-
1
-
-
0028860781
-
Expression and characterization of the Escherichia coli fdo locus and a possible physiological role for aerobic formate dehydrogenase
-
Abaibou, H., Pommier, J., Benoit, S., Giordano, G., Mandrand-Berthelot, M.A., Expression and characterization of the Escherichia coli fdo locus and a possible physiological role for aerobic formate dehydrogenase. J. Bacteriol. 177 (1995), 7141–7149.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 7141-7149
-
-
Abaibou, H.1
Pommier, J.2
Benoit, S.3
Giordano, G.4
Mandrand-Berthelot, M.A.5
-
2
-
-
84867599712
-
Critical roles of Notch and Wnt/β-catenin pathways in the regulation of hyperplasia and/or colitis in response to bacterial infection
-
Ahmed, I., Chandrakesan, P., Tawfik, O., Xia, L., Anant, S., Umar, S., Critical roles of Notch and Wnt/β-catenin pathways in the regulation of hyperplasia and/or colitis in response to bacterial infection. Infect. Immun. 80 (2012), 3107–3121.
-
(2012)
Infect. Immun.
, vol.80
, pp. 3107-3121
-
-
Ahmed, I.1
Chandrakesan, P.2
Tawfik, O.3
Xia, L.4
Anant, S.5
Umar, S.6
-
4
-
-
34548483459
-
Culture independent analysis of ileal mucosa reveals a selective increase in invasive Escherichia coli of novel phylogeny relative to depletion of Clostridiales in Crohn's disease involving the ileum
-
Baumgart, M., Dogan, B., Rishniw, M., Weitzman, G., Bosworth, B., Yantiss, R., Orsi, R.H., Wiedmann, M., McDonough, P., Kim, S.G., et al. Culture independent analysis of ileal mucosa reveals a selective increase in invasive Escherichia coli of novel phylogeny relative to depletion of Clostridiales in Crohn's disease involving the ileum. ISME J. 1 (2007), 403–418.
-
(2007)
ISME J.
, vol.1
, pp. 403-418
-
-
Baumgart, M.1
Dogan, B.2
Rishniw, M.3
Weitzman, G.4
Bosworth, B.5
Yantiss, R.6
Orsi, R.H.7
Wiedmann, M.8
McDonough, P.9
Kim, S.G.10
-
5
-
-
0025368950
-
Structural genes for nitrate-inducible formate dehydrogenase in Escherichia coli K-12
-
Berg, B.L., Stewart, V., Structural genes for nitrate-inducible formate dehydrogenase in Escherichia coli K-12. Genetics 125 (1990), 691–702.
-
(1990)
Genetics
, vol.125
, pp. 691-702
-
-
Berg, B.L.1
Stewart, V.2
-
6
-
-
0036829094
-
Rapid development of colitis in NSAID-treated IL-10-deficient mice
-
Berg, D.J., Zhang, J., Weinstock, J.V., Ismail, H.F., Earle, K.A., Alila, H., Pamukcu, R., Moore, S., Lynch, R.G., Rapid development of colitis in NSAID-treated IL-10-deficient mice. Gastroenterology 123 (2002), 1527–1542.
-
(2002)
Gastroenterology
, vol.123
, pp. 1527-1542
-
-
Berg, D.J.1
Zhang, J.2
Weinstock, J.V.3
Ismail, H.F.4
Earle, K.A.5
Alila, H.6
Pamukcu, R.7
Moore, S.8
Lynch, R.G.9
-
7
-
-
84867744191
-
Phylotype-level 16S rRNA analysis reveals new bacterial indicators of health state in acute murine colitis
-
Berry, D., Schwab, C., Milinovich, G., Reichert, J., Ben Mahfoudh, K., Decker, T., Engel, M., Hai, B., Hainzl, E., Heider, S., et al. Phylotype-level 16S rRNA analysis reveals new bacterial indicators of health state in acute murine colitis. ISME J. 6 (2012), 2091–2106.
-
(2012)
ISME J.
