-
1
-
-
84961392561
-
Tissue-specific designs of stem cell hierarchies
-
Visvader, J. E. & Clevers, H. Tissue-specific designs of stem cell hierarchies. Nat. Cell Biol. 18, 349-355 (2016).
-
(2016)
Nat. Cell Biol.
, vol.18
, pp. 349-355
-
-
Visvader, J.E.1
Clevers, H.2
-
2
-
-
30144432901
-
Purification and unique properties of mammary epithelial stem cells
-
Stingl, J. et al. Purification and unique properties of mammary epithelial stem cells. Nature 439, 993-997 (2006).
-
(2006)
Nature
, vol.439
, pp. 993-997
-
-
Stingl, J.1
-
3
-
-
84878304558
-
Lgr proteins in epithelial stem cell biology
-
Barker, N., Tan, S. & Clevers, H. Lgr proteins in epithelial stem cell biology. Development 140, 2484-2494 (2013).
-
(2013)
Development
, vol.140
, pp. 2484-2494
-
-
Barker, N.1
Tan, S.2
Clevers, H.3
-
4
-
-
84873131410
-
Lgr5-expressing cells are sufficient and necessary for postnatal mammary gland organogenesis
-
Plaks, V. et al. Lgr5-expressing cells are sufficient and necessary for postnatal mammary gland organogenesis. Cell Rep. 3, 70-78 (2013).
-
(2013)
Cell Rep.
, vol.3
, pp. 70-78
-
-
Plaks, V.1
-
5
-
-
84922129231
-
Identification of multipotent mammary stem cells by protein C receptor expression
-
Wang, D. et al. Identification of multipotent mammary stem cells by protein C receptor expression. Nature 517, 81-84 (2015).
-
(2015)
Nature
, vol.517
, pp. 81-84
-
-
Wang, D.1
-
6
-
-
84867575877
-
Developmental stage-specific contribution of LGR5 (C) cells to basal and luminal epithelial lineages in the postnatal mammary gland
-
De Visser, K. E. et al. Developmental stage-specific contribution of LGR5 (C) cells to basal and luminal epithelial lineages in the postnatal mammary gland. J. Pathol. 228, 300-309 (2012).
-
(2012)
J. Pathol.
, vol.228
, pp. 300-309
-
-
De Visser, K.E.1
-
7
-
-
84894267586
-
In situ identification of bipotent stem cells in the mammary gland
-
Rios, A. C., Fu, N. Y., Lindeman, G. J. & Visvader, J. E. In situ identification of bipotent stem cells in the mammary gland. Nature 506, 322-327 (2014).
-
(2014)
Nature
, vol.506
, pp. 322-327
-
-
Rios, A.C.1
Fu, N.Y.2
Lindeman, G.J.3
Visvader, J.E.4
-
8
-
-
80855130470
-
Distinct stem cells contribute to mammary gland development and maintenance
-
Van Keymeulen, A. et al. Distinct stem cells contribute to mammary gland development and maintenance. Nature 479, 189-193 (2011).
-
(2011)
Nature
, vol.479
, pp. 189-193
-
-
Van Keymeulen, A.1
-
9
-
-
70349123829
-
The tumor suppressor p53 regulates polarity of self-renewing divisions in mammary stem cells
-
Cicalese, A. et al. The tumor suppressor p53 regulates polarity of self-renewing divisions in mammary stem cells. Cell 138, 1083-1095 (2009).
-
(2009)
Cell
, vol.138
, pp. 1083-1095
-
-
Cicalese, A.1
-
10
-
-
84876920428
-
Molecular hierarchy of mammary differentiation yields refined markers of mammary stem cells
-
Dos Santos, C. O. et al. Molecular hierarchy of mammary differentiation yields refined markers of mammary stem cells. Proc. Natl Acad. Sci. USA 110, 7123-7130 (2013).
-
(2013)
Proc. Natl Acad. Sci. USA
, vol.110
, pp. 7123-7130
-
-
Dos Santos, C.O.1
-
11
-
-
14844343185
-
Label-retaining epithelial cells in mouse mammary gland divide asymmetrically and retain their template DNA strands
-
Smith, G. H. Label-retaining epithelial cells in mouse mammary gland divide asymmetrically and retain their template DNA strands. Development 132, 681-687 (2005).
-
(2005)
Development
, vol.132
, pp. 681-687
-
-
Smith, G.H.1
-
12
-
-
84924242267
-
Embryonic cells contribute directly to the quiescent stem cell population in the adult mouse mammary gland
-
Boras-Granic, K., Dann, P. & Wysolmerski, J. J. Embryonic cells contribute directly to the quiescent stem cell population in the adult mouse mammary gland. Breast Cancer Res. 16, 487 (2014).
