Microbiota-intestinal stem cells dialog: A key element for intestinal regeneration;Le dialogue microbiote-cellules souches

Medecine/Sciences

Volumn 32, Issue 11, 2016, Pages 983-990

  Stedman, Aline ^a   Nigro, Giulia ^a   Sansonetti, Philippe J ^a,b  

^a INSTITUT PASTEUR   (France)

^b l'alimentation et l'Environnement   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ADULT STEM CELL; ANIMAL; CELL COMMUNICATION; CYTOLOGY; HOMEOSTASIS; HUMAN; INTESTINE; INTESTINE FLORA; INTESTINE MUCOSA; MICROBIOLOGY; PHYSIOLOGY; REGENERATION;

ADULT STEM CELLS; ANIMALS; CELL COMMUNICATION; GASTROINTESTINAL MICROBIOME; HOMEOSTASIS; HUMANS; INTESTINAL MUCOSA; INTESTINES; REGENERATION;

EID: 85008391878     PISSN: 07670974     EISSN: 19585381     Source Type: Journal    
DOI: 10.1051/medsci/20163211014     Document Type: Review

References (53)

1. Sansonetti PJ. Host-bacteria homeostasis in the healthy and inflamed gut. Curr Opin Gastroenterol 2008; 24: 435-9.
2. Jakobsson HE, Piñeiro AR. The composition of the gut microbiota shapes the colon mucus barrier. EMBO Rep 2015; 16: 164-77.
3. Ulluwishewa D, Anderson RC, McNabb WC, et al. Regulation of tight junction permeability by intestinal bacteria and dietary components. J Nutr 2011; 141: 769-76.
4. Yamanaka T, Helgeland L, Farstad IN, et al. Microbial colonization drives lymphocyte accumulation and differentiation in the follicle-associated epithelium of Peyer's patches. J Immunol 2003; 170: 816-22.
5. Clarke TB, Davis KM, Lysenko ES, et al. Recognition of peptidoglycan from the microbiota by Nod1 enhances systemic innate immunity. Nat Med 2010; 16: 228-31.
6. Khosravi A, Yáñez A, Price JG, et al. Gut microbiota promote hematopoiesis to control bacterial infection. Cell Host Microbe 2014; 15: 374-81.
7. Shin SC, Kim SH, You H, et al. Drosophila microbiome modulates host developmental and metabolic homeostasis via insulin signaling. Science 2011; 334: 670-4.
8. Schwarzer M, Makki K, Storelli G, et al. Lactobacillus plantarum strain maintains growth of infant mice during chronic undernutrition. Science 2016; 351: 854-7.
9. Diaz Heijtz R, Wang S, Anuar F, et al. Normal gut microbiota modulates brain development and behavior. Proc Natl Acad Sci USA 2011; 108: 3047-52.
10. Bauer KC, Huus KE, Finlay BB. Microbes and the mind: emerging hallmarks of the gut microbiota-brain axis. Cell Microbiol 2016; 18: 632-44.
11. Sekirov I, Russell SL, Antunes LCM, et al. Gut microbiota in health and disease. Physiol Rev 2010; 90: 859-904.
12. Arora T, Bäckhed F. The gut microbiota and metabolic disease: current understanding and future perspectives. J Intern Med 2016; 280: 339-49.
13. Clevers H. The intestinal crypt, a prototype stem cell compartment. Cell 2013; 154: 274-84.
14. Tan DWM, Barker N. Intestinal stem cells and their defining niche. Curr Top Dev Biol 2014; 107: 77-107.
15. Sato T, Vries RG, Snippert HJ, et al. Single Lgr5 stem cells build crypt-villus structures in vitro without a mesenchymal niche. Nature 2009; 459: 262-5.
16. Kawai T, Akira S. Toll-like receptors and their crosstalk with other innate receptors in infection and immunity. Immunity 2011; 34: 637-50.
17. Rakoff-Nahoum S, Paglino J, Eslami-Varzaneh F, et al. Recognition of commensal microflora by toll-like receptors is required for intestinal homeostasis. Cell 2004; 118: 229-41.
18. Pull SL, Doherty JM, Mills JC, et al. Activated macrophages are an adaptive element of the colonic epithelial progenitor niche necessary for regenerative responses to injury. Proc Natl Acad Sci USA 2005; 102: 99-104.
19. Nigro G, Rossi R, Commere PH, et al. The cytosolic bacterial peptidoglycan sensor Nod2 affords stem cell protection and links microbes to gut epithelial regeneration. Cell Host Microbe 2014; 15: 792-8.
20. Zanello G, Goethel A, Rouquier S, et al. The cytosolic microbial receptor Nod2 regulates small intestinal crypt damage and epithelial regeneration following T cell-induced enteropathy. J Immunol 2016; 197: 345-55.
21. Swanson PA, Kumar A, Samarin S, et al. Enteric commensal bacteria potentiate epithelial restitution via reactive oxygen species-mediated inactivation of focal adhesion kinase phosphatases. Proc Natl Acad Sci USA 2011; 108: 8803-8.
22. Alam M, Midtvedt T, Uribe A. Differential cell kinetics in the ileum and colon of germfree rats. Scand J Gastroenterol 1994; 29: 445-51.
23. Reikvam DH, Erofeev A, Sandvik A, et al. Depletion of murine intestinal microbiota: effects on gut mucosa and epithelial gene expression. PLoS One 2011; 6: e17996.
24. Cheesman SE, Neal JT, Mittge E. Epithelial cell proliferation in the developing zebrafish intestine is regulated by the Wnt pathway and microbial signaling via Myd88. Proc Natl Acad Sci USA 2011; 108 (suppl 1): 4570-7.