, vol.6
, pp. 2091-2106
-
-
Berry, D.1
Schwab, C.2
Milinovich, G.3
Reichert, J.4
Ben Mahfoudh, K.5
Decker, T.6
Engel, M.7
Hai, B.8
Hainzl, E.9
Heider, S.10
-
8
-
-
15444350252
-
The complete genome sequence of Escherichia coli K-12
-
Blattner, F.R., Plunkett, G. 3rd, Bloch, C.A., Perna, N.T., Burland, V., Riley, M., Collado-Vides, J., Glasner, J.D., Rode, C.K., Mayhew, G.F., et al. The complete genome sequence of Escherichia coli K-12. Science 277 (1997), 1453–1462.
-
(1997)
Science
, vol.277
, pp. 1453-1462
-
-
Blattner, F.R.1
Plunkett, G.2
Bloch, C.A.3
Perna, N.T.4
Burland, V.5
Riley, M.6
Collado-Vides, J.7
Glasner, J.D.8
Rode, C.K.9
Mayhew, G.F.10
-
9
-
-
84925021592
-
Fast and sensitive protein alignment using DIAMOND
-
Buchfink, B., Xie, C., Huson, D.H., Fast and sensitive protein alignment using DIAMOND. Nat. Methods 12 (2015), 59–60.
-
(2015)
Nat. Methods
, vol.12
, pp. 59-60
-
-
Buchfink, B.1
Xie, C.2
Huson, D.H.3
-
10
-
-
84929436735
-
S- and N-Oxide Reductases
-
Cheng, V.W., Weiner, J.H., S- and N-Oxide Reductases. Ecosal Plus, 2, 2007, 2.
-
(2007)
Ecosal Plus
, vol.2
, pp. 2
-
-
Cheng, V.W.1
Weiner, J.H.2
-
11
-
-
84979556395
-
Polysaccharide Degradation by the Intestinal Microbiota and Its Influence on Human Health and Disease
-
Cockburn, D.W., Koropatkin, N.M., Polysaccharide Degradation by the Intestinal Microbiota and Its Influence on Human Health and Disease. J. Mol. Biol. 428 (2016), 3230–3252.
-
(2016)
J. Mol. Biol.
, vol.428
, pp. 3230-3252
-
-
Cockburn, D.W.1
Koropatkin, N.M.2
-
12
-
-
84959055380
-
Respiration of Nitrate and Nitrite
-
Cole, J.A., Richardson, D.J., Respiration of Nitrate and Nitrite. Ecosal Plus, 3, 2008, 3.
-
(2008)
Ecosal Plus
, vol.3
, pp. 3
-
-
Cole, J.A.1
Richardson, D.J.2
-
13
-
-
44349143335
-
Escherichia coli isolated from a Crohn's disease patient adheres, invades, and induces inflammatory responses in polarized intestinal epithelial cells
-
Eaves-Pyles, T., Allen, C.A., Taormina, J., Swidsinski, A., Tutt, C.B., Jezek, G.E., Islas-Islas, M., Torres, A.G., Escherichia coli isolated from a Crohn's disease patient adheres, invades, and induces inflammatory responses in polarized intestinal epithelial cells. Int. J. Med. Microbiol. 298 (2008), 397–409.
-
(2008)
Int. J. Med. Microbiol.
, vol.298
, pp. 397-409
-
-
Eaves-Pyles, T.1
Allen, C.A.2
Taormina, J.3
Swidsinski, A.4
Tutt, C.B.5
Jezek, G.E.6
Islas-Islas, M.7
Torres, A.G.8
-
14
-
-
84908305373
-
Glycan degradation (GlyDeR) analysis predicts mammalian gut microbiota abundance and host diet-specific adaptations
-
Eilam, O., Zarecki, R., Oberhardt, M., Ursell, L.K., Kupiec, M., Knight, R., Gophna, U., Ruppin, E., Glycan degradation (GlyDeR) analysis predicts mammalian gut microbiota abundance and host diet-specific adaptations. MBio, 5, 2014, 5.