-
(2014)
Breast Cancer Res.
, vol.16
, pp. 487
-
-
Boras-Granic, K.1
Dann, P.2
Wysolmerski, J.J.3
-
13
-
-
35548974423
-
Identification of stem cells in small intestine and colon by marker gene Lgr5
-
Barker, N. et al. Identification of stem cells in small intestine and colon by marker gene Lgr5. Nature 449, 1003-1007 (2007).
-
(2007)
Nature
, vol.449
, pp. 1003-1007
-
-
Barker, N.1
-
14
-
-
84992058698
-
Establishing estrogen-responsive mouse mammary organoids from single Lgr5C cells
-
Zhang, L. et al. Establishing estrogen-responsive mouse mammary organoids from single Lgr5C cells. Cell. Signal. 29, 41-51 (2016).
-
(2016)
Cell. Signal.
, vol.29
, pp. 41-51
-
-
Zhang, L.1
-
15
-
-
77957327732
-
E-cadherin/p120-catenin and tetraspanin Co-029 cooperate for cell motility control in human colon carcinoma
-
Greco, C. et al. E-cadherin/p120-catenin and tetraspanin Co-029 cooperate for cell motility control in human colon carcinoma. Cancer Res. 70, 7674-7683 (2010).
-
(2010)
Cancer Res.
, vol.70
, pp. 7674-7683
-
-
Greco, C.1
-
16
-
-
28444441957
-
Tetraspanin functions and associated microdomains
-
Hemler, M. E. Tetraspanin functions and associated microdomains. Nat. Rev. Mol. Cell Biol. 6, 801-811 (2005).
-
(2005)
Nat. Rev. Mol. Cell Biol.
, vol.6
, pp. 801-811
-
-
Hemler, M.E.1
-
17
-
-
57749169272
-
Tetraspanins: Push and pull in suppressing and promoting metastasis
-
Zoller, M. Tetraspanins: push and pull in suppressing and promoting metastasis. Nat. Rev. Cancer 9, 40-55 (2009).
-
(2009)
Nat. Rev. Cancer
, vol.9
, pp. 40-55
-
-
Zoller, M.1
-
18
-
-
84946104579
-
Stem and progenitor cell division kinetics during postnatal mouse mammary gland development
-
Giraddi, R. R. et al. Stem and progenitor cell division kinetics during postnatal mouse mammary gland development. Nat. Commun. 6, 8487 (2015).
-
(2015)
Nat. Commun.
, vol.6
, pp. 8487
-
-
Giraddi, R.R.1
-
20
-
-
84878240136
-
Molecular regulation of stem cell quiescence
-
Cheung, T. H. & Rando, T. A. Molecular regulation of stem cell quiescence. Nat. Rev. Mol. Cell Biol. 14, 329-340 (2013).
-
(2013)
Nat. Rev. Mol. Cell Biol.
, vol.14
, pp. 329-340
-
-
Cheung, T.H.1
Rando, T.A.2
-
21
-
-
77956628008
-
Wnt proteins are self-renewal factors for mammary stem cells and promote their long-term expansion in culture
-
Zeng, Y. A. & Nusse, R. Wnt proteins are self-renewal factors for mammary stem cells and promote their long-term expansion in culture. Cell Stem Cell 6, 568-577 (2010).
-
(2010)
Cell Stem Cell
, vol.6
, pp. 568-577
-
-
Zeng, Y.A.1
Nusse, R.2
-
22
-
-
35348875982
-
Molecular signature of quiescent satellite cells in adult skeletal muscle
-
Fukada, S. et al. Molecular signature of quiescent satellite cells in adult skeletal muscle. Stem Cells 25, 2448-2459 (2007).
-
(2007)
Stem Cells
, vol.25
, pp. 2448-2459
-
-
Fukada, S.1
-
23
-
-
84892440367
-
Chromatin modifications as determinants of muscle stem cell quiescence and chronological aging
-
Liu, L. et al. Chromatin modifications as determinants of muscle stem cell quiescence and chronological aging. Cell Rep. 4, 189-204 (2013).
-
(2013)
Cell Rep.
, vol.4
, pp. 189-204
-
-
Liu, L.1
-
24
-
-
35848943273
-
Hematopoietic fingerprints: An expression database of stem cells and their progeny
-
Chambers, S. M. et al. Hematopoietic fingerprints: an expression database of stem cells and their progeny. Cell Stem Cell 1, 578-591 (2007).
