Deoxyribonucleic Acid for Nanopackaging: A promising bottom-up approach

IEEE Nanotechnology Magazine

Volumn 11, Issue 1, 2017, Pages 12-19

  Brun, Christophe ^a   Diagne, Cheikh Tidiane ^a   Elchinger, Pierre Henri ^a   Torrengo, Simona ^a   Thuaire, Aurelie ^a   Gasparutto, Didier ^b   Tiron, Raluca ^a   Baillin, Xavier ^a  

^a Laboratoire de Physiologie Cellulaire Vegetale Grenoble   (France)

^b CEA GRENOBLE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL MATERIALS; DNA; MICROELECTRONICS; ORGANIC ACIDS;

BOTTOM UP APPROACH; FUNCTIONALIZED; NANO SCALE; NANO-PACKAGING; NANOWIRES (NWS); SELF-ASSEMBLING; TOP DOWN APPROACHES;

NUCLEIC ACIDS;

EID: 85009901975     PISSN: 19324510     EISSN: None     Source Type: Journal    
DOI: 10.1109/MNANO.2016.2633679     Document Type: Article

References (50)

1. G. E. Moore, "Cramming more components onto integrated circuits," Proc. IEEE, vol. 86, no. 1, pp. 82-85, Jan. 1998.
2. Intel. 50 years of Moore's law. Intel. Santa Clara, CA. [Online]. Available: http://www.intel .com/content/www/us/en/silicon-innovations/moores-law-technology.html
3. P. Bai, "The present and future of Moore's law," in Proc. 2016 Int. Symp. VLSI Technology, Systems and Application, p. 1.
4. M. Neisser and S. Wurm, "ITRS lithography roadmap: 2015 challenges," Adv. Opt. Technol., vol. 4, pp. 235-240, 2015.
5. R. Dahm, "Friedrich Miescher and the discovery of DNA ," Dev. Biol., vol. 278, no. 2, pp. 274-288, Feb. 2005.
6. J. D. Watson and F. H. C. Crick, "Molecular structure of nucleic acids: A structure for deoxyribose nucleic acid," Nature, vol. 171, no. 4356, pp. 737-738, Apr. 1953.
7. A. R. Marks, "DNA : The secret of life," J. Clin. Invest., vol. 112, no. 7, p. 972, Oct. 2003.
8. C. R. Calladine, H. R. Drew, B. F. Luisi, and A. A. Travers, Understanding DNA: The Molecule and How It Works. New York: Academic, 2004.
9. H. Cohen, C. Nogues, R. Naaman, and D. Porath, "Direct measurement of electrical transport through single DNA molecules of complex sequence," Proc. Nat. Acad. Sci. U.S.A., vol. 102, no. 33, pp. 11589-11593, Aug. 2005.
10. J. Richter, "Metallization of DNA ," Phys. E, vol. 16, no. 2, pp. 157-173, Feb. 2003.
11. A. Filoramo, "DNA metallization processes and nanoelectronics," in Nanopackaging: From Nanomaterials to the Atomic Scale, X. Baillin, C. Joachim, and G. Poupon, Eds. New York: Springer-Verlag, 2015, pp. 17-32.
12. D. L. Daniels, J. L. Schroeder, W. Szybalski, F. Sanger, A. R. Coulson, G. F. Hong, D. F. Hill, G. B. Petersen, and F. R. Blattner, "Appendix II : Complete annotated lambda sequence," Cold Spring Harb. Monogr. Ser., vol. 13, pp. 519-676, Jan. 1983.
13. N. C. Seeman, "Nucleic acid junctions and lattices," J. Theor. Biol., vol. 99, no. 2, pp. 237-247, Nov. 1982.
14. C. Dwyer, L. Vicci, J. Poulton, D. Erie, R. Superfine, S. Washburn, and R. M. Taylor, "The design of DNA self-assembled computing circuitry," IEEE Trans. Very Large Scale Integr. (VLSI) Syst., vol. 12, no. 11, pp. 1214-1220, Nov. 2004.
15. Y. Benenson, B. Gil, U. Ben-Dor, R. Adar, and E. Shapiro, "An autonomous molecular computer for logical control of gene expression," Nature, vol. 429, no. 6990, May 2004.
16. R. M. Stoltenberg and A. T. Woolley, "DNA -templated nanowire fabrication," Biomed. Microdevices, vol. 6, no. 2, pp. 105-111, June 2004.
