-
1
-
-
72949091232
-
Bacterial community variation in human body habitats across space and time
-
Costello EK, Lauber CL, Hamady M, Fierer N, Gordon JI, et al. (2009) Bacterial community variation in human body habitats across space and time. Science 326: 1694-1697.
-
(2009)
Science
, vol.326
, pp. 1694-1697
-
-
Costello, E.K.1
Lauber, C.L.2
Hamady, M.3
Fierer, N.4
Gordon, J.I.5
-
2
-
-
44649129135
-
Commensals, bacterial pathogens and intestinal inflammation: an intriguing ménage à trois
-
Pédron T, Sansonetti PJ, (2008) Commensals, bacterial pathogens and intestinal inflammation: an intriguing ménage à trois. Cell Host Microbe 3: 344-347.
-
(2008)
Cell Host Microbe
, vol.3
, pp. 344-347
-
-
Pédron, T.1
Sansonetti, P.J.2
-
3
-
-
77955647582
-
Gut microbiota in health and disease
-
Sekirov I, Russell SL, Antunes LC, Finlay BB, (2010) Gut microbiota in health and disease. Physiol Rev 90: 859-904.
-
(2010)
Physiol Rev
, vol.90
, pp. 859-904
-
-
Sekirov, I.1
Russell, S.L.2
Antunes, L.C.3
Finlay, B.B.4
-
4
-
-
79959201412
-
Human nutrition, the gut microbiome and the immune system
-
Kau AL, Ahern PP, Griffin NW, Goodman AL, Gordon JI, (2011) Human nutrition, the gut microbiome and the immune system. Nature 474: 327-336.
-
(2011)
Nature
, vol.474
, pp. 327-336
-
-
Kau, A.L.1
Ahern, P.P.2
Griffin, N.W.3
Goodman, A.L.4
Gordon, J.I.5
-
5
-
-
79551680796
-
Enteric pathogen exploitation of the microbiota-generated nutrient environment of the gut
-
Keeney KM, Finlay BB, (2011) Enteric pathogen exploitation of the microbiota-generated nutrient environment of the gut. Curr Opin Microbiol 14: 92-98.
-
(2011)
Curr Opin Microbiol
, vol.14
, pp. 92-98
-
-
Keeney, K.M.1
Finlay, B.B.2
-
6
-
-
0019739604
-
Transit time of epithelial cells in the small intestines of germfree mice and ex-germfree mice associated with indigenous microorganisms
-
Savage DC, Siegel JE, Snellen JE, Whitt DD, (1981) Transit time of epithelial cells in the small intestines of germfree mice and ex-germfree mice associated with indigenous microorganisms. Appl Environ Microbiol 42: 996-1001.
-
(1981)
Appl Environ Microbiol
, vol.42
, pp. 996-1001
-
-
Savage, D.C.1
Siegel, J.E.2
Snellen, J.E.3
Whitt, D.D.4
-
7
-
-
0035793372
-
Molecular analysis of commensal host-microbial relationships in the intestine
-
Hooper LV, Wong MH, Thelin A, Hansson L, Falk PG, et al. (2001) Molecular analysis of commensal host-microbial relationships in the intestine. Science 291: 881-884.
-
(2001)
Science
, vol.291
, pp. 881-884
-
-
Hooper, L.V.1
Wong, M.H.2
Thelin, A.3
Hansson, L.4
Falk, P.G.5
-
8
-
-
77956094318
-
Creating and characterizing communities of human gut microbes in gnotobiotic mice
-
Faith JJ, Rey FE, O'Donnell D, Karlsson M, McNulty NP, et al. (2010) Creating and characterizing communities of human gut microbes in gnotobiotic mice. ISME J 4(9): 1094-1098.