-
(2007)
Cell Stem Cell
, vol.1
, pp. 578-591
-
-
Chambers, S.M.1
-
25
-
-
80052298366
-
Genome-wide maps of histone modifications unwind in vivo chromatin states of the hair follicle lineage
-
Lien, W. H. et al. Genome-wide maps of histone modifications unwind in vivo chromatin states of the hair follicle lineage. Cell Stem Cell 9, 219-232 (2011).
-
(2011)
Cell Stem Cell
, vol.9
, pp. 219-232
-
-
Lien, W.H.1
-
26
-
-
84922742836
-
BMP signaling and its pSMAD1/5 target genes differentially regulate hair follicle stem cell lineages
-
Genander, M. et al. BMP signaling and its pSMAD1/5 target genes differentially regulate hair follicle stem cell lineages. Cell Stem Cell 15, 619-633 (2014).
-
(2014)
Cell Stem Cell
, vol.15
, pp. 619-633
-
-
Genander, M.1
-
27
-
-
6944224156
-
BMP signaling inhibits intestinal stem cell self-renewal through suppression of Wnt-β-catenin signaling
-
He, X. C. et al. BMP signaling inhibits intestinal stem cell self-renewal through suppression of Wnt-β-catenin signaling. Nat. Genet. 36, 1117-1121 (2004).
-
(2004)
Nat. Genet.
, vol.36
, pp. 1117-1121
-
-
He, X.C.1
-
28
-
-
78049308800
-
Phenotypic and molecular characterization of the claudin-low intrinsic subtype of breast cancer
-
Prat, A. et al. Phenotypic and molecular characterization of the claudin-low intrinsic subtype of breast cancer. Breast Cancer Res. 12, R68 (2010).
-
(2010)
Breast Cancer Res.
, vol.12
, pp. R68
-
-
Prat, A.1
-
29
-
-
68349130357
-
Aberrant luminal progenitors as the candidate target population for basal tumor development in BRCA1 mutation carriers
-
Lim, E. et al. Aberrant luminal progenitors as the candidate target population for basal tumor development in BRCA1 mutation carriers. Nat. Med. 15, 907-913 (2009).
-
(2009)
Nat. Med.
, vol.15
, pp. 907-913
-
-
Lim, E.1
-
30
-
-
84874231902
-
Global changes in the mammary epigenome are induced by hormonal cues and coordinated by Ezh2
-
Pal, B. et al. Global changes in the mammary epigenome are induced by hormonal cues and coordinated by Ezh2. Cell Rep. 3, 411-426 (2013).
-
(2013)
Cell Rep.
, vol.3
, pp. 411-426
-
-
Pal, B.1
-
31
-
-
77955889132
-
ROAST: Rotation gene set tests for complex microarray experiments
-
Wu, D. et al. ROAST: rotation gene set tests for complex microarray experiments. Bioinformatics 26, 2176-2182 (2010).
-
(2010)
Bioinformatics
, vol.26
, pp. 2176-2182
-
-
Wu, D.1
-
32
-
-
84962822324
-
Dclk1 defines quiescent pancreatic progenitors that promote injury-induced regeneration and tumorigenesis
-
Westphalen, C. B. et al. Dclk1 defines quiescent pancreatic progenitors that promote injury-induced regeneration and tumorigenesis. Cell Stem Cell 18, 441-455 (2016).
-
(2016)
Cell Stem Cell
, vol.18
, pp. 441-455
-
-
Westphalen, C.B.1
-
33
-
-
84883166387
-
Developmental changes in the in vitro activated regenerative activity of primitive mammary epithelial cells
-
Makarem, M. et al. Developmental changes in the in vitro activated regenerative activity of primitive mammary epithelial cells. PLoS Biol. 11, e1001630 (2013).
-
(2013)
PLoS Biol.
, vol.11
, pp. e1001630
-
-
Makarem, M.1
-
34
-
-
84863012487
-
A mammary stem cell population identified and characterized in late embryogenesis reveals similarities to human breast cancer
-
Spike, B. T. et al. A mammary stem cell population identified and characterized in late embryogenesis reveals similarities to human breast cancer. Cell Stem Cell 10, 183-197 (2012).
-
(2012)
Cell Stem Cell
, vol.10
, pp. 183-197
-
-
Spike, B.T.1
-
35
-
-
77953384898
-
Control of mammary stem cell function by steroid hormone signalling
-
Asselin-Labat, M. L. et al. Control of mammary stem cell function by steroid hormone signalling. Nature 465, 798-802 (2010).