-
(2014)
MBio
, vol.5
, pp. 5
-
-
Eilam, O.1
Zarecki, R.2
Oberhardt, M.3
Ursell, L.K.4
Kupiec, M.5
Knight, R.6
Gophna, U.7
Ruppin, E.8
-
15
-
-
79959855078
-
Predicting a human gut microbiota's response to diet in gnotobiotic mice
-
Faith, J.J., McNulty, N.P., Rey, F.E., Gordon, J.I., Predicting a human gut microbiota's response to diet in gnotobiotic mice. Science 333 (2011), 101–104.
-
(2011)
Science
, vol.333
, pp. 101-104
-
-
Faith, J.J.1
McNulty, N.P.2
Rey, F.E.3
Gordon, J.I.4
-
16
-
-
80054925355
-
Eating for two: how metabolism establishes interspecies interactions in the gut
-
Fischbach, M.A., Sonnenburg, J.L., Eating for two: how metabolism establishes interspecies interactions in the gut. Cell Host Microbe 10 (2011), 336–347.
-
(2011)
Cell Host Microbe
, vol.10
, pp. 336-347
-
-
Fischbach, M.A.1
Sonnenburg, J.L.2
-
17
-
-
84863871551
-
Microbial degradation of complex carbohydrates in the gut
-
Flint, H.J., Scott, K.P., Duncan, S.H., Louis, P., Forano, E., Microbial degradation of complex carbohydrates in the gut. Gut Microbes 3 (2012), 289–306.
-
(2012)
Gut Microbes
, vol.3
, pp. 289-306
-
-
Flint, H.J.1
Scott, K.P.2
Duncan, S.H.3
Louis, P.4
Forano, E.5
-
18
-
-
35348857386
-
Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases
-
Frank, D.N., St Amand, A.L., Feldman, R.A., Boedeker, E.C., Harpaz, N., Pace, N.R., Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases. Proc. Natl. Acad. Sci. USA 104 (2007), 13780–13785.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 13780-13785
-
-
Frank, D.N.1
St Amand, A.L.2
Feldman, R.A.3
Boedeker, E.C.4
Harpaz, N.5
Pace, N.R.6
-
19
-
-
0025939784
-
The assessment of faecal flora in patients with inflammatory bowel disease by a simplified bacteriological technique
-
Giaffer, M.H., Holdsworth, C.D., Duerden, B.I., The assessment of faecal flora in patients with inflammatory bowel disease by a simplified bacteriological technique. J. Med. Microbiol. 35 (1991), 238–243.
-
(1991)
J. Med. Microbiol.
, vol.35
, pp. 238-243
-
-
Giaffer, M.H.1
Holdsworth, C.D.2
Duerden, B.I.3
-
20
-
-
0014589126
-
Compounds which serve as the sole source of carbon or nitrogen for Salmonella typhimurium LT-2
-
Gutnick, D., Calvo, J.M., Klopotowski, T., Ames, B.N., Compounds which serve as the sole source of carbon or nitrogen for Salmonella typhimurium LT-2. J. Bacteriol. 100 (1969), 215–219.
-
(1969)
J. Bacteriol.
, vol.100
, pp. 215-219
-
-
Gutnick, D.1
Calvo, J.M.2
Klopotowski, T.3
Ames, B.N.4
-
21
-
-
48249105854
-
Complete genome sequence of the extremely acidophilic methanotroph isolate V4, Methylacidiphilum infernorum, a representative of the bacterial phylum Verrucomicrobia
-
Hou, S., Makarova, K.S., Saw, J.H., Senin, P., Ly, B.V., Zhou, Z., Ren, Y., Wang, J., Galperin, M.Y., Omelchenko, M.V., et al. Complete genome sequence of the extremely acidophilic methanotroph isolate V4, Methylacidiphilum infernorum, a representative of the bacterial phylum Verrucomicrobia. Biol. Direct, 3, 2008, 26.
