Anaerobic formate and hydrogen metabolism

EcoSal Plus

Volumn 1, Issue 1, 2004, Pages

  Gary Sawers, R ^a   Blokesch, Melanie ^b   Böck, August ^b  

^a JOHN INNES CENTRE   (United Kingdom)

^b UNIVERSITY OF MUNICH   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84959041661     PISSN: None     EISSN: 23246200     Source Type: Journal    
DOI: 10.1128/ecosalplus.3.5.4     Document Type: Article

References (159)

1. Axley MJ, Grahame DA, Stadtman TC. 1990. Escherichia coli formate-hydrogen lyase: purification and properties of the seleniumdependent formate dehydrogenase component. J Biol Chem 265:18213-18218.
2. Cox JC, Edwards ES, DeMoss JA. 1981. Resolution of distinct selenium-containing formate dehydrogenases from Escherichia coli. J Bacteriol 145:1317-1324.
3. Gladyshev VN, Boyington JC, Khangulov SV, Grahame DA, Stadtman TC, Sun PD. 1996. Characterization of crystalline formate dehydrogenase H from Escherichia coli. J Biol Chem 271:8095-8100.
4. Khangulov SV, Gladyshev VN, Dismukes GC, Stadtman TC. 1998. Selenium-containing formate dehydrogenase H from Escherichia coli: a molybdopterin enzyme that catalyzes formate oxidation without oxygen transfer. Biochemistry 37:3518-3528.
5. Pierik AJ, Roseboom W, Happe RP, Bagley KA, Albracht SPJ. 1999. Carbon monoxide and cyanide as intrinsic ligands to iron in the active site of [NiFe]-hydrogenases. J Biol Chem 274:3331-3337.
6. Ballantine SP, Boxer DH. 1985. Nickel-containing hydrogenase isoenzymes from anaerobically grown Escherichia coli K-12. J Bacteriol 163:454-459.
7. Sawers RG, Boxer DH. 1986. Purification and properties of membrane-bound hydrogenase isoenzyme 1 from anaerobically grown Escherichia coli K12. Eur J Biochem 156:265-275.
8. Adams MWW, Hall DO. 1979. Purification of membrane-bound hydrogenase of Escherichia coli. Biochem J 183:11-22.
9. Ballantine SP, Boxer DH. 1986. Isolation and characterisation of a soluble active fragment of hydrogenase isoenzyme 2 from the membranes of anaerobically grown Escherichia coli. Eur J Biochem 156:277-284.
10. DerVartanian ME, Menon NK, Przybyla AE, Peck HD, Jr, DerVartanian DV. 1996. Electron paramagnetic resonance (EPR) studies on hydrogenase-1 (HYD1) purified from a mutant strain (AP6) of Escherichia coli enhanced in HYD1. Biochem Biophys Res Commun 227:211-215.
11. Francis K, Patel P, Wendt JC, Shanmugam KT. 1990. Purification and characterisation of two forms of hydrogenase isoenzyme 1 from Escherichia coli. J Bacteriol 172:5750-5757.
12. Sawers RG, Jamieson DJ, F HC, Boxer DH. 1986. Characterisation and physiological roles of membrane-bound hydrogenase isoenzymes from Escherichia coli. J Bacteriol 168:398-404.
13. Rodrigue A, Chanal A, Beck K, Müller M, Wu LF. 1999. Cotranslocation of a periplasmic enzyme complex by a hitchhiker mechanism through the bacterial Tat pathway. J Biol Chem 274:13223-13228.
14. 1 ATP synthase activity. J Bacteriol 179:6736-6740.
15. Blokesch M, Paschos A, Theodoratou E, Bauer A, Hube M, Huth S, Böck A. 2002. Metal insertion into NiFe-hydrogenases. Biochem Soc Trans 30:674-680.
16. Freiberg C, Fellay R, Bairoch A, Broughton WJ, Rosenthal A, Perret X. 1997. Molecular basis of symbiosis between Rhizobium and legumes. Nature 387:394-401.
17. Dross F, Geisler V, Lenger R, Theis F, Kraft T, Fahrenholz F, Kojro E, Duchene A, Tripier D, Juvenal K, Kröger A. 1992. The quinone-reactive Ni/Fe-hydrogenase of Wolinella succinogenes. Eur J Biochem 206:93-102.
