-
1
-
-
0013092230
-
-
(eds Bryson, V.& Vogel, H.) Academic
-
Zuckerkandl, E.& Pauling, L. in Evolving Genes and Proteins (eds Bryson, V.& Vogel, H.) 97-166 (Academic, 1965).
-
(1965)
Evolving Genes and Proteins
, pp. 97-166
-
-
Zuckerkandl, E.1
Pauling, L.2
-
2
-
-
0014421064
-
Evolutionary rate at the molecular level
-
Kimura, M. Evolutionary rate at the molecular level. Nature 217, 624-626 (1968).
-
(1968)
Nature
, vol.217
, pp. 624-626
-
-
Kimura, M.1
-
4
-
-
77749320898
-
What is flux balanceanalysis
-
Orth, J. D., Thiele, I.&Palsson, B. O.What is flux balanceanalysis?Nature Biotechnol. 28, 245-248 (2010).
-
(2010)
Nature Biotechnol
, vol.28
, pp. 245-248
-
-
Orth, J.D.1
Thiele, I.2
Palsson, B.O.3
-
5
-
-
73149122136
-
Applications of genome-scale metabolic reconstructions
-
Oberhardt, M. A., Palsson, B. O. & Papin, J. A. Applications of genome-scale metabolic reconstructions. Mol. Syst. Biol. 5, 320 (2009).
-
(2009)
Mol. Syst. Biol.
, vol.5
, pp. 320
-
-
Oberhardt, M.A.1
Palsson, B.O.2
Papin, J.A.3
-
6
-
-
84864795465
-
Recent advances in reconstruction and applications of genome-scale metabolic models
-
Kim, T. Y., Sohn, S. B., Kim, Y. B., Kim, W. J. & Lee, S. Y. Recent advances in reconstruction and applications of genome-scale metabolic models. Curr. Opin. Biotechnol. 24, 617-623 (2011).
-
(2011)
Curr. Opin. Biotechnol.
, vol.24
, pp. 617-623
-
-
Kim, T.Y.1
Sohn, S.B.2
Kim, Y.B.3
Kim, W.J.4
Lee, S.Y.5
-
7
-
-
77956696072
-
High-throughput generation, optimization and analysis of genome-scale metabolic models
-
Henry, C. S. et al. High-throughput generation, optimization and analysis of genome-scale metabolic models. Nature Biotechnol. 28, 977-982 (2010).
-
(2010)
Nature Biotechnol.
, vol.28
, pp. 977-982
-
-
Henry, C.S.1
-
8
-
-
57649123534
-
Global phenotypic characterization of bacteria. FEMSMicrobiol
-
Bochner, B. R. Global phenotypic characterization of bacteria. FEMSMicrobiol. Rev. 33, 191-205 (2009).
-
(2009)
Rev.
, vol.33
, pp. 191-205
-
-
Bochner, B.R.1
-
9
-
-
84860487758
-
Multidimensional optimality of microbial metabolism
-
Schuetz, R., Zamboni, N., Zampieri, M., Heinemann, M. & Sauer, U. Multidimensional optimality of microbial metabolism. Science 336, 601-604 (2012).
-
(2012)
Science
, vol.336
, pp. 601-604
-
-
Schuetz, R.1
Zamboni, N.2
Zampieri, M.3
Heinemann, M.4
Sauer, U.5
-
10
-
-
67650581630
-
The conservation and evolutionary modularity of metabolism
-
Peregrin-Alvarez, J. M., Sanford, C. & Parkinson, J. The conservation and evolutionary modularity of metabolism. Genome Biol. 10, R63 (2009).
-
(2009)
Genome Biol.
, vol.10
, pp. R63
-
-
Peregrin-Alvarez, J.M.1
Sanford, C.2
Parkinson, J.3
-
11
-
-
0027254254
-
A molecular clock in endosymbiotic bacteria is calibrated using the insect hosts
-
Moran, N. A., Munson, M. A., Baumann, P. & Ishikawa, H. A molecular clock in endosymbiotic bacteria is calibrated using the insect hosts. Proc. R. Soc. Lond. B 253, 167-171 (1993).
-
(1993)
Proc. R. Soc. Lond. B
, vol.253
, pp. 167-171
-
-
Moran, N.A.1
Munson, M.A.2
Baumann, P.3
Ishikawa, H.4
-
12
-
-
79959326367
-
The decoupling between genetic structure and metabolic phenotypes in Escherichia coli leads to continuous phenotypic diversity
-
Sabarly, V. et al. The decoupling between genetic structure and metabolic phenotypes in Escherichia coli leads to continuous phenotypic diversity. J. Evol. Biol. 24, 1559-1571 (2011).
-
(2011)
J. Evol. Biol.
, vol.24
, pp. 1559-1571
-
-
Sabarly, V.1
-
13
-
-
82155168575
-
Closely related Campylobacter jejuni strains from different sources reveal a generalist rather than a specialist lifestyle
-
Gripp, E. et al. Closely related Campylobacter jejuni strains from different sources reveal a generalist rather than a specialist lifestyle.BMC Genomics 12, 584 (2011).
