
Calvin, M.1
Benson, A.A.2
-
4
-
-
0000933482
-
Regulatory mechanisms in carbohydrate metabolism. III. Limiting factors in glycolysis of ascites tumor cells
-
Wu,R. and Racker,E. (1959) Regulatory mechanisms in carbohydrate metabolism. III. Limiting factors in glycolysis of ascites tumor cells. J. Biol. Chem., 234, 1029-1035.
-
(1959)
J. Biol. Chem.
, vol.234
, pp. 1029-1035
-
-
Wu, R.1
Racker, E.2
-
5
-
-
67649470562
-
Metabolic-network-driven analysis of bacterial ecological strategies
-
Freilich,S., Kreimer,A., Borenstein,E., Yosef,N., Sharan,R., Gophna,U. and Ruppin,E. (2009) Metabolic-network-driven analysis of bacterial ecological strategies. Genome Biol., 10, R61.
-
(2009)
Genome Biol.
, vol.10
-
-
Freilich, S.1
Kreimer, A.2
Borenstein, E.3
Yosef, N.4
Sharan, R.5
Gophna, U.6
Ruppin, E.7
-
6
-
-
77952717854
-
Design and analysis of synthetic carbon fixation pathways
-
Bar-Even,A. and Noor,E. (2010) Design and analysis of synthetic carbon fixation pathways. Proc. Natl Acad. Sci. USA, 107, 8889-8894.
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 8889-8894
-
-
Bar-Even, A.1
Noor, E.2
-
7
-
-
79959374585
-
Metabolic engineering of Escherichia coli for direct production of 1,4-butanediol
-
Yim,H., Haselbeck,R., Niu,W., Pujol-Baxley,C., Burgard,A., Boldt,J., Khandurina,J., Trawick,J.D., Osterhout,R.E., Stephen,R. et al. (2011) Metabolic engineering of Escherichia coli for direct production of 1,4-butanediol. Nat. Chem. Biol., 7, 445-452.
-
(2011)
Nat. Chem. Biol.
, vol.7
, pp. 445-452
-
-
Yim, H.1
Haselbeck, R.2
Niu, W.3
Pujol-Baxley, C.4
Burgard, A.5
Boldt, J.6
Khandurina, J.7
Trawick, J.D.8
Osterhout, R.E.9
Stephen, R.10
-
8
-
-
33645870422
-
Production of the antimalarial drug precursor artemisinic acid in engineered yeast
-
Ro,D.-K., Paradise,E.M., Ouellet,M., Fisher,K.J., Newman,K.L., Ndungu,J.M., Ho,K.A., Eachus,R.A., Ham,T.S., Kirby,J. et al. (2006) Production of the antimalarial drug precursor artemisinic acid in engineered yeast. Nature, 440, 940-943.
-
(2006)
Nature
, vol.440
, pp. 940-943
-
-
Ro, D.-K.1
Paradise, E.M.2
Ouellet, M.3
Fisher, K.J.4
Newman, K.L.5
Ndungu, J.M.6
Ho, K.A.7
Eachus, R.A.8
Ham, T.S.9
Kirby, J.10
-
9
-
-
0035125986
-
In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data
-
DOI 10.1038/84379
-
Edwards,J.S., Ibarra,R.U. and Palsson,B.O. (2001) In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data. Nat. Biotechnol., 19, 125-130. (Pubitemid 32144439)
-
(2001)
Nature Biotechnology
, vol.19
, Issue.2
, pp. 125-130
-
-
Edwards, J.S.1
Ibarra, R.U.2
Palsson, B.O.3
-
10
-
-
0027901886
-
Identification of localized and distributed bottlenecks in metabolic pathways
-
Mavrovouniotis,M.L. (1993) Identification of localized and distributed bottlenecks in metabolic pathways. Proc. Int. Conf. Intell. Syst. Mol. Biol., 1, 275-283.
-
(1993)
Proc. Int. Conf. Intell. Syst. Mol. Biol.
, vol.1
, pp. 275-283
-
-
Mavrovouniotis, M.L.1
-
12
-
-
0003422388
-
-
5th edn. W. H. Freeman, NY
-
Lodish,H., Berk,A., Zipursky,S.L., Matsudaira,P., Baltimore,D. and Darnell,J. (2003) Molecular Cell Biology, 5th edn. W. H. Freeman, NY.
-
(2003)
Molecular Cell Biology
-
-
Lodish, H.1
Berk, A.2
Zipursky, S.L.3
Matsudaira, P.4
Baltimore, D.5
Darnell, J.6
-
14
-
-
79955374298
-
Recommendations for terminology and databases for biochemical thermodynamics
-
Alberty,R.A., Cornish-Bowden,A., Goldberg,R.N., Hammes,G.G., Tipton,K. and Westerhoff,H.V. (2011) Recommendations for terminology and databases for biochemical thermodynamics. Biophys. Chem., 155, 89-103.