18. Sawers G. 1999. The aerobic/anaerobic interface. Curr Opin Microbiol 2:181-187.
19. Stephenson M, Stickland LH. 1932. Hydrogenlyases. Bacterial enzymes liberating molecular hydrogen. Biochem J 26:712-724.
20. +-reducing hydrogenase provides reduced pyridine nucleotides during citrate fermentation by Klebsiella pneumoniae. J Bacteriol 181:241-245.
21. Przybyla AE, Robbins J, Menon N, Peck HD. 1992. Structurefunction relationships among nickel-containing hydrogenases. FEMS Microbiol Rev 88:109-136.
22. Gest H, Peck HD, Jr. 1955. A study of the hydrogenlyase reaction with systems derived from normal and anaerogenic coli-aerogenes bacteria. J Bacteriol 70:326-334.
23. Sawers G. 1994. The hydrogenases and formate dehydrogenases of Escherichia coli. Antonie van Leeuwenhoek 66:57-88.
24. 4 cluster. Science 275:1305-1308.
25. Pecher A, Zinoni F, Jatsatienr C, Wirth R, Hennecke H, Böck A. 1983. On the redox control of synthesis of anaerobically induced enzymes in enterobacteriaceae. Arch Microbiol 136:131-136.
26. Zinoni F, Birkmann A, Stadtman TC, Böck A. 1986. Nucleotide sequence and expression of the selenocysteine-containing polypeptide of formate dehydrogenase (formate-hydrogen-lyase-linked) from Escherichia coli. Proc Natl Acad Sci USA 83:4650-4654.
27. Stefani M, Taddei N, Ramponi G. 1997. Insights into acylphosphatase structure and catalytic mechanism. Cell Mol Life Sci 53:141-151.
28. Heider J, Böck A. 1993. Selenium metabolism in microorganisms. Adv Microbial Physiol 35:71-109.
29. Axley MJ, Grahame DA. 1991. Kinetics of formate dehydrogenase of Escherichia coli formate-hydrogenlyase. J Biol Chem 266:13731-13736.
30. Axley MJ, Böck A, Stadtman TC. 1991. Catalytic properties of an Escherichia coli formate dehydrogenase mutant in which sulfur replaces selenium. Proc Natl Acad Sci USA 88:8450-8454.
31. Gladyshev VN, Khangulov SV, Axeley MJ, Stadtman TC. 1994. Coordination of selenium to molybdenum in formate dehydrogenase H from Escherichia coli. Proc Natl Acad Sci USA 91:7708-7711.
32. Jormakka M, Törnroth S, Byrne B, Iwata S. 2002. Molecular basis of proton motive force generation: structure of formate dehydrogenase-N. Science 295:1863-1868.
33. Bertero MG, Rothery RA, Palak M, Hou C, Lim D, Blasco F, Weiner JH, Strynadka NC. 2003. Insights into the respiratory electron transfer pathway from the structure of nitrate reductase A. Nat Struct Biol 10:681-687.
34. Jormakka M, Richardson D, Byrne B, Iwata S. 2004. Architecture of NarGH reveals a structural classification of Mo-bisMGD enzymes. Structure (London) 12:95-104.
35. Schlensog V, Birkmann A, Böck A. 1989. Mutations in trans which affect the anaerobic expression of a formate dehydrogenase (fdhF) structural gene. Arch Microbiol 152:83-89.
36. Böhm R, Sauter M, Böck A. 1990. Nucleotide sequence and expression of an operon in Escherichia coli coding for formate hydrogenlyase components. Mol Microbiol 4:231-243.
37. Rossmann R, Maier T, Lottspeich F, Böck A. 1995. Characterisation of a protease from Escherichia coli involved in hydrogenase maturation. Eur J Biochem 227:545-550.
38. Fearnley IM, Walker JE. 1992. Conservation of sequences of subunits of mitochondrial complex I and their relationships with other proteins. Biochim Biophys Acta 1140:105-114.
39. Wilkins MR, Lindskog I, Gasteiger E, Bairoch A, Sanchez J-C, Hochstrasser DF, Appel RD. 1997. Detailed peptide characterisation using PEPTIDEMASS-a World-Wide Web accessible tool. Electrophoresis 18:403-408.