-
(2008)
Biol. Direct
, vol.3
, pp. 26
-
-
Hou, S.1
Makarova, K.S.2
Saw, J.H.3
Senin, P.4
Ly, B.V.5
Zhou, Z.6
Ren, Y.7
Wang, J.8
Galperin, M.Y.9
Omelchenko, M.V.10
-
22
-
-
33847702910
-
MEGAN analysis of metagenomic data
-
Huson, D.H., Auch, A.F., Qi, J., Schuster, S.C., MEGAN analysis of metagenomic data. Genome Res. 17 (2007), 377–386.
-
(2007)
Genome Res.
, vol.17
, pp. 377-386
-
-
Huson, D.H.1
Auch, A.F.2
Qi, J.3
Schuster, S.C.4
-
23
-
-
84929502588
-
Crosstalk between Microbiota-Derived Short-Chain Fatty Acids and Intestinal Epithelial HIF Augments Tissue Barrier Function
-
Kelly, C.J., Zheng, L., Campbell, E.L., Saeedi, B., Scholz, C.C., Bayless, A.J., Wilson, K.E., Glover, L.E., Kominsky, D.J., Magnuson, A., et al. Crosstalk between Microbiota-Derived Short-Chain Fatty Acids and Intestinal Epithelial HIF Augments Tissue Barrier Function. Cell Host Microbe 17 (2015), 662–671.
-
(2015)
Cell Host Microbe
, vol.17
, pp. 662-671
-
-
Kelly, C.J.1
Zheng, L.2
Campbell, E.L.3
Saeedi, B.4
Scholz, C.C.5
Bayless, A.J.6
Wilson, K.E.7
Glover, L.E.8
Kominsky, D.J.9
Magnuson, A.10
-
24
-
-
84859925158
-
How glycan metabolism shapes the human gut microbiota
-
Koropatkin, N.M., Cameron, E.A., Martens, E.C., How glycan metabolism shapes the human gut microbiota. Nat. Rev. Microbiol. 10 (2012), 323–335.
-
(2012)
Nat. Rev. Microbiol.
, vol.10
, pp. 323-335
-
-
Koropatkin, N.M.1
Cameron, E.A.2
Martens, E.C.3
-
25
-
-
8444226694
-
The pyruvate formate lyase family: sequences, structures and activation
-
Lehtiö, L., Goldman, A., The pyruvate formate lyase family: sequences, structures and activation. Protein Eng. Des. Sel. 17 (2004), 545–552.
-
(2004)
Protein Eng. Des. Sel.
, vol.17
, pp. 545-552
-
-
Lehtiö, L.1
Goldman, A.2
-
26
-
-
84962018824
-
Bacterial molybdoenzymes: old enzymes for new purposes
-
Leimkühler, S., Iobbi-Nivol, C., Bacterial molybdoenzymes: old enzymes for new purposes. FEMS Microbiol. Rev. 40 (2016), 1–18.
-
(2016)
FEMS Microbiol. Rev.
, vol.40
, pp. 1-18
-
-
Leimkühler, S.1
Iobbi-Nivol, C.2
-
27
-
-
84988411017
-
Virulence factors enhance Citrobacter rodentium expansion through aerobic respiration
-
Lopez, C.A., Miller, B.M., Rivera-Chávez, F., Velazquez, E.M., Byndloss, M.X., Chávez-Arroyo, A., Lokken, K.L., Tsolis, R.M., Winter, S.E., Bäumler, A.J., Virulence factors enhance Citrobacter rodentium expansion through aerobic respiration. Science 353 (2016), 1249–1253.
-
(2016)
Science
, vol.353
, pp. 1249-1253
-
-
Lopez, C.A.1
Miller, B.M.2
Rivera-Chávez, F.3
Velazquez, E.M.4
Byndloss, M.X.5
Chávez-Arroyo, A.6
Lokken, K.L.7
Tsolis, R.M.8
Winter, S.E.9
Bäumler, A.J.10
-
28
-
-
34547684651
-
Host-mediated inflammation disrupts the intestinal microbiota and promotes the overgrowth of Enterobacteriaceae
-
Lupp, C., Robertson, M.L., Wickham, M.E., Sekirov, I., Champion, O.L., Gaynor, E.C., Finlay, B.B., Host-mediated inflammation disrupts the intestinal microbiota and promotes the overgrowth of Enterobacteriaceae. Cell Host Microbe 2 (2007), 119–129.