25. Bonfini A, Liu X, Buchon N. From pathogens to microbiota: how drosophila intestinal stem cells react to gut microbes. Dev Comp Immunol 2016; 64: 22-38.
26. Wong CNA, Ng P, Douglas AE. Low-diversity bacterial community in the gut of the fruitfly Drosophila melanogaster. Environ Microbiol 2011; 13: 1889-900.
27. Micchelli CA, Perrimon N. Evidence that stem cells reside in the adult drosophila midgut epithelium. Nature 2006; 439: 475-9.
28. Jiang H, Patel PH, Kohlmaier A, et al. Cytokine/Jak/Stat signaling mediates regeneration and homeostasisin the drosophila midgut. Cell 2009; 137: 1343-55.
29. Buchon N, Broderick NA, Chakrabarti S, et al. Invasive and indigenous microbiota impact intestinal stem cell activity through multiple pathways in drosophila. Genes Dev 2009; 23: 2333-44.
30. Alam A, Leoni G, Wentworth CC, et al. Redox signaling regulates commensal-mediated mucosal homeostasis and restitution and requires formyl peptide receptor 1. Mucosal Immunol 2013; 7: 645-55.
31. Jones RM, Desai C, Darby TM, et al. Lactobacilli modulate epithelial cytoprotection through the Nrf2 pathway. Cell Reports 2015; 12: 1217-25.
32. Lindemans CA, Calafiore M, Mertelsmann AM, et al. Interleukin-22 promotes intestinal-stem-cellmediated epithelial regeneration. Nature 2015; 528: 560-4.
33. Sokol H, Seksik P. The intestinal microbiota in inflammatory bowel diseases: time to connect with the host. Curr Opin Gastroenterol 2010; 26: 327-31.
34. Sánchez de Medina F, Romero-Calvo I, Mascaraque C, et al. Intestinal inflammation and mucosal barrier function. Inflamm Bowel Dis 2014; 20: 2394-404.
35. Earle KA, Billings G, Sigal M, et al. Quantitative imaging of gut microbiota spatial organization. Cell Host Microbe 2015; 18: 478-88.
36. Pédron T, Sansonetti P. Commensals, bacterial pathogens and intestinal inflammation: an intriguing ménage à trois. Cell Host Microbe 2008; 3: 344-7.
37. Neal MD, Sodhi CP, Jia H, et al. Toll-like receptor 4 is expressed on intestinal stem cells and regulates their proliferation and apoptosis via the p53 up-regulated modulator of apoptosis. J Biol Chem 2012; 287: 37296-308
38. Ríos-Covián D, Ruas-Madiedo P, Margolles A, et al. Intestinal short chain fatty acids and their link with diet and human health. Front Microbiol 2016; 7: 2030.
39. Besten den G, van Eunen K, Groen AK, et al. The role of short-chain fatty acids in the interplay between diet, gut microbiota, and host energy metabolism. J Lipid Res 2013; 54: 2325-40.
40. Kaiko GE, Ryu SH, Koues OI, et al. The colonic crypt protects stem cells from microbiota-derived metabolites. Cell 2016; 165: 1708-20.
41. Matsuki T, Pédron T, Regnault B, et al. Epithelial cell proliferation arrest induced by lactate and acetate from Lactobacillus casei and Bifidobacterium breve. PLoS One 2013; 8: e63053.
42. Dutta D, Dobson AJ, Houtz PL, et al. Regional cell-specific transcriptome mapping reveals regulatory complexity in the adult drosophila midgut. Cell Rep 2015; 12: 346-58.
43. Larsson E, Tremaroli V, Lee YS, et al. Analysis of gut microbial regulation of host gene expression along the length of the gut and regulation of gut microbial ecology through MyD88. Gut 2012; 61: 1124-31.
44. Alenghat T, Osborne LC, Saenz SA, et al. Histone deacetylase 3 coordinates commensal-bacteria-dependent intestinal homeostasis. Nature 2014; 504: 153-7.
45. Yu DH, Gadkari M, Zhou Q, et al. Postnatal epigenetic regulation of intestinal stem cells requires DNA methylation and is guided by the microbiome. Genome Biol 2015; 16: 211.
46. Burberry A, Zeng MY, Ding L, et al. Infection mobilizes hematopoietic stem cells through cooperative NOD-like receptor and Toll-like receptor signaling. Cell Host Microbe 2014; 15: 779-91.
47. Gaboriau-Routhiau V, Cerf-Bensussan N. Microbiote intestinal et développement du système immunitaire. Med Sci (Paris) 2016; 32: 961-7.
48. Barbotin AL, Giacobini P, Prévot V. Le microbiote intestinal: clé de voûte entre l'obésité maternelle et les troubles de la socialisation chez la descendance. Med Sci (Paris) 2016; 32: 930-2.
49. Romagnolo B. Une relation Paneth entre cellules souches et niche intestinale. Med Sci (Paris) 2012; 28: 1058-60.
50. Storelli G, Leulier F. Croissance, sous-nutrition et microbiote: l'effet bénéfique de souches de Lactobacilles est conservé de la drosophile à la souris. Med Sci (Paris) 2016; 32: 925-9.
51. Lamas B, Richard ML, Sokol H. CARD9 et colite: un pont entre dysbiose et immunité. Med Sci (Paris) 2016; 32: 933-6.
52. Rahmouni O, Dubuquoy L, Desreumaux P, Neut C. Microbiote intestinal et développement des maladies inflammatoires chroniques de l'intestin. Med Sci (Paris) 2016; 32: 968-73.
53. Burcelin R, Nicolas S, Blasco-Baque V. Microbiotes et maladies métaboliques: de nouveaux concepts pour de nouvelles stratégies thérapeutiques. Med Sci (Paris) 2016; 32: 952-60.