40. Albracht SPJ. 1993. Intimate relationships of the large and small subunits of nickel hydrogenases with two nuclear encoded subunits of mitochondrial NADH:ubiquinone oxidoreductase. Biochim Biophys Acta 1144: 221-224.
41. Friedrich T, Scheide D. 2000. The respiratory complex I of bacteria, archaea and eukarya and its module common with membrane-bound multisubunit hydrogenases. FEBS Lett 479:1-5.
42. Andrews SC, Berks BC, McClay J, Ambler A, Quail MA, Golby P, Guest JR. 1997. A 12-cistron Escherichia coli operon (hyf) encoding a putative proton-translocating formate hydrogenlyase system. Microbiology 143:3633-3647.
43. Schlensog V, Lutz S, Böck A. 1994. Purification and DNAbinding properties of FHLA, the transcriptional activator of the formate hydrogenlyase system from E. coli. J Biol Chem 269:19590-19596.
44. Van der Spek TM, Arendsen AF, Happe RP, Yun S, Bagley KA, Stufkens DJ, Hagen WR, Albracht SPJ. 1996. Similarities in the architecture of the active sites of Ni-hydrogenases and Fehydrogenases detected by means of infrared spectroscopy. Eur J Biochem 237:629-634.
45. 54-dependent transcriptional activators FhlA and HyfR. J Bacteriol 184:6642-6653.
46. Stadtman TC. 1991. Biosynthesis and function of selenocysteinecontaining enzymes. J Biol Chem 59:16257-16260.
47. 2 production by Escherichia coli at alkaline and acidic pH. FEBS Lett 516:172-178.
48. Sauter M, Böhm R, Böck A. 1992. Mutational analysis of the operon (hyc) determining hydrogenase 3 formation in Escherichia coli. Mol Microbiol 6:1523-1532.
49. 2 consumption by Escherichia coli coupled via hydrogenase 1 or hydrogenase 2 to different terminal electron acceptors. FEMS Microbiol Lett 202:121-124.
50. Leonhartsberger S, Korsa I, Böck A. 2002. The molecular biology of formate metabolism in Enterobacteria. J Mol Microbiol Biotechnol 4:269-276.
51. Suppmann B, Sawers G. 1994. Isolation and characterization of hypophosphite-resistant mutants of Escherichia coli: identification of the FocA protein, encoded by the pfl operon, as a putative formate transporter. Mol Microbiol 11:965-982.
52. Menon NK, Robbins J, Peck HD, Chatelus CY, Choi E-S, Przybyla AE. 1990. Cloning and sequencing of a putative Escherichia coli (NiFe) hydrogenase-1 operon containing six open reading frames. J Bacteriol 172:1969-1977.
53. Reissmann S, Hochleitner E, Wang H, Paschos A, Lottspeich F, Glass RS, Böck A. 2003. Taming of a poison: biosynthesis of the NiFehydrogenase cyanide ligands. Science 299:1067-1070.
54. Rodrigue A, Boxer DH, Mandrand-Berthelot M-A, Wu L-F. 1996. Requirement for nickel of the transmembrane translocation of NiFe-hydrogenase 2 in Escherichia coli. FEBS Lett 392:81-86.
55. Berks BC, Palmer T. 2003. Moving folded proteins across the bacterial cell membrane. Microbiology 149:547-556.
56. Fritsche E, Paschos A, Beisel H-G, Böck A, Huber R. 1999. Crystal structure of the hydrogenase maturating endodpeptidase HYBD from Escherichia coli. J Mol Biol 288:989-998.
57. Blokesch M, Rohrmoser M, Rode S, Böck A. 2004. HybF, a zinc containing protein involved in NiFe hydrogenase maturation. J Bacteriol 186:2603-2611.
58. Hube M, Blokesch M, Böck A. 2002. Network of hydrogenase maturation in Escherichia coli: role of accessory proteins HypA and HybF. J Bacteriol 184:3879-3885.
59. Menon NK, Robbins J, Wendt JC, Shanmugam KT, Przybyla AE. 1991. Mutational analysis and characterisation of the Escherichia coli hya operon, which encodes (NiFe) hydrogenase 1. J Bacteriol 173:4851-4861.
60. Messenger SL, Green J. 2003. FNR-mediated regulation of hyp expression in Escherichia coli. FEMS Microbiol Lett 228:81-86.