-
(2011)
BMC Genomics
, vol.12
, pp. 584
-
-
Gripp, E.1
-
14
-
-
84890290025
-
Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments
-
Monk, J. M. et al. Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments. Proc. Natl Acad. Sci. USA 110, 20338-20343 (2013).
-
(2013)
Proc. Natl Acad. Sci. USA
, vol.110
, pp. 20338-20343
-
-
Monk, J.M.1
-
15
-
-
77956533047
-
Hierarchical evolution of the bacterial sporulation network
-
de Hoon, M. J., Eichenberger, P. & Vitkup, D. Hierarchical evolution of the bacterial sporulation network. Curr. Biol. 20, R735-R745 (2010).
-
(2010)
Curr. Biol.
, vol.20
, pp. R735-R745
-
-
De Hoon, M.J.1
Eichenberger, P.2
Vitkup, D.3
-
17
-
-
55949124306
-
Significant conservation of synthetic lethal genetic interaction networks between distantly related eukaryotes
-
Dixon, S. J. et al. Significant conservation of synthetic lethal genetic interaction networks between distantly related eukaryotes. Proc. Natl Acad. Sci. USA 105, 16653-16658 (2008).
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 16653-16658
-
-
Dixon, S.J.1
-
18
-
-
41349102391
-
Evolutionary plasticity of genetic interaction networks
-
Tischler, J., Lehner, B. & Fraser, A. G. Evolutionary plasticity of genetic interaction networks. Nature Genet. 40, 390-391 (2008).
-
(2008)
Nature Genet.
, vol.40
, pp. 390-391
-
-
Tischler, J.1
Lehner, B.2
Fraser, A.G.3
-
19
-
-
79959687662
-
An integrated approach to characterize genetic interaction networks in yeast metabolism
-
Szappanos, B. et al. An integrated approach to characterize genetic interaction networks in yeast metabolism. Nature Genet. 43, 656-662 (2011).
-
(2011)
Nature Genet.
, vol.43
, pp. 656-662
-
-
Szappanos, B.1
-
20
-
-
84881477852
-
A latent capacity for evolutionary innovation through exaptation in metabolic systems
-
Barve, A. & Wagner, A. A latent capacity for evolutionary innovation through exaptation in metabolic systems. Nature 500, 203-206 (2013).
-
(2013)
Nature
, vol.500
, pp. 203-206
-
-
Barve, A.1
Wagner, A.2
-
21
-
-
84870256513
-
Global probabilistic annotation of metabolic networks enables enzymediscovery
-
Plata, G., Fuhrer, T., Hsiao, T. L., Sauer, U. & Vitkup, D. Global probabilistic annotation of metabolic networks enables enzymediscovery. Nature Chem. Biol. 8, 848-854 (2012).
-
(2012)
Nature Chem. Biol.
, vol.8
, pp. 848-854
-
-
Plata, G.1
Fuhrer, T.2
Hsiao, T.L.3
Sauer, U.4
Vitkup, D.5
-
22
-
-
58149185141
-
-
Benson, D. A., Karsch-Mizrachi, I., Lipman, D. J., Ostell, J.& Sayers, E. W. GenBank. Nucleic Acids Res. 37, D26-D31 (2009).
-
(2009)
GenBank Nucleic Acids Res.
, vol.37
, pp. D26-D31
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
Sayers, E.W.5
-
23
-
-
80054078476
-
Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
-
Sievers, F. et al. Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. Mol. Syst. Biol. 7, 539 (2011).
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 539
-
-
Sievers, F.1
-
24
-
-
84873739311
-
The SILVA ribosomal RNA gene database project: Improved data processing and web-based tools
-
Quast, C. et al. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res. 41, D590-D596 (2013).
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D590-D596
-
-
Quast, C.1
-
26
-
-
58149200954
-
Database resources of the national center for biotechnology information
-
Sayers, E. W. et al. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 37, D5-D15 (2009).
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. D5-D15
-
-
Sayers, E.W.1
-
27
-
-
34347258175
-
Quantitative prediction of cellular metabolism with constraint-based models: The COBRA Toolbox
-
Becker, S. A. et al. Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox. Nature Protocols 2, 727-738 (2007).
-
(2007)
Nature Protocols
, vol.2
, pp. 727-738
-
-
Becker, S.A.1
-
28
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F. et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402 (1997).
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
-
29
-
-
31044439550
-
Essential genes of a minimal bacterium
-
Glass, J. I. et al. Essential genes of a minimal bacterium. Proc. Natl Acad. Sci. USA 103, 425-430 (2006).
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 425-430
-
-
Glass, J.I.1
-
30
-
-
0033982936
-
Kegg:kyoto encyclopedia of genes and genomes
-
Kanehisa, M. & Goto, S. KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res. 28, 27-30 (2000).
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
|