-
(2010)
ISME J
, vol.4
, Issue.9
, pp. 1094-1098
-
-
Faith, J.J.1
Rey, F.E.2
O'Donnell, D.3
Karlsson, M.4
McNulty, N.P.5
-
9
-
-
79952384278
-
The role of gut microbiota (commensal bacteria) and the mucosal barrier in the pathogenesis of inflammatory and autoimmune diseases and cancer: contribution of germ-free and gnotobiotic animal models of human diseases
-
Tlaskalová-Hogenová H, Stěpánková R, Kozáková H, Hudcovic T, Vannucci L, et al. (2011) The role of gut microbiota (commensal bacteria) and the mucosal barrier in the pathogenesis of inflammatory and autoimmune diseases and cancer: contribution of germ-free and gnotobiotic animal models of human diseases. Cell Mol Immunol 8: 110-120.
-
(2011)
Cell Mol Immunol
, vol.8
, pp. 110-120
-
-
Tlaskalová-Hogenová, H.1
Stěpánková, R.2
Kozáková, H.3
Hudcovic, T.4
Vannucci, L.5
-
10
-
-
54349126459
-
Innate immune recognition of the indigenous microbial flora
-
Rakoff-Nahoum S, Medzhitov R, (2008) Innate immune recognition of the indigenous microbial flora. Mucosal Immunol 1Suppl 1: S10-S14.
-
(2008)
Mucosal Immunol
, vol.1
-
-
Rakoff-Nahoum, S.1
Medzhitov, R.2
-
11
-
-
79954667332
-
Intestinal microbiota, evolution of the immune system and the bad reputation of pro-inflammatory immunity
-
Ohnmacht C, Marques R, Presley L, Sawa S, Lochner M, et al. (2011) Intestinal microbiota, evolution of the immune system and the bad reputation of pro-inflammatory immunity. Cell Microbiol 13: 653-659.
-
(2011)
Cell Microbiol
, vol.13
, pp. 653-659
-
-
Ohnmacht, C.1
Marques, R.2
Presley, L.3
Sawa, S.4
Lochner, M.5
-
12
-
-
30744462290
-
Anti-inflammatory effect of Lactobacillus casei on Shigella-infected human intestinal epithelial cells
-
Tien MT, Girardin SE, Regnault B, Le Bourhis L, Dillies MA, et al. (2006) Anti-inflammatory effect of Lactobacillus casei on Shigella-infected human intestinal epithelial cells. J Immunol 176: 1228-1237.
-
(2006)
J Immunol
, vol.176
, pp. 1228-1237
-
-
Tien, M.T.1
Girardin, S.E.2
Regnault, B.3
Le Bourhis, L.4
Dillies, M.A.5
-
13
-
-
0038499524
-
A new method for determining the status of p53 in tumor cell lines of different origin
-
Gartel AL, Feliciano C, Tyner AL, (2003) A new method for determining the status of p53 in tumor cell lines of different origin. Oncol Res 13: 405-408.
-
(2003)
Oncol Res
, vol.13
, pp. 405-408
-
-
Gartel, A.L.1
Feliciano, C.2
Tyner, A.L.3
-
14
-
-
0029769296
-
Transimmortalized mouse intestinal cells (m-ICcl2) that maintain a crypt phenotype
-
Bens M, Bogdanova A, Cluzeaud F, Miquerol L, Kerneis S, et al. (1996) Transimmortalized mouse intestinal cells (m-ICcl2) that maintain a crypt phenotype. Am J Physiol 270: C1666-C1674.
-
(1996)
Am J Physiol
, vol.270
-
-
Bens, M.1
Bogdanova, A.2
Cluzeaud, F.3
Miquerol, L.4
Kerneis, S.5
-
15
-
-
0025944505
-
The polymeric immunoglobulin receptor (secretory component) mediates transport of immune complexes across epithelial cells: a local defense function for IgA
-
Kaetzel CS, Robinson JK, Chintalacharuvu KR, Vaerman JP, Lamm ME, (1991) The polymeric immunoglobulin receptor (secretory component) mediates transport of immune complexes across epithelial cells: a local defense function for IgA. Proc Natl Acad Sci U S A 88: 8796-8800.