61. Friedrich B, Schwartz E. 1993. Molecular biology of hydrogen utilisation in aerobic chemolithotrophs. Annu Rev Microbiol 47:351-383.
62. Vignais PM, Biloud B, Meyer J. 2001. Classification and phylogeny of hydrogenases. FEMS Microbol Rev 25:455-501.
63. Volbeda A, Charon MH, Piras C, Hatchikian EC, Frey M, Fontecilla-Camps JC. 1995. Crystal structure of the nickel-iron hydrogenase from Desulfovibrio gigas. Nature 373:580-587.
64. Wu L-F, Mandrand-Berthelot M-A. 1986. Genetic and physiological characterisation of new Escherichia coli mutants impaired in hydrogenase activity. Biochimie 68:167-179.
65. S and the transcriptional activator AppY on induction of the Escherichia coli hya and cbdAB-appA operons in response to carbon and phosphate starvation. J Bacteriol 179:2141-2146.
66. Brønsted L, Atlung T. 1994. Anaerobic regulation of the hydrogenase 1 (hya) operon of Escherichia coli. J Bacteriol 176:5423-5428.
67. King PW, Przybyla AE. 1999. Response of hya expression to external pH in Escherichia coli. J Bacteriol 181:5250-5256.
68. Yerkes JH, Casson LP, Honkanen AK, Walker GC. 1984. Anaerobiosis induces expression of ant, a new Escherichia coli locus with a role in anaerobic electron transport. J Bacteriol 158:180-186.
69. Sawers RG, Ballantine SP, Boxer DH. 1985. Differential expression of hydrogenase isoenzymes in Escherichia coli K-12: evidence for a third isoenzyme. J Bacteriol 164:1324-1331.
70. Ingmer H, Miller CA, Cohen SN. 1998. Destabilized inheritance of pSC101 and other Escherichia coli plasmids by DpiA, a novel twocomponent system regulator. Mol Microbiol 29:49-59.
71. Stoker K, Oltmann LF, Stouthammer AH. 1989. Randomly induced Escherichia coli K-12 Tn5 insertion mutants defective in hydrogenase activity. J Bacteriol 171:831-836.
72. Peck HD, Gest H. 1957. Formic dehydrogenase and the hydrogenlyase enzyme complex in coli-aerogenes bacteria. J Bacteriol 73:706-721.
73. Zinoni F, Birkmann A, Leinfelder W, Böck A. 1987. Cotranslational insertion of selenocysteine into formate dehydrogenase from Escherichia coli directed by a UGA codon. Proc Natl Acad Sci USA 84:3156-3160.
74. Magalon A, Böck A. 2000. Analysis of the HypC-HycE complex, a key intermediate in the assembly of the metal center of the Escherichia coli hydrogenase 3. J Biol Chem 275:21114-21220.
75. Birkmann A, Sawers RG, Böck A. 1987. Involvement of the ntrA gene product in the anaerobic metabolism of Escherichia coli. Mol Gen Genet 210:535-542.
76. Birkmann A, Zinoni F, Sawers G, Böck A. 1987. Factors affecting transcriptional regulation of the formate-hydrogen-lyase pathway of Escherichia coli. Arch Microbiol 148:44-51.
77. Lutz S, Böhm R, Beier A, Böck A. 1990. Characterisation of divergent NtrA-dependent promoters in the anaerobically expressed gene cluster coding for hydrogenase 3 components of Escherichia coli. Mol Microbiol 4:13-20.
78. Lutz S, Jacobi A, Schlensog V, Böhm R, Sawers G, Böck A. 1991. Molecular characterisation of an operon (hyp) necessary for the activity of the three hydrogenase isoenzymes in Escherichia coli. Mol Microbiol 5:123-135.
79. Rossmann R, Sauter M, Lottspeich F, Böck A. 1994. Maturation of the large subunit (HycE) of hydrogenase 3 of Escherichia coli requires nickel incorporation followed by C-terminal processing at Arg537. Eur J Biochem 220:377-384.
80. Schlensog V, Böck A. 1990. Identification and sequence analysis of the gene encoding the transcriptional activator of the formate hydrogenlyase system of Escherichia coli. Mol Microbiol 4:1319-1327.