-
(2007)
Cell Host Microbe
, vol.2
, pp. 119-129
-
-
Lupp, C.1
Robertson, M.L.2
Wickham, M.E.3
Sekirov, I.4
Champion, O.L.5
Gaynor, E.C.6
Finlay, B.B.7
-
29
-
-
84959062392
-
Biosynthesis and Insertion of the Molybdenum Cofactor
-
Magalon, A., Mendel, R.R., Biosynthesis and Insertion of the Molybdenum Cofactor. Ecosal Plus, 3, 2008, 3.
-
(2008)
Ecosal Plus
, vol.3
, pp. 3
-
-
Magalon, A.1
Mendel, R.R.2
-
30
-
-
84910119733
-
The devil lies in the details: how variations in polysaccharide fine-structure impact the physiology and evolution of gut microbes
-
Martens, E.C., Kelly, A.G., Tauzin, A.S., Brumer, H., The devil lies in the details: how variations in polysaccharide fine-structure impact the physiology and evolution of gut microbes. J. Mol. Biol. 426 (2014), 3851–3865.
-
(2014)
J. Mol. Biol.
, vol.426
, pp. 3851-3865
-
-
Martens, E.C.1
Kelly, A.G.2
Tauzin, A.S.3
Brumer, H.4
-
31
-
-
79952478107
-
Microbial ecology of the murine gut associated with the development of dextran sodium sulfate-induced colitis
-
Nagalingam, N.A., Kao, J.Y., Young, V.B., Microbial ecology of the murine gut associated with the development of dextran sodium sulfate-induced colitis. Inflamm. Bowel Dis. 17 (2011), 917–926.
-
(2011)
Inflamm. Bowel Dis.
, vol.17
, pp. 917-926
-
-
Nagalingam, N.A.1
Kao, J.Y.2
Young, V.B.3
-
32
-
-
84902530496
-
The pyruvate dehydrogenase complexes: structure-based function and regulation
-
Patel, M.S., Nemeria, N.S., Furey, W., Jordan, F., The pyruvate dehydrogenase complexes: structure-based function and regulation. J. Biol. Chem. 289 (2014), 16615–16623.
-
(2014)
J. Biol. Chem.
, vol.289
, pp. 16615-16623
-
-
Patel, M.S.1
Nemeria, N.S.2
Furey, W.3
Jordan, F.4
-
33
-
-
84872688583
-
Parasite-induced TH1 cells and intestinal dysbiosis cooperate in IFN-γ-dependent elimination of Paneth cells
-
Raetz, M., Hwang, S.H., Wilhelm, C.L., Kirkland, D., Benson, A., Sturge, C.R., Mirpuri, J., Vaishnava, S., Hou, B., Defranco, A.L., et al. Parasite-induced TH1 cells and intestinal dysbiosis cooperate in IFN-γ-dependent elimination of Paneth cells. Nat. Immunol. 14 (2013), 136–142.
-
(2013)
Nat. Immunol.
, vol.14
, pp. 136-142
-
-
Raetz, M.1
Hwang, S.H.2
Wilhelm, C.L.3
Kirkland, D.4
Benson, A.5
Sturge, C.R.6
Mirpuri, J.7
Vaishnava, S.8
Hou, B.9
Defranco, A.L.10
-
34
-
-
0037898938
-
Pyruvate ferredoxin oxidoreductase and its radical intermediate
-
Ragsdale, S.W., Pyruvate ferredoxin oxidoreductase and its radical intermediate. Chem. Rev. 103 (2003), 2333–2346.
-
(2003)
Chem. Rev.
, vol.103
, pp. 2333-2346
-
-
Ragsdale, S.W.1
-
35
-
-
84880924622
-
Dysbiosis in inflammatory bowel diseases: the oxygen hypothesis
-
Rigottier-Gois, L., Dysbiosis in inflammatory bowel diseases: the oxygen hypothesis. ISME J. 7 (2013), 1256–1261.