-
(1991)
Proc Natl Acad Sci U S A
, vol.88
, pp. 8796-8800
-
-
Kaetzel, C.S.1
Robinson, J.K.2
Chintalacharuvu, K.R.3
Vaerman, J.P.4
Lamm, M.E.5
-
16
-
-
0037756822
-
Anti-inflammatory role for intracellular dimeric immunoglobulin a by neutralization of lipopolysaccharide in epithelial cells
-
Fernandez MI, Pédron T, Tournebize R, Olivo-Marin JC, Sansonetti PJ, et al. (2003) Anti-inflammatory role for intracellular dimeric immunoglobulin a by neutralization of lipopolysaccharide in epithelial cells. Immunity 18: 739-749.
-
(2003)
Immunity
, vol.18
, pp. 739-749
-
-
Fernandez, M.I.1
Pédron, T.2
Tournebize, R.3
Olivo-Marin, J.C.4
Sansonetti, P.J.5
-
17
-
-
18944375672
-
Long-term exposure of the HT-29 human intestinal epithelial cell line to TNF causes sustained up-regulation of the polymeric Ig receptor and proinflammatory genes through transcriptional and posttranscriptional mechanisms
-
Bruno ME, Kaetzel CS, (2005) Long-term exposure of the HT-29 human intestinal epithelial cell line to TNF causes sustained up-regulation of the polymeric Ig receptor and proinflammatory genes through transcriptional and posttranscriptional mechanisms. J Immunol 174: 7278-7284.
-
(2005)
J Immunol
, vol.174
, pp. 7278-7284
-
-
Bruno, M.E.1
Kaetzel, C.S.2
-
18
-
-
22544476811
-
Differentiation-dependent activation of the human intestinal alkaline phosphatase promoter by HNF-4 in intestinal cells
-
Olsen L, Bressendorff S, Troelsen JT, Olsen J, (2005) Differentiation-dependent activation of the human intestinal alkaline phosphatase promoter by HNF-4 in intestinal cells. Am J Physiol Gastrointest Liver Physiol 289: G220-G226.
-
(2005)
Am J Physiol Gastrointest Liver Physiol
, vol.289
-
-
Olsen, L.1
Bressendorff, S.2
Troelsen, J.T.3
Olsen, J.4
-
19
-
-
84857222449
-
Regulation of monocarboxylate transporter MCT1 expression by p53 mediates inward and outward lactate fluxes in tumors
-
Boidot R, Végran F, Meulle A, Le Breton A, Dessy C, et al. (2012) Regulation of monocarboxylate transporter MCT1 expression by p53 mediates inward and outward lactate fluxes in tumors. Cancer Res 72: 939-948.
-
(2012)
Cancer Res
, vol.72
, pp. 939-948
-
-
Boidot, R.1
Végran, F.2
Meulle, A.3
Le Breton, A.4
Dessy, C.5
-
20
-
-
14644392194
-
Cyclomodulins: bacterial effectors that modulate the eukaryotic cell cycle
-
Nougayrède JP, Taieb F, De Rycke J, Oswald E, (2005) Cyclomodulins: bacterial effectors that modulate the eukaryotic cell cycle. Trends Microbiol 13: 103-110.
-
(2005)
Trends Microbiol
, vol.13
, pp. 103-110
-
-
Nougayrède, J.P.1
Taieb, F.2
De Rycke, J.3
Oswald, E.4
-
21
-
-
13444274558
-
Bacterial toxins that modulate host cell-cycle progression
-
Oswald E, Nougayrède JP, Taieb F, Sugai M, (2005) Bacterial toxins that modulate host cell-cycle progression. Curr Opin Microbiol 8: 83-91.
-
(2005)
Curr Opin Microbiol
, vol.8
, pp. 83-91
-
-
Oswald, E.1
Nougayrède, J.P.2
Taieb, F.3
Sugai, M.4
-
22
-
-
78650291791
-
Cell cycle arrest induced by the bacterial adenylate cyclase toxins from Bacillus anthracis and Bordetella pertussis
-
Gray MC, Hewlett EL, (2011) Cell cycle arrest induced by the bacterial adenylate cyclase toxins from Bacillus anthracis and Bordetella pertussis. Cell Microbiol 13: 123-134.