81. Self WT, Grunden AM, Hasona A, Shanmugam KT. 1999. Transcriptional regulation of molybdoenzyme synthesis in Escherichia coli in response to molybdenum: ModE-molybdate, a repressor of the modABCD operon (molybdate transport) operon is a secondary transcriptional activator for the hyc and nar operons. Microbiology 145:41-55.
82. Birkmann A, Böck A. 1989. Characterisation of a cis regulatory DNA element necessary for formate induction of the formate dehydrogenase gene (fdhF) of Escherichia coli. Mol Microbiol 3:187-195.
83. Maier T, Jacobi A, Sauter M, Böck A. 1993. The product of the hypB gene, which is required for nickel incorporation into hydrogenases, is a novel guanine nucleotide-binding protein. J Bacteriol 175:630-635.
84. Hopper S, Babst M, Schlensog V, Fischer H-M, Hennecke H, Böck A. 1994. Regulated expression in vitro of genes coding for formate hydrogenlyase components of Escherichia coli. J Biol Chem 269:19597-19604.
85. Korsa I, Böck A. 1997. Characterization of fhlA mutations resulting in ligand-independent transcriptional activation and ATP hydrolysis. J Bacteriol 179:41-45.
86. Self WT, Hasona A, Shanmugam KT. 2004. Expression and regulation of a silent operon, hyf, coding for hydrogenase 4 isoenzyme in Escherichia coli. J Bacteriol 186:580-587.
87. Navarro C, Wu L-F, Mandrand-Berthelot M-A. 1993. The nik operon of Escherichia coli encodes a periplasmic binding-proteindependent transport sytem for nickel. Mol Microbiol 9:1181-1191.
88. Rossmann R, Sawers G, Böck A. 1991. Mechanism of regulation of the formate-hydrogenlyase pathway by oxygen, nitrate, and pH:definition of the formate regulon. Mol Microbiol 5:2807-2814.
89. Abaidou H, Giordano G, Mandrand-Berthelot M-A. 1997. Suppression of Escherichia coli formate hydrogenlyase activity by trimethylamine N-oxide is due to drainage of the inducer formate. Microbiology 143:2657-2664.
90. Waugh R, Boxer DH. 1986. Pleiotropic hydrogenase mutants of Escherichia coli K12: growth in the presence of nickel can restore hydrogenase activity. Biochimie 68:157-166.
91. Enoch HG, Lester RL. 1975. The purification and properties of formate dehydrogenase and nitrate reductase from Escherichia coli. J Biol Chem 250:6693-6705.
92. 54-dependent transcriptional activator FHLA from Escherichia coli. J Bacteriol 177:2798-2803.
93. Altuvia S, Zhang A, Argaman L, Tiwari A, Storz G. 1998. The Escherichia coli OxyS regulatory RNA represses fhlA translation by blocking ribosome binding. EMBO J 17:6069-6075.
94. Argaman L, Altuvia S. 2000. fhlA repression by OxyS RNA:kissing complex formation at two sites results in a stable antisensetarget RNA complex. J Mol Biol 300:1101-1112.
95. Olson JW, Maier RJ. 2000. Dual roles of Bradyrhizobium japonicum nickel in protein in nickel storage and GTP-dependent Ni mobilization. J Bacteriol 182:1702-1705.
96. De Pina K, Desjardin V, Mandrand-Berthelot M-A, Giordano G, Wu L-F. 1999. Isolation and characterization of the nikR gene encoding a nickel-responsive regulator in Escherichia coli. J Bacteriol 181:670-674.
97. Wu L-F, Mandrand-Berthelot M-A, Waugh R, Edmonds CJ, Holt SE, Boxer DH. 1989. Nickel deficiency gives rise to the defective hydrogenase phenotype of hydC and fnr mutants in Escherichia coli. Mol Microbiol 3:1709-1718.
98. Hasona A, Ray RM, Shanmugam KT. 1998. Physiological and genetic analysis leading to identification of a biochemical role for moeA (molybdate metabolism) gene product in Escherichia coli. J Bacteriol 180:1466-1472.
99. Self WT, Hasona A, Shanmugam KT. 2001. N-terminal truncations in the FHLA protein result in formate and MoeAindependent expression of the hyc (formate hydrogenlyase) operon of Escherichia coli. Microbiology 147:3093-3104.
100. Sankar P, Shanmugam KT. 1988. Biochemical and genetic analysis of hydrogen metabolism in Escherichia coli: the hydB gene. J Bacteriol 170:5433-5439.