-
(2013)
ISME J.
, vol.7
, pp. 1256-1261
-
-
Rigottier-Gois, L.1
-
36
-
-
84963512940
-
Depletion of Butyrate-Producing Clostridia from the Gut Microbiota Drives an Aerobic Luminal Expansion of Salmonella
-
Rivera-Chávez, F., Zhang, L.F., Faber, F., Lopez, C.A., Byndloss, M.X., Olsan, E.E., Xu, G., Velazquez, E.M., Lebrilla, C.B., Winter, S.E., Bäumler, A.J., Depletion of Butyrate-Producing Clostridia from the Gut Microbiota Drives an Aerobic Luminal Expansion of Salmonella. Cell Host Microbe 19 (2016), 443–454.
-
(2016)
Cell Host Microbe
, vol.19
, pp. 443-454
-
-
Rivera-Chávez, F.1
Zhang, L.F.2
Faber, F.3
Lopez, C.A.4
Byndloss, M.X.5
Olsan, E.E.6
Xu, G.7
Velazquez, E.M.8
Lebrilla, C.B.9
Winter, S.E.10
Bäumler, A.J.11
-
37
-
-
0014483639
-
Nitrate reductase complex of Escherichia coli K-12: isolation and characterization of mutants unable to reduce nitrate
-
Ruiz-Herrera, J., Showe, M.K., DeMoss, J.A., Nitrate reductase complex of Escherichia coli K-12: isolation and characterization of mutants unable to reduce nitrate. J. Bacteriol. 97 (1969), 1291–1297.
-
(1969)
J. Bacteriol.
, vol.97
, pp. 1291-1297
-
-
Ruiz-Herrera, J.1
Showe, M.K.2
DeMoss, J.A.3
-
38
-
-
33745610880
-
A humanized gnotobiotic mouse model of host-archaeal-bacterial mutualism
-
Samuel, B.S., Gordon, J.I., A humanized gnotobiotic mouse model of host-archaeal-bacterial mutualism. Proc. Natl. Acad. Sci. USA 103 (2006), 10011–10016.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 10011-10016
-
-
Samuel, B.S.1
Gordon, J.I.2
-
39
-
-
84959066048
-
Fermentative Pyruvate and Acetyl-Coenzyme A Metabolism
-
Sawers, R.G., Clark, D.P., Fermentative Pyruvate and Acetyl-Coenzyme A Metabolism. Ecosal Plus, 1, 2004, 1.
-
(2004)
Ecosal Plus
, vol.1
, pp. 1
-
-
Sawers, R.G.1
Clark, D.P.2
-
40
-
-
84959041661
-
Anaerobic Formate and Hydrogen Metabolism
-
Sawers, R.G., Blokesch, M., Böck, A., Anaerobic Formate and Hydrogen Metabolism. Ecosal Plus, 1, 2004, 1.
-
(2004)
Ecosal Plus
, vol.1
, pp. 1
-
-
Sawers, R.G.1
Blokesch, M.2
Böck, A.3
-
41
-
-
0017225043
-
Formation of the formate-nitrate electron transport pathway from inactive components in Escherichia coli
-
Scott, R.H., DeMoss, J.A., Formation of the formate-nitrate electron transport pathway from inactive components in Escherichia coli. J. Bacteriol. 126 (1976), 478–486.
-
(1976)
J. Bacteriol.
, vol.126
, pp. 478-486
-
-
Scott, R.H.1
DeMoss, J.A.2
-
42
-
-
0037302961
-
Alterations of the dominant faecal bacterial groups in patients with Crohn's disease of the colon
-
Seksik, P., Rigottier-Gois, L., Gramet, G., Sutren, M., Pochart, P., Marteau, P., Jian, R., Doré, J., Alterations of the dominant faecal bacterial groups in patients with Crohn's disease of the colon. Gut 52 (2003), 237–242.
