The pyruvate formate lyase family: Sequences, structures and activation

Protein Engineering, Design and Selection

Volumn 17, Issue 6, 2004, Pages 545-552

  Lehtio L ^a   Goldman, A ^a  

^a UNIVERSITY OF HELSINKI   (Finland)

Author keywords

Activation; Pyruvate formate lyase; Radical; Trimer

Indexed keywords

CLONING; DIMERS; ESCHERICHIA COLI; GENES;

OLIGOMERIZATION; RADICAL ENZYMES; TRIMER;

ENZYMES;

BACTERIAL ENZYME; FORMATE ACETYLTRANSFERASE; GENOMIC DNA; LYASE; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTICLE; CONSENSUS SEQUENCE; ENZYME ACTIVATION; ENZYME ACTIVE SITE; ENZYME STRUCTURE; ESCHERICHIA COLI; GENE EXPRESSION; LIGHT SCATTERING; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; OLIGOMERIZATION; PHYLOGENY; PLASMID; PRIORITY JOURNAL; SEQUENCE DATABASE;

ACETYLTRANSFERASES; AMINO ACID SEQUENCE; ARCHAEOGLOBUS FULGIDUS; CATALYTIC DOMAIN; CHROMATOGRAPHY, GEL; CLONING, MOLECULAR; CONSENSUS SEQUENCE; CONSERVED SEQUENCE; CYSTEINE; DNA, ARCHAEAL; ELECTROPHORESIS, POLYACRYLAMIDE GEL; ENZYME ACTIVATION; ESCHERICHIA COLI; LIGHT; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MOLECULAR WEIGHT; PHYLOGENY; PROTEIN STRUCTURE, TERTIARY; PROTEIN SUBUNITS; RECOMBINANT PROTEINS; SCATTERING, RADIATION; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID;

ARCHAEOGLOBUS; ARCHAEOGLOBUS FULGIDUS; BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; NEGIBACTERIA; PROKARYOTA;

EID: 8444226694     PISSN: 17410126     EISSN: None     Source Type: Journal    
DOI: 10.1093/protein/gzh059     Document Type: Article

References (38)

1. Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W. and Lipman, D.J. (1997) Nucleic Acids Res., 25, 3389-3402.
2. Asanuma, N. and Hino, T. (2000) Appl. Environ. Microbiol., 66, 3773-3777.
3. Baykov, A.A., Cooperman, B.S., Goldman, A. and Lahti, R. (1999) Prog. Mol. Subcell. Biol. 23, 127-150.
4. Becker, A. and Kabsch, W. (2002) J. Biol. Chem., 277, 40036-40042.
5. Becker, A., Fritz-Wolf, K., Kabsch, W., Knappe, J., Schultz, S. and Volker Wagner, A.F. (1999) Nat. Struct. Biol., 6, 969-975.
6. Berkovitch, F., Nicolet, Y., Wan, J.T., Jarrett, J.T. and Drennan, C.L. (2004) Science, 303, 76-79.
7. Bradford, M.M. (1976) Anal. Biochem., 72, 248-254.
8. Conradt, H., Hohmann-Berger, M, Hohmann, H.P., Blaschkowski, H.P. and Knappe, J. (1984) Arch. Biochem. Biophys., 228, 133-142.
9. Delano, W.L. (2002) The PyMOL Molecular Graphics System, San Carlos, CA. www.pymol.org.
10. Dobrindt, U., Blum-Oehler, G., Nagy, G., Schneider, G., Johann, A., Gottschalk, G. and Hacker, J. (2002) Infect. Immun., 70, 6365-6372.
11. Felsenstein, J. (1989) Cladistics, 5, 164-166.
12. Frey, M., Rothe, M., Wagner, A.F. and Knappe, J. (1994) J. Biol. Chem., 269, 12432-12437.
13. Glatigny, A. and Scazzocchio, C. (1995) J. Biol. Chem., 270, 3534-3550.
14. Hesslinger, C., Fairhurst, S.A. and Sawers, G. (1998) Mol. Microbiol., 27, 477-492.
15. Kane, S.R., Beller, H.R., Legler, T.C. and Anderson, R.T. (2002) Biodegradation, 13, 149-154.
16. Klenk, H.P. et al. (1997) Nature, 390, 364-370.
17. Knappe, J., Neugebauer, F.A., Blaschkowski, H.P. and Ganzler, M. (1984) Proc. Natl Acad. Sci. USA, 81, 1332-1335.
18. Knappe, J., Elbert, S., Frey, M. and Wagner, A.F. (1993) Biochem. Soc. Trans., 21, 731-734.
19. Layer, G., Moser, J., Heinz, D.W., Jahn, D. and Schubert, W.D. (2003) EMBO J., 22, 6214-6224.
20. Lehtiö, L., Leppänen, V.M., Kozarich, J.W. and Goldman, A. (2002) Acta Crystallogr. D, 58 (Pt 12), 2209-2212.
21. Leppanen, V.M., Merckel, M.C., Ollis, D.L., Wong, K.K., Kozarich, J.W. and Goldman, A. (1999) Struct. Fold. Des., 7, 733-744.
22. Leuthner, B., Leutwein, C., Schulz, H., Horth, P., Haehnel, W., Schiltz, E., Schagger, H. and Heider J. (1998) Mol. Microbiol., 28, 615-628.
23. Logan, D.T., Andersson, J., Sjoberg, B.M. and Nordlund, P. (1999) Science, 283, 1499-1504.
24. Logan, D.T., Mulliez, E., Larsson, K.M., Bodevin, S., Atta, M., Garnaud, P.E., Sjoberg, B.M. and Fontecave, M. (2003) Proc. Natl Acad. Sci. USA, 100, 3826-3831.
25. Mulliez, E., Fontecave, M., Gaillard, J. and Reichard, P. (1993) J. Biol. Chem., 268, 2296-2299.
26. Nicholas, K.B. and Nicholas, N.B., Jr (1997) Genedoc: a tool for editing and annotating multiple sequence alignments. Distributed by the authors.
27. O'Brien, J.R., Raynaud, C., Croux, C., Girbal, L., Soucaille, P. and Lanzilotta, W.N. (2004) Biochemistry, 43, 4635-4645.
28. Ollagnier, S., Mulliez, E., Gaillard, J., Eliasson, R., Fontecave, M. and Reichard, P. (1996)J. Biol. Chem., 271, 9410-9416.
29. Page, R.D. (1996) Comput. Appl. Biosci., 12, 357-358.
30. Raynaud, C., Sarcabal, P., Meynial-Salles, I., Croux, C. and Soucaille, P. (2003) Proc. Natl Acad. Sci. USA, 100, 5010-5015.
31. Salanoubat, M. et al. (2002) Nature, 415, 497-502.
32. Selmer, T. and Andrei, P.I. (2001) Eur. J. Biochem., 268, 1363-1372.
33. Sofia, H.J., Chen, G., Hetzler, B.G., Reyes-Spindola, J.F. and Miller, N.E. (2001) Nucleic Acids Res., 29, 1097-1106.
34. Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994) Nucleic Acids Res., 22, 4673-4680.
35. Unkrig, V., Neugebauer, F.A. and Knappe, J. (1989) Eur. J. Biochem., 184, 723-728.
36. Wagner, A.F., Frey, M., Neugebauer, F.A., Schafer, W. and Knappe, J. (1992) Proc. Natl Acad. Sci. USA, 89, 996-1000.
37. Wagner, A.F., Schultz, S., Bomke, J., Pils, T., Lehmann, W.D. and Knappe, J. (2001) Biochem. Biophys. Res. Commun., 285, 456-462.
38. Young, P., Andersson, J., Sahlin, M. and Sjoberg, B.M. (1996) J. Biol. Chem., 271, 20770-20775.