메뉴 건너뛰기




Volumn 517, Issue 7534, 2015, Pages 369-372

Long-term phenotypic evolution of bacteria

Author keywords

[No Author keywords available]

Indexed keywords

ADAPTATION; BACTERIUM; EVOLUTIONARY BIOLOGY; NATURAL SELECTION; PHENOTYPIC PLASTICITY; PROTEIN;

EID: 84922623948     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature13827     Document Type: Article
Times cited : (63)

References (30)
  • 2
    • 0014421064 scopus 로고
    • Evolutionary rate at the molecular level
    • Kimura, M. Evolutionary rate at the molecular level. Nature 217, 624-626 (1968).
    • (1968) Nature , vol.217 , pp. 624-626
    • Kimura, M.1
  • 5
    • 73149122136 scopus 로고    scopus 로고
    • Applications of genome-scale metabolic reconstructions
    • Oberhardt, M. A., Palsson, B. O. & Papin, J. A. Applications of genome-scale metabolic reconstructions. Mol. Syst. Biol. 5, 320 (2009).
    • (2009) Mol. Syst. Biol. , vol.5 , pp. 320
    • Oberhardt, M.A.1    Palsson, B.O.2    Papin, J.A.3
  • 6
    • 84864795465 scopus 로고    scopus 로고
    • Recent advances in reconstruction and applications of genome-scale metabolic models
    • Kim, T. Y., Sohn, S. B., Kim, Y. B., Kim, W. J. & Lee, S. Y. Recent advances in reconstruction and applications of genome-scale metabolic models. Curr. Opin. Biotechnol. 24, 617-623 (2011).
    • (2011) Curr. Opin. Biotechnol. , vol.24 , pp. 617-623
    • Kim, T.Y.1    Sohn, S.B.2    Kim, Y.B.3    Kim, W.J.4    Lee, S.Y.5
  • 7
    • 77956696072 scopus 로고    scopus 로고
    • High-throughput generation, optimization and analysis of genome-scale metabolic models
    • Henry, C. S. et al. High-throughput generation, optimization and analysis of genome-scale metabolic models. Nature Biotechnol. 28, 977-982 (2010).
    • (2010) Nature Biotechnol. , vol.28 , pp. 977-982
    • Henry, C.S.1
  • 8
    • 57649123534 scopus 로고    scopus 로고
    • Global phenotypic characterization of bacteria. FEMSMicrobiol
    • Bochner, B. R. Global phenotypic characterization of bacteria. FEMSMicrobiol. Rev. 33, 191-205 (2009).
    • (2009) Rev. , vol.33 , pp. 191-205
    • Bochner, B.R.1
  • 10
    • 67650581630 scopus 로고    scopus 로고
    • The conservation and evolutionary modularity of metabolism
    • Peregrin-Alvarez, J. M., Sanford, C. & Parkinson, J. The conservation and evolutionary modularity of metabolism. Genome Biol. 10, R63 (2009).
    • (2009) Genome Biol. , vol.10 , pp. R63
    • Peregrin-Alvarez, J.M.1    Sanford, C.2    Parkinson, J.3
  • 11
    • 0027254254 scopus 로고
    • A molecular clock in endosymbiotic bacteria is calibrated using the insect hosts
    • Moran, N. A., Munson, M. A., Baumann, P. & Ishikawa, H. A molecular clock in endosymbiotic bacteria is calibrated using the insect hosts. Proc. R. Soc. Lond. B 253, 167-171 (1993).
    • (1993) Proc. R. Soc. Lond. B , vol.253 , pp. 167-171
    • Moran, N.A.1    Munson, M.A.2    Baumann, P.3    Ishikawa, H.4
  • 12
    • 79959326367 scopus 로고    scopus 로고
    • The decoupling between genetic structure and metabolic phenotypes in Escherichia coli leads to continuous phenotypic diversity
    • Sabarly, V. et al. The decoupling between genetic structure and metabolic phenotypes in Escherichia coli leads to continuous phenotypic diversity. J. Evol. Biol. 24, 1559-1571 (2011).
    • (2011) J. Evol. Biol. , vol.24 , pp. 1559-1571
    • Sabarly, V.1
  • 13
    • 82155168575 scopus 로고    scopus 로고
    • Closely related Campylobacter jejuni strains from different sources reveal a generalist rather than a specialist lifestyle
    • Gripp, E. et al. Closely related Campylobacter jejuni strains from different sources reveal a generalist rather than a specialist lifestyle.BMC Genomics 12, 584 (2011).
    • (2011) BMC Genomics , vol.12 , pp. 584
    • Gripp, E.1
  • 14
    • 84890290025 scopus 로고    scopus 로고
    • Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments
    • Monk, J. M. et al. Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments. Proc. Natl Acad. Sci. USA 110, 20338-20343 (2013).
    • (2013) Proc. Natl Acad. Sci. USA , vol.110 , pp. 20338-20343
    • Monk, J.M.1
  • 15
    • 77956533047 scopus 로고    scopus 로고
    • Hierarchical evolution of the bacterial sporulation network