-
(2011)
Cell Microbiol
, vol.13
, pp. 123-134
-
-
Gray, M.C.1
Hewlett, E.L.2
-
23
-
-
40749159702
-
Subtilase cytotoxin, produced by Shiga-toxigenic Escherichia coli, transiently inhibits protein synthesis of Vero cells via degradation of BiP and induces cell cycle arrest at G1 by downregulation of cyclin D1
-
Morinaga N, Yahiro K, Matsuura G, Moss J, Noda M, (2008) Subtilase cytotoxin, produced by Shiga-toxigenic Escherichia coli, transiently inhibits protein synthesis of Vero cells via degradation of BiP and induces cell cycle arrest at G1 by downregulation of cyclin D1. Cell Microbiol 10: 921-929.
-
(2008)
Cell Microbiol
, vol.10
, pp. 921-929
-
-
Morinaga, N.1
Yahiro, K.2
Matsuura, G.3
Moss, J.4
Noda, M.5
-
24
-
-
33747137269
-
Escherichia coli induces DNA double-strand breaks in eukaryotic cells
-
Nougayrède JP, Homburg S, Taieb F, Boury M, Brzuszkiewicz E, et al. (2006) Escherichia coli induces DNA double-strand breaks in eukaryotic cells. Science 313: 848-851.
-
(2006)
Science
, vol.313
, pp. 848-851
-
-
Nougayrède, J.P.1
Homburg, S.2
Taieb, F.3
Boury, M.4
Brzuszkiewicz, E.5
-
25
-
-
70350439157
-
Genetic structure and distribution of the colibactin genomic island among members of the family Enterobacteriaceae
-
Putze J, Hennequin C, Nougayrède JP, Zhang W, Homburg S, et al. (2009) Genetic structure and distribution of the colibactin genomic island among members of the family Enterobacteriaceae. Infect Immun 77: 4696-4703.
-
(2009)
Infect Immun
, vol.77
, pp. 4696-4703
-
-
Putze, J.1
Hennequin, C.2
Nougayrède, J.P.3
Zhang, W.4
Homburg, S.5
-
26
-
-
70349199875
-
Cif type III effector protein: a smart hijacker of the host cell cycle
-
Samba-Louaka A, Taieb F, Nougayrède JP, Oswald E, (2009) Cif type III effector protein: a smart hijacker of the host cell cycle. Future Microbiol 4: 867-877.
-
(2009)
Future Microbiol
, vol.4
, pp. 867-877
-
-
Samba-Louaka, A.1
Taieb, F.2
Nougayrède, J.P.3
Oswald, E.4
-
27
-
-
34547937914
-
A bacterial effector targets Mad2L2, an APC inhibitor, to modulate host cell cycling
-
Iwai H, Kim M, Yoshikawa Y, Ashida H, Ogawa M, et al. (2007) A bacterial effector targets Mad2L2, an APC inhibitor, to modulate host cell cycling. Cell. 130: 611-623.
-
(2007)
Cell
, vol.130
, pp. 611-623
-
-
Iwai, H.1
Kim, M.2
Yoshikawa, Y.3
Ashida, H.4
Ogawa, M.5
-
28
-
-
0037373880
-
Induction of gastric epithelial cell apoptosis by Helicobacter pylori vacuolating cytotoxin
-
Cover TL, Krishna US, Israel DA, Peek RM Jr, (2003) Induction of gastric epithelial cell apoptosis by Helicobacter pylori vacuolating cytotoxin. Cancer Res. 63: 951-957.
-
(2003)
Cancer Res
, vol.63
, pp. 951-957
-
-
Cover, T.L.1
Krishna, U.S.2
Israel, D.A.3
Peek Jr., R.M.4
-
29
-
-
33749579640
-
Mechanisms for Helicobacter pylori CagA-induced cyclin D1 expression that affect cell cycle
-
Chang YJ, Wu MS, Lin JT, Pestell RG, Blaser MJ, et al. (2006) Mechanisms for Helicobacter pylori CagA-induced cyclin D1 expression that affect cell cycle. Cell Microbiol 8: 1740-1752.