-
(2003)
Gut
, vol.52
, pp. 237-242
-
-
Seksik, P.1
Rigottier-Gois, L.2
Gramet, G.3
Sutren, M.4
Pochart, P.5
Marteau, P.6
Jian, R.7
Doré, J.8
-
43
-
-
84940451011
-
Proteobacteria: microbial signature of dysbiosis in gut microbiota
-
Shin, N.R., Whon, T.W., Bae, J.W., Proteobacteria: microbial signature of dysbiosis in gut microbiota. Trends Biotechnol. 33 (2015), 496–503.
-
(2015)
Trends Biotechnol.
, vol.33
, pp. 496-503
-
-
Shin, N.R.1
Whon, T.W.2
Bae, J.W.3
-
44
-
-
84977622019
-
Diet-microbiota interactions as moderators of human metabolism
-
Sonnenburg, J.L., Bäckhed, F., Diet-microbiota interactions as moderators of human metabolism. Nature 535 (2016), 56–64.
-
(2016)
Nature
, vol.535
, pp. 56-64
-
-
Sonnenburg, J.L.1
Bäckhed, F.2
-
45
-
-
77953901767
-
Specificity of polysaccharide use in intestinal bacteroides species determines diet-induced microbiota alterations
-
Sonnenburg, E.D., Zheng, H., Joglekar, P., Higginbottom, S.K., Firbank, S.J., Bolam, D.N., Sonnenburg, J.L., Specificity of polysaccharide use in intestinal bacteroides species determines diet-induced microbiota alterations. Cell 141 (2010), 1241–1252.
-
(2010)
Cell
, vol.141
, pp. 1241-1252
-
-
Sonnenburg, E.D.1
Zheng, H.2
Joglekar, P.3
Higginbottom, S.K.4
Firbank, S.J.5
Bolam, D.N.6
Sonnenburg, J.L.7
-
46
-
-
35649026345
-
Salmonella enterica serovar typhimurium exploits inflammation to compete with the intestinal microbiota
-
Stecher, B., Robbiani, R., Walker, A.W., Westendorf, A.M., Barthel, M., Kremer, M., Chaffron, S., Macpherson, A.J., Buer, J., Parkhill, J., et al. Salmonella enterica serovar typhimurium exploits inflammation to compete with the intestinal microbiota. PLoS Biol. 5 (2007), 2177–2189.
-
(2007)
PLoS Biol.
, vol.5
, pp. 2177-2189
-
-
Stecher, B.1
Robbiani, R.2
Walker, A.W.3
Westendorf, A.M.4
Barthel, M.5
Kremer, M.6
Chaffron, S.7
Macpherson, A.J.8
Buer, J.9
Parkhill, J.10
-
47
-
-
85011834561
-
The formation of hydrogen from glucose and formic acid by the so-called “resting” B. coli. I
-
Tasman, A., Pot, A.W., The formation of hydrogen from glucose and formic acid by the so-called “resting” B. coli. I. Biochem. J. 29 (1935), 1749–1756.
-
(1935)
Biochem. J.
, vol.29
, pp. 1749-1756
-
-
Tasman, A.1
Pot, A.W.2
-
48
-
-
0015520637
-
Properties and function of the pyruvate-formate-lyase reaction in clostridiae
-
Thauer, R.K., Kirchniawy, F.H., Jungermann, K.A., Properties and function of the pyruvate-formate-lyase reaction in clostridiae. Eur. J. Biochem. 27 (1972), 282–290.
-
(1972)
Eur. J. Biochem.
, vol.27
, pp. 282-290
-
-
Thauer, R.K.1
Kirchniawy, F.H.2
Jungermann, K.A.3
-
49
-
-
84929210222
-
The Aerobic and Anaerobic Respiratory Chain of Escherichia coli and Salmonella enterica: Enzymes and Energetics
-
Unden, G., Steinmetz, P.A., Degreif-Dünnwald, P., The Aerobic and Anaerobic Respiratory Chain of Escherichia coli and Salmonella enterica: Enzymes and Energetics. Ecosal Plus, 6, 2014, 10.1128/ecosalplus.ESP-0005-2013.