101. Sankar P, Shanmugam KT. 1988. Hydrogen metabolism in Escherichia coli: biochemical and genetic evidence for a hydF gene. J Bacteriol 170:5446-5451.
102. Sargent F, Ballantine SP, Rugman PA, Palmer T, Boxer DH. 1998. Reassignment of the gene encoding the Escherichia coli hydrogenase 2 small subunit: identification of a soluble precursor of the small subunit in a hypB mutant. Eur J Biochem 255:746-s754.
103. Weiss H, Friedrich T, Hofhaus G, Preis D. 1991. The respiratory-chain NADH dehydrogenase complex I of mitochondria. Eur J Biochem 197:562-576.
104. Jacobi A, Rossmann R, Böck A. 1992. The hyp operon gene products are required for the maturation of catalytically active hydrogenase isoenzymes in Escherichia coli. Arch Microbiol 158:444-451.
105. Blokesch M, Magalon A, Böck A. 2001. Interplay between the specific chaperone-like proteins HybG and HypC in maturation of hydrogenases 1, 2, and 3 from Escherichia coli. J Bacteriol 183:2817-2822.
106. Maier T, Lottspeich F, Böck A. 1995. GTP hydrolysis by HypB is essential for nickel insertion into hydrogenases of Escherichia coli. Eur J Biochem 230:133-138.
107. 2 metabolism in Escherichia coli. J Bacteriol 162:353-360.
108. Frey M, Fontecilla-Camps JC, Volbeda A. 2001. Nickel-iron hydrogenases, p 880-896. In Messerschmidt A, Huber R, Poulos T, and Wieghardt K (ed), Handbook of Metalloproteins, vol. 2. John Wiley & Sons, Ltd., Chichester, United Kingdom.
109. Fontecilla-Camps JC, Frey M, Garcin E, Hatchikian C, Montet Y, Piras C, Vernede X, Volbeda A. 1997. Hydrogenase: a hydrogenmetabolizing enzyme. What do the crystal structures tell us about its mode of action? Biochimie 79:661-666.
110. Volbeda A, Garcin E, Piras C, de Lacey AL, Fernandez VM, Hatchikian EC, Frey M, Fontecilla-Camps JC. 1996. Structure of the [NiFe] hydrogenase active site: evidence for biologically uncommon Fe ligands. J Am Chem Soc 118:12989-12996.
111. Wang H, Gunsalus RP. 2003. Coordinate regulation of the Echerichia coli formate dehydrogenase fdnGHI and fdhF genes in response to nitrate, nitrite and formate: roles for NarL and NarP. J Bacteriol 185:5076-5085.
112. Bagley KA, Duin EC, Roseboom W, Albracht SPJ, Woodruff WH. 1995. Infrared-detectable groups sense changes in charge density on the nickel center in hydrogenase from Chromatium vinosum. Biochemistry 34:5527-5535.
113. Bagley KA, Van Garderen CJ, Chen M, Duin EC, Albracht SPJ, Woodruff WH. 1994. Infrared studies on the interaction of carbon monoxide with divalent nickel in hydrogenase from Chromatium vinosum. Biochemistry 33:9229-9236.
114. Happe RP, Roseboom W, Pierik AJ, Albracht SPJ, Bagley KA. 1997. Biological activation of hydrogen. Nature 385:126.
115. Theodoratou E, Paschos A, Magalon A, Fritsche E, Huber R, Böck A. 2000. Nickel serves as substrate recognition motif for the endopeptidase involved in hydrogenase maturation. Eur J Biochem 267:1995-1999.
116. Pinsent J. 1954. The need for selenite and molybdate in the formation of formic dehydrogenase by members of the coli-aerogenes. Biochem J 57:10-16.
117. Menon NK, Chatelus CY, Dervartanian M, Wendt JC, Shanmugam KT, Peck HD, Jr, Przybyla AE. 1994. Cloning, sequencing, and mutational analysis of the hyb operon encoding Escherichia coli hydrogenase 2. J Bacteriol 176:4416-4423.
118. Park KR, Giard J-C, Eom JH, Bearson S, Foster JW. 1999. Cyclic AMP receptor protein and TyrR are required for acid pH and anaerobic induction of hyaB and aniC in Salmonella typhimurium. J Bacteriol 181:689-694.