17. C. T. Diagne, C. Brun, D. Gasparutto, X. Baillin, and R. Tiron. (2016, June). DNA origami mask for sub-ten-nanometer lithography. ACS Nano. [Online]. 10(7), pp. 6458-6463. Available: http://pubs.acs.org/doi/abs/10.1021/acsnano.6b00413.
18. P. W. K. Rothemund, "Folding DNA to create nanoscale shapes and patterns," Nature, vol. 440, no. 7082, pp. 297-302, Mar. 2006.
19. P. W. K. Rothemund and E. S. Andersen, "Nanotechnology: The importance of being modular," Nature, vol. 485, no. 7400, pp. 584-585, May 2012.
20. C. E. Castro, F. Kilchherr, D. N. Kim, E. L. Shiao, T. Wauer, P. Wortmann, M. Bathe, and H. Dietz, "A primer to scaffolded DNA origami," Nat. Methods, vol. 8, no. 3, pp. 221-229, Mar. 2011.
21. E. Braun, Y. Eichen, U. Sivan, and G. Ben-Yoseph, "DNA -templated assembly and electrode attachment of a conducting silver wire," Nature, vol. 391, no. 6669, pp. 775-778, Feb. 1998.
22. J. Richter, M. Mertig, W. Pompe, I. M?nch, and H. K. Schackert, "Construction of highly conductive nanowires on a DNA template," Appl. Phys. Lett., vol. 78, no. 4, pp. 536-538, Jan. 2001.
23. C. J. F. Dupraz, P. Nickels, U. Beierlein, W. U. Huynh, and F. C. Simmel, "Towards molecularscale electronics and biomolecular self-assembly," Superlattices Microstruct., vol. 33, nos. 5-6, pp. 369-379, May 2003.
24. W. E. Ford, O. Harnack, A. Yasuda, and J. M. Wessels, "Platinated DNA as precursors to templated chains of metal nanoparticles," Adv. Mater., vol. 13, no. 23, pp. 1793-1797, Dec. 2001.
25. O. Harnack, W. E. Ford, A. Yasuda, and J. M. Wessels, "Tris(hydroxymethyl)phosphine-capped gold particles templated by DNA as nanowire precursors," Nano Lett., vol. 2, no. 9, pp. 919-923, Sept. 2002.
26. K. Keren, M. Krueger, R. Gilad, G. Ben-Yoseph, U. Sivan, and E. Braun, "Sequence-specif ic molecular lithography on single DNA molecules," Science, vol. 297, no. 5578, pp. 72-75, July 2002.
27. H. Yan, S. H. Park, G. Finkelstein, J. H. Reif, and T. H. LaBean, "DNA -templated self-assembly of protein arrays and highly conductive nanowires," Science, vol. 301, no. 5641, pp. 1882-1884, Sept. 2003.
28. K. Keren, R. S. Berman, E. Buchstab, U. Sivan, and E. Braun, "DNA -templated carbon nanotube field-effect transistor," Science, vol. 302, no. 5649, pp. 1380-1382, Nov. 2003.
29. K. Nguyen, M. Monteverde, A. Filoramo, L. Goux-Capes, S. Lyonnais, P. Jegou, P. Viel, M. Goffman, and J. P. Bourgoin, "Synthesis of thin and highly conductive DNA -based palladium nanowires," Adv. Mater., vol. 20, no. 6, pp. 1099-1104, Mar. 2008.
30. K. Nguyen, S. Campidelli, and A. Filoramo, "DNA -templated Pd conductive metallic nanowires," in DNA Nanotechnology, G. Zuccheri and B. Samor?, Eds. New York: Humana, 2011, pp. 49-59.
31. J. Pate, F. Zamora, S. M. D. Watson, N. G. Wright, B. R. Horrocks, and A. Houlton, "Solution-based DNA -templating of sub-10 nm conductive copper nanowires," J. Mater. Chem. C, vol. 2, no. 43, pp. 9265-9273, Oct. 2014.
32. J. Pate, "Fabrication and characterisation of DNA -templated copper nanowires," Ph.D. dissertation, Newcastle University, Newcastle upon Tyne, U.K., 2013.
33. J. Lund, J. Dong, Z. Deng, C. Mao, and B. A. Parviz, "Electrical conduction in 7 nm wires constructed on m-DNA ," Nanotechnology, vol. 17, no. 11, p. 2752, June 2006.
34. J. S. Hwang, S. W. Hwang, and D. Ahn, "Formation of electrical interconnects by self-trapping of DNA molecules," in Proc. 2003 Int. Microprocesses and Nanotechnology Conf., pp. 216-217.