-
(2011)
Biophys. Chem.
, vol.155
, pp. 89-103
-
-
Alberty, R.A.1
Cornish-Bowden, A.2
Goldberg, R.N.3
Hammes, G.G.4
Tipton, K.5
Westerhoff, H.V.6
-
15
-
-
68049100110
-
Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli
-
Bennett,B.D., Kimball,E.H., Gao,M., Osterhout,R., Van Dien,S.J. and Rabinowitz,J.D. (2009) Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli. Nat. Chem. Biol., 5, 593-599.
-
(2009)
Nat. Chem. Biol.
, vol.5
, pp. 593-599
-
-
Bennett, B.D.1
Kimball, E.H.2
Gao, M.3
Osterhout, R.4
Van Dien, S.J.5
Rabinowitz, J.D.6
-
16
-
-
8844259501
-
Thermodynamics of enzyme-catalyzed reactions - A database for quantitative biochemistry
-
DOI 10.1093/bioinformatics/bth314
-
Goldberg,R.N., Tewari,Y.B. and Bhat,T.N. (2004) Thermodynamics of enzyme-catalyzed reactions-a database for quantitative biochemistry. Bioinformatics, 20, 2874-2877. (Pubitemid 39530187)
-
(2004)
Bioinformatics
, vol.20
, Issue.16
, pp. 2874-2877
-
-
Goldberg, R.N.1
Tewari, Y.B.2
Bhat, T.N.3
-
17
-
-
0033982936
-
KEGG: Kyoto Encyclopedia of Genes and Genomes
-
Kanehisa,M. and Goto,S. (2000) KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res., 28, 27-30. (Pubitemid 30047706)
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.1
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
18
-
-
33847797256
-
Thermodynamics-based metabolic flux analysis
-
DOI 10.1529/biophysj.106.093138
-
Henry,C. and Broadbelt,L. (2007) Thermodynamics-based metabolic flux analysis. Biochem. J., 92, 1792-1805. (Pubitemid 46393490)
-
(2007)
Biophysical Journal
, vol.92
, Issue.5
, pp. 1792-1805
-
-
Henry, C.S.1
Broadbelt, L.J.2
Hatzimanikatis, V.3
-
19
-
-
51049107514
-
Group contribution method for thermodynamic analysis of complex metabolic networks
-
Jankowski,M.D., Henry,C.S., Broadbelt,L.J. and Hatzimanikatis,V. (2008) Group contribution method for thermodynamic analysis of complex metabolic networks. Biophys. J., 95, 1487-1499.
-
(2008)
Biophys. J.
, vol.95
, pp. 1487-1499
-
-
Jankowski, M.D.1
Henry, C.S.2
Broadbelt, L.J.3
Hatzimanikatis, V.4
-
20
-
-
0025701406
-
Group contributions for estimating standard Gibbs energies of formation of biochemical compounds in aqueous solution
-
Mavrovouniotis,M.L. (1990) Group contributions for estimating standard Gibbs energies of formation of biochemical compounds in aqueous solution. Biotechnol. Bioeng., 36, 1070-1082.
-
(1990)
Biotechnol. Bioeng.
, vol.36
, pp. 1070-1082
-
-
Mavrovouniotis, M.L.1
-
21
-
-
34347332311
-
A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information
-
Feist,A.M., Henry,C.S., Reed,J.L., Krummenacker,M., Joyce,A.R., Karp,P.D., Broadbelt,L.J., Hatzimanikatis,V. and Palsson,B.Ø. (2007) A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information. Mol. Syst. Biol., 3, 1-18.
-
(2007)
Mol. Syst. Biol.
, vol.3
, pp. 1-18
-
-
Feist, A.M.1
Henry, C.S.2
Reed, J.L.3
Krummenacker, M.4
Joyce, A.R.5
Karp, P.D.6
Broadbelt, L.J.7
Hatzimanikatis, V.8
Palsson, B.Ø.9
-
22
-
-
0036165418
-
BRENDA: A resource for enzyme data and metabolic information
-
DOI 10.1016/S0968-0004(01)02027-8, PII S0968000401020278
-
Schomburg,I., Chang,A., Hofmann,O., Ebeling,C., Ehrentreich,F. and Schomburg,D. (2002) BRENDA: a resource for enzyme data and metabolic information. Trends Biochem. Sci., 27, 54-56. (Pubitemid 34131626)
-
(2002)
Trends in Biochemical Sciences
, vol.27
, Issue.1
, pp. 54-56
-
-
Schomburg, I.1
Chang, A.2
Hofmann, O.3
Ebeling, C.4
Ehrentreich, F.5
Schomburg, D.6
-
23
-
-
0026441554
-
Gibbs free energy of formation of halogenated aromatic compounds and their potential role as electron acceptors in anaerobic environments
-
Dolfing,J. and Harrison,B.K. (1992) Gibbs free energy of formation of halogenated aromatic compounds and their potential role as electron acceptors in anaerobic environments. Environ. Sci. Technol., 26, 2213-2218.