-
(2014)
Ecosal Plus
, vol.6
-
-
Unden, G.1
Steinmetz, P.A.2
Degreif-Dünnwald, P.3
-
50
-
-
84880540665
-
Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism
-
Vujkovic-Cvijin, I., Dunham, R.M., Iwai, S., Maher, M.C., Albright, R.G., Broadhurst, M.J., Hernandez, R.D., Lederman, M.M., Huang, Y., Somsouk, M., et al. Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism. Sci. Transl. Med., 5, 2013, 193ra91.
-
(2013)
Sci. Transl. Med.
, vol.5
, pp. 193ra91
-
-
Vujkovic-Cvijin, I.1
Dunham, R.M.2
Iwai, S.3
Maher, M.C.4
Albright, R.G.5
Broadhurst, M.J.6
Hernandez, R.D.7
Lederman, M.M.8
Huang, Y.9
Somsouk, M.10
-
51
-
-
0042389665
-
Coordinate regulation of the Escherichia coli formate dehydrogenase fdnGHI and fdhF genes in response to nitrate, nitrite, and formate: roles for NarL and NarP
-
Wang, H., Gunsalus, R.P., Coordinate regulation of the Escherichia coli formate dehydrogenase fdnGHI and fdhF genes in response to nitrate, nitrite, and formate: roles for NarL and NarP. J. Bacteriol. 185 (2003), 5076–5085.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 5076-5085
-
-
Wang, H.1
Gunsalus, R.P.2
-
52
-
-
84876501381
-
The dynamics of gut-associated microbial communities during inflammation
-
Winter, S.E., Lopez, C.A., Bäumler, A.J., The dynamics of gut-associated microbial communities during inflammation. EMBO Rep. 14 (2013), 319–327.
-
(2013)
EMBO Rep.
, vol.14
, pp. 319-327
-
-
Winter, S.E.1
Lopez, C.A.2
Bäumler, A.J.3
-
53
-
-
84873513423
-
Host-derived nitrate boosts growth of E. coli in the inflamed gut
-
Winter, S.E., Winter, M.G., Xavier, M.N., Thiennimitr, P., Poon, V., Keestra, A.M., Laughlin, R.C., Gomez, G., Wu, J., Lawhon, S.D., et al. Host-derived nitrate boosts growth of E. coli in the inflamed gut. Science 339 (2013), 708–711.
-
(2013)
Science
, vol.339
, pp. 708-711
-
-
Winter, S.E.1
Winter, M.G.2
Xavier, M.N.3
Thiennimitr, P.4
Poon, V.5
Keestra, A.M.6
Laughlin, R.C.7
Gomez, G.8
Wu, J.9
Lawhon, S.D.10
-
54
-
-
50549181163
-
Formic acid dehydrogenasecytochrome b1 complex from Escherichia coli
-
Wrigley, C.W., Linnane, A.W., Formic acid dehydrogenasecytochrome b1 complex from Escherichia coli. Biochem. Biophys. Res. Commun. 4 (1961), 66–70.
-
(1961)
Biochem. Biophys. Res. Commun.
, vol.4
, pp. 66-70
-
-
Wrigley, C.W.1
Linnane, A.W.2
-
55
-
-
80053618114
-
Linking long-term dietary patterns with gut microbial enterotypes
-
Wu, G.D., Chen, J., Hoffmann, C., Bittinger, K., Chen, Y.Y., Keilbaugh, S.A., Bewtra, M., Knights, D., Walters, W.A., Knight, R., et al. Linking long-term dietary patterns with gut microbial enterotypes. Science 334 (2011), 105–108.
-
(2011)
Science
, vol.334
, pp. 105-108
-
-
Wu, G.D.1
Chen, J.2
Hoffmann, C.3
Bittinger, K.4
Chen, Y.Y.5
Keilbaugh, S.A.6
Bewtra, M.7
Knights, D.8
Walters, W.A.9
Knight, R.10
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