35. J. F. Allemand, D. Bensimon, L. Jullien, A. Bensimon, and V. Croquette, "pH-dependent specific binding and combing of DNA ," Biophys. J., vol. 73, no. 4, pp. 2064-2070, Oct. 1997.
36. Z. Deng and C. Mao, "DNA -templated fabrication of 1D parallel and 2D crossed metallic nanowire arrays," Nano Lett., vol. 3, no. 11, pp. 1545-1548, Nov. 2003.
37. C. F. Monson and A. T. Woolley, "DNA -templated construction of copper nanowires," Nano Lett., vol. 3, no. 3, pp. 359-363, Feb. 2003.
38. H. Nakao, H. Shiigi, Y. Yamamoto, S. Tokonami, T. Nagaoka, S. Sugiyama, and T. Ohtani, "Highly ordered assemblies of Au nanoparticles organized on DNA ," Nano Lett., vol. 3, no. 10, pp. 1391-1394, Oct. 2003.
39. K. Keren, R. S. Berman, and E. Braun, "Patterned DNA metallization by sequence-specific localization of a reducing agent," Nano Lett., vol. 4, no. 2, pp. 323-326, Feb. 2004.
40. H. Z. Zheng, D. W. Pang, Z. X. Lu, Z. L. Zhang, and Z. X. Xie, "Combing DNA on CTAB -coated surfaces," Biophys. Chem., vol. 112, no. 1, pp. 27-33, Dec. 2004.
41. J. Liu, B. Uprety, S. Gyawali, A. T. Woolley, N. V. Myung, and J. N. Harb, "Fabrication of DNA -templated Te and Bi2Te3 nanowires by galvanic displacement," Langmuir, vol. 29, no. 35, pp. 11176-11184, 2013.
42. J. Guan and L. J. Lee, "Generating highly ordered DNA nanostrand arrays," Proc. Nat. Acad. Sci. U. S. A., vol. 102, no. 51, pp. 18321-18325, Dec. 2005.
43. H. J. Kim, Y. Roh, and B. Hong, "Selective alignment of gold nanowires synthesized with DNA as template by surface-patterning technique," IEEE Trans. Nanotechnol., vol. 9, no. 2, pp. 254-257, Mar. 2010.
44. E. Miele, A. Accardo, A. Falqui, M. Marini, A. Giugni, M. Leoncini, F. De Angelis, R. Krahne, and E. Di Fabrizio, "Writing and functionalisation of suspended DNA nanowires on superhydrophobic pillar arrays," Small, vol. 11, no. 1, pp. 134-140, 2015.
45. M. Moretti, T. Limongi, M. Marini, F. Gentile, A. Giugni, B. Torre, M. Allione, L. Tirinato, G. Das, G. Perozziello, P. Candeloro, and E. di Fabrizio, "Stable stretched suspended DNA molecules," Adv. Genet. Eng., vol. 5, p. i102, 2016.
46. G. Ciasca, M. Papi, V. Palmieri, M. Chiarpotto, S. Di Claudio, A. De Ninno, E. Giovine, G. Campi, A. Gerardino, L. Businaro, and M. De Spirito, "Controlling DNA bundle size and spatial arrangement in self-assembled arrays on superhydrophobic surface," Nano-Micro Lett., vol. 7, no. 2, pp. 146-151, 2015.
47. F. Gentile, M. Moretti, T. Limongi, A. Falqui, G. Bertoni, A. Scarpellini, S. Santoriello, L. Maragliano, R. Proietti Zaccaria, and E. di Fabrizio, "Direct imaging of DNA fibers: The visage of double helix," Nano Lett., vol. 12, no. 12, pp. 6453-6458, Dec. 2012.
48. G. L. Eichhorn and Y. A. Shin, "Interaction of metal ions with polynucleotides and related compounds. XII. The relative effect of various metal ions on DNA helicity," J. Amer. Chem. Soc., vol. 90, no. 26, pp. 7323-7328, Dec. 1968.
49. 2+ on the solution structure of calf thymus DNA : DNA condensation and denaturation studied by Fourier transform IR difference spectroscopy," Biopolymers, vol. 33, no. 12, pp. 1819-1827, Dec. 1993.
50. IB M100. (2012, Mar.). Copper interconnects: The evolution of microprocessors. IB M. Armonk, NY. [Online]. Available: http://www-03 .ibm.com/ibm/history/ibm100/us/en/icons/copperchip/