-
(2010)
Nature
, vol.465
, pp. 798-802
-
-
Asselin-Labat, M.L.1
-
36
-
-
38349132624
-
Deconstructing stem cell self-renewal: Genetic insights into cell-cycle regulation
-
Orford, K. W. & Scadden, D. T. Deconstructing stem cell self-renewal: genetic insights into cell-cycle regulation. Nat. Rev. Genet. 9, 115-128 (2008).
-
(2008)
Nat. Rev. Genet.
, vol.9
, pp. 115-128
-
-
Orford, K.W.1
Scadden, D.T.2
-
37
-
-
56549128268
-
Hematopoietic stem cells reversibly switch from dormancy to selfrenewal during homeostasis and repair
-
Wilson, A. et al. Hematopoietic stem cells reversibly switch from dormancy to selfrenewal during homeostasis and repair. Cell 135, 1118-1129 (2008).
-
(2008)
Cell
, vol.135
, pp. 1118-1129
-
-
Wilson, A.1
-
38
-
-
84903149534
-
MTORC1 controls the adaptive transition of quiescent stem cells from G0 to G (Alert)
-
Rodgers, J. T. et al. mTORC1 controls the adaptive transition of quiescent stem cells from G0 to G (Alert). Nature 510, 393-396 (2014).
-
(2014)
Nature
, vol.510
, pp. 393-396
-
-
Rodgers, J.T.1
-
39
-
-
73049116186
-
Lgr5 (Cve) stem cells drive self-renewal in the stomach and build long-lived gastric units in vitro
-
Barker, N. et al. Lgr5 (Cve) stem cells drive self-renewal in the stomach and build long-lived gastric units in vitro. Cell Stem Cell 6, 25-36 (2010).
-
(2010)
Cell Stem Cell
, vol.6
, pp. 25-36
-
-
Barker, N.1
-
40
-
-
55049112939
-
Lgr5 marks cycling, yet long-lived, hair follicle stem cells
-
Jaks, V. et al. Lgr5 marks cycling, yet long-lived, hair follicle stem cells. Nat. Genet. 40, 1291-1299 (2008).
-
(2008)
Nat. Genet.
, vol.40
, pp. 1291-1299
-
-
Jaks, V.1
-
41
-
-
84874730918
-
Intestinal label-retaining cells are secretory precursors expressing Lgr5
-
Buczacki, S. J. et al. Intestinal label-retaining cells are secretory precursors expressing Lgr5. Nature 495, 65-69 (2013).
-
(2013)
Nature
, vol.495
, pp. 65-69
-
-
Buczacki, S.J.1
-
42
-
-
84934984011
-
Embryonic origin of postnatal neural stem cells
-
Fuentealba, L. C. et al. Embryonic origin of postnatal neural stem cells. Cell 161, 1644-1655 (2015).
-
(2015)
Cell
, vol.161
, pp. 1644-1655
-
-
Fuentealba, L.C.1
-
43
-
-
84928704364
-
Slowly dividing neural progenitors are an embryonic origin of adult neural stem cells
-
Furutachi, S. et al. Slowly dividing neural progenitors are an embryonic origin of adult neural stem cells. Nat. Neurosci. 18, 657-665 (2015).
-
(2015)
Nat. Neurosci.
, vol.18
, pp. 657-665
-
-
Furutachi, S.1
-
44
-
-
34249679309
-
Identification of a new intrinsically timed developmental checkpoint that reprograms key hematopoietic stem cell properties
-
Bowie, M. B. et al. Identification of a new intrinsically timed developmental checkpoint that reprograms key hematopoietic stem cell properties. Proc. Natl Acad. Sci. USA 104, 5878-5882 (2007).
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 5878-5882
-
-
Bowie, M.B.1
-
45
-
-
30144433093
-
Generation of a functional mammary gland from a single stem cell
-
Shackleton, M. et al. Generation of a functional mammary gland from a single stem cell. Nature 439, 84-88 (2006).
-
(2006)
Nature
, vol.439
, pp. 84-88
-
-
Shackleton, M.1
-
47
-
-
84926507971
-
Limma powers differential expression analyses for RNAsequencing and microarray studies
-
Ritchie, M. E. et al. limma powers differential expression analyses for RNAsequencing and microarray studies. Nucleic Acids Res. 43, e47 (2015).
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. e47
-
-
Ritchie, M.E.1
-
48
-
-
78650483491
-
Optimizing the noise versus bias trade-off for Illumina whole genome expression BeadChips
-
Shi, W., Oshlack, A. & Smyth, G. K. Optimizing the noise versus bias trade-off for Illumina whole genome expression BeadChips. Nucleic Acids Res. 38, e204 (2010).