    • de Hoon, M. J., Eichenberger, P. & Vitkup, D. Hierarchical evolution of the bacterial sporulation network. Curr. Biol. 20, R735-R745 (2010).
    • (2010) Curr. Biol. , vol.20 , pp. R735-R745
    • De Hoon, M.J.1    Eichenberger, P.2    Vitkup, D.3
  • 17
    • 55949124306 scopus 로고    scopus 로고
    • Significant conservation of synthetic lethal genetic interaction networks between distantly related eukaryotes
    • Dixon, S. J. et al. Significant conservation of synthetic lethal genetic interaction networks between distantly related eukaryotes. Proc. Natl Acad. Sci. USA 105, 16653-16658 (2008).
    • (2008) Proc. Natl Acad. Sci. USA , vol.105 , pp. 16653-16658
    • Dixon, S.J.1
  • 18
    • 41349102391 scopus 로고    scopus 로고
    • Evolutionary plasticity of genetic interaction networks
    • Tischler, J., Lehner, B. & Fraser, A. G. Evolutionary plasticity of genetic interaction networks. Nature Genet. 40, 390-391 (2008).
    • (2008) Nature Genet. , vol.40 , pp. 390-391
    • Tischler, J.1    Lehner, B.2    Fraser, A.G.3
  • 19
    • 79959687662 scopus 로고    scopus 로고
    • An integrated approach to characterize genetic interaction networks in yeast metabolism
    • Szappanos, B. et al. An integrated approach to characterize genetic interaction networks in yeast metabolism. Nature Genet. 43, 656-662 (2011).
    • (2011) Nature Genet. , vol.43 , pp. 656-662
    • Szappanos, B.1
  • 20
    • 84881477852 scopus 로고    scopus 로고
    • A latent capacity for evolutionary innovation through exaptation in metabolic systems
    • Barve, A. & Wagner, A. A latent capacity for evolutionary innovation through exaptation in metabolic systems. Nature 500, 203-206 (2013).
    • (2013) Nature , vol.500 , pp. 203-206
    • Barve, A.1    Wagner, A.2
  • 21
    • 84870256513 scopus 로고    scopus 로고
    • Global probabilistic annotation of metabolic networks enables enzymediscovery
    • Plata, G., Fuhrer, T., Hsiao, T. L., Sauer, U. & Vitkup, D. Global probabilistic annotation of metabolic networks enables enzymediscovery. Nature Chem. Biol. 8, 848-854 (2012).
    • (2012) Nature Chem. Biol. , vol.8 , pp. 848-854
    • Plata, G.1    Fuhrer, T.2    Hsiao, T.L.3    Sauer, U.4    Vitkup, D.5
  • 23
    • 80054078476 scopus 로고    scopus 로고
    • Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
    • Sievers, F. et al. Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. Mol. Syst. Biol. 7, 539 (2011).
    • (2011) Mol. Syst. Biol. , vol.7 , pp. 539
    • Sievers, F.1
  • 24
    • 84873739311 scopus 로고    scopus 로고
    • The SILVA ribosomal RNA gene database project: Improved data processing and web-based tools
    • Quast, C. et al. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res. 41, D590-D596 (2013).
    • (2013) Nucleic Acids Res. , vol.41 , pp. D590-D596
    • Quast, C.1
  • 26
    • 58149200954 scopus 로고    scopus 로고
    • Database resources of the national center for biotechnology information
    • Sayers, E. W. et al. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 37, D5-D15 (2009).
    • (2009) Nucleic Acids Res. , vol.37 , pp. D5-D15
    • Sayers, E.W.1
  • 27
    • 34347258175 scopus 로고    scopus 로고
    • Quantitative prediction of cellular metabolism with constraint-based models: The COBRA Toolbox
    • Becker, S. A. et al. Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox. Nature Protocols 2, 727-738 (2007).
    • (2007) Nature Protocols , vol.2 , pp. 727-738
    • Becker, S.A.1
  • 28
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • Altschul, S. F. et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402 (1997).
    • (1997) Nucleic Acids Res. , vol.25 , pp. 3389-3402
    • Altschul, S.F.1
  • 29
    • 31044439550 scopus 로고    scopus 로고
    • Essential genes of a minimal bacterium
    • Glass, J. I. et al. Essential genes of a minimal bacterium. Proc. Natl Acad. Sci. USA 103, 425-430 (2006).
    • (2006) Proc. Natl Acad. Sci. USA , vol.103 , pp. 425-430
    • Glass, J.I.1
  • 30
    • 0033982936 scopus 로고    scopus 로고
    • Kegg:kyoto encyclopedia of genes and genomes
    • Kanehisa, M. & Goto, S. KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res. 28, 27-30 (2000).
    • (2000) Nucleic Acids Res. , vol.28 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.