119. Mao Y, Varoglu M, Sherman DH. 1999. Molecular characterization and analysis of the biosynthetic gene cluster for the antitumor antibiotic mitomycin C from Streptomyces lavendulae NRRL 2564. Chem Biol 6:251-263.
120. Blokesch M, Böck A. 2002. Maturation of [NiFe]- hydrogenases in Escherichia coli: the HypC cycle. J Mol Biol 324:287-296.
121. Drapal N, Böck A. 1998. Interaction of the hydrogenase accessory protein HypC with HycE, the large subunit of Escherichia coli hydrogenase 3 during enzyme maturation. Biochemistry 37:2941-2948.
122. Magalon A, Böck A. 2000. Dissection of the maturation reactions of the [NiFe] hydrogenase 3 from Escherichia coli taking place after nickel incorporation. FEBS Lett 473:254-258.
123. Rey L, Imperial J, Palacios JM, Ruiz-Argüeso T. 1994. Purification of Rhizobium leguminosarum HypB, a nickel-binding protein required for hydrogenase synthesis. J Bacteriol 176:6066-6073.
124. Pecher A, Zinoni F, Böck A. 1985. The seleno-polypeptide of formic dehydrogenase (formate hydrogen-lyase linked) from Escherichia coli: genetic analysis. Arch Microbiol 141:359-363.
125. Paschos A, Bauer A, Zimmermann A, Zehelein E, Böck A. 2002. HypF, a carbamoyl phosphate-converting enzyme involved in [NiFe] hydrogenase maturation. J Biol Chem 277:49945-49951.
126. Wolf I, Buhrke T, Dernedde J, Pohlmann A, Friedrich B. 1998. Duplication of hyp genes involved in maturation of [NiFe] hydrogenases in Alcaligenes eutrophus H16. Arch Microbiol 170:451-459.
127. Blumer C, Haas D. 2000. Mechanism, regulation, and ecological role of bacterial cyanide biosynthesis. Arch Microbiol 173:170-177.
128. Knowles CJ. 1976. Microorganisms and cyanide. Bacteriol Rev 40:652-680.
129. Mehta N, Benoit S, Maier RJ. 2003. Roles of conserved nucleotide-binding domains in accessory proteins, HypB and UreG, in the maturation of nickel-enzymes required for efficient Helicobacter pylori colonization. Microb Pathog 35:229-234.
130. Stephenson M, Stickland LH. 1931. Hydrogenase: a bacterial enzyme activating molecular hydrogen. I. The properties of the enzyme. Biochem J 25:205-214.
131. Barrett EL, Kwan HS, Macy J. 1984. Anaerobiosis, formate, nitrate, and pyrA are involved in the regulation of formate hydrogenlyase in Salmonella typhimurium. J Bacteriol 158:972-977.
132. Steffensky M, Muhlenweg A, Wang ZX, Li SM, Heide L. 2000. Identification of the novobiocin biosynthetic gene cluster of Streptomyces spheroides NCIB 11891. Antimicrob Agents Chemother 44:1214-1222.
133. Wu L-F, Mandrand M-A. 1993. Microbial hydrogenases: primary structure, classification, signatures and phylogeny. FEMS Microbiol Rev 104:243-270.
134. Rosentel JK, Healy F, Maupin-Furlow JA, Lee JH, Shanmugam KT. 1995. Role of molybdate transport system(s) in the regulation of formate hydrogenlyase synthesis in Escherichia coli. J Bacteriol 177:4857-4864.
135. Frazzon J, Dean DR. 2003. Formation of iron-sulfur clusters in bacteria: an emerging field in bioinorganic chemistry. Curr Opin Chem Biol 7:166-173.
136. Maier T, Böck A. 1996. Nickel incorporation into hydrogenases, p 173-192. In Hausinger RP, Eichhorn GL, and Marzilli LG (ed), Mechanisms of Metallocenter Assembly. VCH, New York, N.Y.
137. Theodoratou E, Paschos A, Mintz-Weber S, Böck A. 2000. Analysis of the cleavage site specificity of the endopeptidase involved in the maturation of the large subunit of hydrogenase 3 from Escherichia coli. Arch Microbiol 173:110-116.