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. e204
-
-
Shi, W.1
Oshlack, A.2
Smyth, G.K.3
-
49
-
-
77951221352
-
A re-annotation pipeline for Illumina BeadArrays: Improving the interpretation of gene expression data
-
Barbosa-Morais, N. L. et al. A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data. Nucleic Acids Res. 38, e17 (2010).
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. e17
-
-
Barbosa-Morais, N.L.1
-
50
-
-
4544341015
-
Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
-
Smyth, G. K. Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Stat. Appl. Genet. Mol. Biol. https://doi.org/10.2202/1544-6115.1027 (2004).
-
(2004)
Stat. Appl. Genet. Mol. Biol
-
-
Smyth, G.K.1
-
51
-
-
33748865331
-
Empirical array quality weights in the analysis of microarray data
-
Ritchie, M. E. et al. Empirical array quality weights in the analysis of microarray data. BMC Bioinf. 7, 261 (2006).
-
(2006)
BMC Bioinf.
, vol.7
, pp. 261
-
-
Ritchie, M.E.1
-
52
-
-
18744369640
-
Use of within-array replicate spots for assessing differential expression in microarray experiments
-
Smyth, G. K., Michaud, J. & Scott, H. S. Use of within-array replicate spots for assessing differential expression in microarray experiments. Bioinformatics 21, 2067-2075 (2005).
-
(2005)
Bioinformatics
, vol.21
, pp. 2067-2075
-
-
Smyth, G.K.1
Michaud, J.2
Scott, H.S.3
-
53
-
-
84878580738
-
The Subread aligner: Fast, accurate and scalable read mapping by seed-and-vote
-
Liao, Y., Smyth, G. K. & Shi, W. The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote. Nucleic Acids Res. 41, e108 (2013).
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. e108
-
-
Liao, Y.1
Smyth, G.K.2
Shi, W.3
-
54
-
-
84897397058
-
FeatureCounts: An efficient general purpose program for assigning sequence reads to genomic features
-
Liao, Y., Smyth, G. K. & Shi, W. featureCounts: an efficient general purpose program for assigning sequence reads to genomic features. Bioinformatics 30, 923-930 (2014).
-
(2014)
Bioinformatics
, vol.30
, pp. 923-930
-
-
Liao, Y.1
Smyth, G.K.2
Shi, W.3
-
55
-
-
75249087100
-
EdgeR: A Bioconductor package for differential expression analysis of digital gene expression data
-
Robinson, M. D., McCarthy, D. J. & Smyth, G. K. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26, 139-140 (2010).
-
(2010)
Bioinformatics
, vol.26
, pp. 139-140
-
-
Robinson, M.D.1
McCarthy, D.J.2
Smyth, G.K.3
-
56
-
-
77953176036
-
A scaling normalization method for differential expression analysis of RNA-seq data
-
Robinson, M. D. & Oshlack, A. A scaling normalization method for differential expression analysis of RNA-seq data. Genome Biol. 11, R25 (2010).
-
(2010)
Genome Biol.
, vol.11
, pp. R25
-
-
Robinson, M.D.1
Oshlack, A.2
-
57
-
-
84896735766
-
Voom: Precision weights unlock linear model analysis tools for RNA-seq read counts
-
Law, C. W., Chen, Y., Shi, W. & Smyth, G. K. voom: precision weights unlock linear model analysis tools for RNA-seq read counts. Genome Biol. 15, R29 (2014).
-
(2014)
Genome Biol.
, vol.15
, pp. R29
-
-
Law, C.W.1
Chen, Y.2
Shi, W.3
Smyth, G.K.4
-
58
-
-
77953212372
-
Gene ontology analysis for RNA-seq: Accounting for selection bias
-
Young, M. D., Wakefield, M. J., Smyth, G. K. & Oshlack, A. Gene ontology analysis for RNA-seq: accounting for selection bias. Genome Biol. 11, R14 (2010).
-
(2010)
Genome Biol.
, vol.11
, pp. R14
-
-
Young, M.D.1
Wakefield, M.J.2
Smyth, G.K.3
Oshlack, A.4
-
59
-
-
53849146020
-
Model-based analysis of ChIP-Seq (MACS)
-
Zhang, Y. et al. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 9, R137 (2008).
-
(2008)
Genome Biol.
, vol.9
, pp. R137
-
-
Zhang, Y.1
-
60
-
-
84939181353
-
ChIPseeker: An R/Bioconductor package for ChIP peak annotation, comparison and visualization
-
Yu, G., Wang, L. G. & He, Q. Y. ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization. Bioinformatics 31, 2382-2383 (2015).
-
(2015)
Bioinformatics
, vol.31
, pp. 2382-2383
-
-
Yu, G.1
Wang, L.G.2
He, Q.Y.3
|