-
(1992)
Environ. Sci. Technol.
, vol.26
, pp. 2213-2218
-
-
Dolfing, J.1
Harrison, B.K.2
-
24
-
-
0017343370
-
Energy conservation in chemotrophic anaerobic bacteria
-
Thauer,R.K., Jungermann,K. and Decker,K. (1977) Energy conservation in chemotrophic anaerobic bacteria. Bacteriol. Rev., 41, 100-180. (Pubitemid 8082287)
-
(1977)
Bacteriological Reviews
, vol.41
, Issue.1
, pp. 100-180
-
-
Thauer, R.K.1
Jungermann, K.2
Decker, K.3
-
25
-
-
0036001069
-
Metabolic modelling of microbes: The flux-balance approach
-
DOI 10.1046/j.1462-2920.2002.00282.x
-
Edwards,J.S., Covert,M. and Palsson,B. (2002) Metabolic modelling of microbes: the flux-balance approach. Environ. Microbiol., 4, 133-140. (Pubitemid 34544038)
-
(2002)
Environmental Microbiology
, vol.4
, Issue.3
, pp. 133-140
-
-
Edwards, J.S.1
Covert, M.2
Palsson, B.3
-
26
-
-
3843128481
-
Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model
-
DOI 10.1101/gr.2250904
-
Duarte,N.C., Herrgård,M.J. and Palsson,B.Ø. (2004) Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model. Genome Res., 14, 1298-1309. (Pubitemid 39036129)
-
(2004)
Genome Research
, vol.14
, Issue.7
, pp. 1298-1309
-
-
Duarte, N.C.1
Herrgard, M.J.2
Palsson, B.O.3
-
27
-
-
70350676551
-
A genome-scale metabolic model of Arabidopsis and some of its properties
-
Poolman,M.G., Miguet,L., Sweetlove,L.J. and Fell,D.A. (2009) A genome-scale metabolic model of Arabidopsis and some of its properties. Plant Physiol., 151, 1570-1581.
-
(2009)
Plant Physiol.
, vol.151
, pp. 1570-1581
-
-
Poolman, M.G.1
Miguet, L.2
Sweetlove, L.J.3
Fell, D.A.4
-
28
-
-
0022888115
-
Determination of bacterial cell volume with the Coulter Counter
-
Kubitschek,H.E. and Friske,J.A. (1986) Determination of bacterial cell volume with the Coulter Counter. J. Bacteriol., 168, 1466-1467. (Pubitemid 17226844)
-
(1986)
Journal of Bacteriology
, vol.168
, Issue.3
, pp. 1466-1467
-
-
Kubitschek, H.E.1
Friske, J.A.2
-
29
-
-
0027412292
-
ATP versus pyrophosphate: Glycolysis revisited in parasitic protists
-
Mertens,E. (1993) ATP versus pyrophosphate: glycolysis revisited in parasitic protists. Parasitol. Today, 9, 122-126.
-
(1993)
Parasitol. Today
, vol.9
, pp. 122-126
-
-
Mertens, E.1
-
30
-
-
30944435242
-
Pyruvate-phosphate dikinase of oxymonads and parabasalia and the evolution of pyrophosphate-dependent glycolysis in anaerobic eukaryotes
-
DOI 10.1128/EC.5.1.148-154.2006
-
Slamovits,C.H. and Keeling,P.J. (2006) Pyruvate-phosphate dikinase of oxymonads and parabasalia and the evolution of pyrophosphate-dependent glycolysis in anaerobic eukaryotes. Eukaryotic Cell, 5, 148-154. (Pubitemid 43113460)
-
(2006)
Eukaryotic Cell
, vol.5
, Issue.1
, pp. 148-154
-
-
Slamovits, C.H.1
Keeling, P.J.2
-
31
-
-
33846647495
-
Bringing metabolic networks to life: Integration of kinetic, metabolic, and proteomic data
-
Liebermeister,W. and Klipp,E. (2006) Bringing metabolic networks to life: integration of kinetic, metabolic, and proteomic data. Theor. Biol. Med. Modell., 3, 42.
-
(2006)
Theor. Biol. Med. Modell.
, vol.3
, pp. 42
-
-
Liebermeister, W.1
Klipp, E.2
|