138. Fu C, Olson JW, Maier RJ. 1995. HypB protein of Bradyrhizobium japonicum is a metal-binding GTPase capable of binding 18 divalent nickel ions per dimer. Proc Natl Acad Sci USA 92:2333-2337.
139. Richard DJ, Sawers G, Sargent F, McWalter L, Boxer DH. 1999. Transcriptional regulation in response to oxygen and nitrate of the operons encoding the [NiFe] hydrogenases 1 and 2 of Escherichia coli. Microbiology 145:2903-2912.
140. Mehta N, Olson JW, Maier RJ. 2003. Characterization of Helicobacter pylori nickel metabolism accessory proteins needed for maturation of both urease and hydrogenase. J Bacteriol 185:726-734.
141. Olson JW, Mehta NS, Maier RJ. 2001. Requirement of nickel metabolism proteins HypA and HypB for full activity of both hydrogenase and urease in Helicobacter pylori. Mol Microbiol 39:176-182.
142. Gollin DJ, Mortenson LE, Robson RL. 1992. Carboxyl-terminal processing may be essential for production of active NiFe hydrogenase in Azotobacter vinelandii. FEBS Lett 309:371-375.
143. Maier T, Binder U, Böck A. 1996. Analysis of the hydA locus of Escherichia coli: two genes (hydN and hypF) involved in formate and hydrogen metabolism. Arch Microbiol 165:333-341.
144. Magalon A, Blokesch M, Zehelein E, Böck A. 2001. Fidelity of metal insertion into hydrogenases. FEBS Lett 499:73-76.
145. Maier T, Böck A. 1996. Generation of active [NiFe] hydrogenase in vitro from a nickel-free precursor form. Biochemistry 35:10089-10093.
146. Binder U, Maier T, Böck A. 1996. Nickel incorporation into hydrogenase 3 from Escherichia coli requires the precursor form of the large subunit. Arch Microbiol 165:69-72.
147. 2uptake hydrogenases. Arch Microbiol 161:1-10.
148. Rosano C, Zuccotti S, Bucciantini M, Stefani M, Ramponi G, Bolognesi M. 2002. Crystal structure and anion binding in the prokaryotic hydrogenase maturation factor HypF acylphosphatase-like domain. J Mol Biol 321:785-796.
149. Jamieson DJ, Sawers RG, Rugman PA, Boxer DH, Higgins CF. 1986. Effects of anaerobic regulatory mutations and catabolite repression on regulation of hydrogen metabolism and hydrogenase isoenzyme composition in Salmonella typhimurium. J Bacteriol 168:405-411.
150. Schindelin H, Kisker C, Hilton J, Rajagopalan KV, Rees DC. 1996. Crystal structure of DMSO reductase: redox-linked changes in molybdopterin coordination. Science 272:1615-1621.
151. Paschos A, Glass RS, Böck A. 2001. Carbamoyl phosphate requirement for synthesis of the active center of [NiFe]-hydrogenases. FEBS Lett 488:9-12.
152. Stewart V. 2003. Nitrate-and nitrite-responsive sensors NarX and NarQ of proteobacteria. Biochem Soc Trans 31:1-10.
153. Brewer CR, Werkman CH. 1939. The anaerobic dissimilation of citric acid by Aerobacter indologenes. Enzymologia 6:273-281.
154. Jones RW. 1980. Proton translocation by the membrane-bound formate dehydrogenase of Escherichia coli. FEMS Microbiol Lett 8:167-171.
155. Graham A. 1981. The organisation of hydrogenase in the cytoplasmic membrane of Escherichia coli. Biochem J 197:283-291.
156. Laurinavichene TV, Zorin NA, Tsygankov AA. 2002. Effect of redox potential on activity of hydrogenase 1 and hydrogenase 2 in Escherichia coli. Arch Microbiol 178:437-442.
157. Lee JH, Patel P, Sankar P, Shanmugam KT. 1985. Isolation and characterisation of mutant strains of Escherichia coli altered in hydrogen metabolism. J Bacteriol 162:344-352.
158. Clark DP. 1989. The fermentation pathways of Escherichia coli. FEMS Microbiol Rev 63:223-234.
159. Alam KY, Clark DP. 1989. Anaerobic fermentation balance of Escherichia coli as observed by in vivo nuclear magnetic resonance spectroscopy. J Bacteriol 171:6213-6217.