-
(2006)
Cell Microbiol
, vol.8
, pp. 1740-1752
-
-
Chang, Y.J.1
Wu, M.S.2
Lin, J.T.3
Pestell, R.G.4
Blaser, M.J.5
-
30
-
-
77957284568
-
Lactobacilli as multifaceted probiotics with poorly disclosed molecular mechanisms
-
Turpin W, Humblot C, Thomas M, Guyot JP, (2010) Lactobacilli as multifaceted probiotics with poorly disclosed molecular mechanisms. Int J Food Microbiol 143: 87-102.
-
(2010)
Int J Food Microbiol
, vol.143
, pp. 87-102
-
-
Turpin, W.1
Humblot, C.2
Thomas, M.3
Guyot, J.P.4
-
31
-
-
80052290325
-
The intestinal microbiota, gastrointestinal environment and colorectal cancer: a putative role for probiotics in prevention of colorectal cancer?
-
Azcárate-Peril MA, Sikes M, Bruno-Bárcena JM, (2011) The intestinal microbiota, gastrointestinal environment and colorectal cancer: a putative role for probiotics in prevention of colorectal cancer? Am J Physiol Gastrointest Liver Physiol 301: G401-G424.
-
(2011)
Am J Physiol Gastrointest Liver Physiol
, vol.301
-
-
Azcárate-Peril, M.A.1
Sikes, M.2
Bruno-Bárcena, J.M.3
-
32
-
-
0142157000
-
Intracellular recognition of lipopolysaccharide by toll-like receptor 4 in intestinal epithelial cells
-
Hornef MW, Normark BH, Vandewalle A, Normark S, (2003) Intracellular recognition of lipopolysaccharide by toll-like receptor 4 in intestinal epithelial cells. J Exp Med 198: 1225-1235.
-
(2003)
J Exp Med
, vol.198
, pp. 1225-1235
-
-
Hornef, M.W.1
Normark, B.H.2
Vandewalle, A.3
Normark, S.4
-
33
-
-
0028966179
-
Extracellular pH regulation in microdomains of colonic crypts: effects of short-chain fatty acids
-
Chu S, Montrose MH, (1995) Extracellular pH regulation in microdomains of colonic crypts: effects of short-chain fatty acids. Proc Natl Acad Sci U S A 92: 3303-3307.
-
(1995)
Proc Natl Acad Sci U S A
, vol.92
, pp. 3303-3307
-
-
Chu, S.1
Montrose, M.H.2
-
34
-
-
55949091259
-
Effects of the gut microbiota on host adiposity are modulated by the short-chain fatty-acid binding G protein-coupled receptor, Gpr41
-
Samuel BS, Shaito A, Motoike T, Rey FE, Backhed F, et al. (2008) Effects of the gut microbiota on host adiposity are modulated by the short-chain fatty-acid binding G protein-coupled receptor, Gpr41. Proc Natl Acad Sci U S A 105: 16767-16772.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 16767-16772
-
-
Samuel, B.S.1
Shaito, A.2
Motoike, T.3
Rey, F.E.4
Backhed, F.5
-
36
-
-
0025321505
-
Energy contributions of volatile fatty acids from the gastrointestinal tract in various species
-
Bergman EN, (1990) Energy contributions of volatile fatty acids from the gastrointestinal tract in various species. Physiol Rev 70: 567-590.
-
(1990)
Physiol Rev
, vol.70
, pp. 567-590
-
-
Bergman, E.N.1
-
37
-
-
0021349077
-
The contribution of the large intestine to energy supplies in man
-
McNeil NI, (1984) The contribution of the large intestine to energy supplies in man. Am J Clin Nutr 39: 338-342.
-
(1984)
Am J Clin Nutr
, vol.39
, pp. 338-342
-
-
McNeil, N.I.1
-
38
-
-
48649087037
-
Inhibition of histone-deacetylase activity by short-chain fatty acids and some polyphenol metabolites formed in the colon
-
Waldecker M, Kautenburger T, Daumann H, Busch C, Schrenk D, (2008) Inhibition of histone-deacetylase activity by short-chain fatty acids and some polyphenol metabolites formed in the colon. J Nutr Biochem 19: 587-593.
-
(2008)
J Nutr Biochem
, vol.19
, pp. 587-593
-
-
Waldecker, M.1
Kautenburger, T.2
Daumann, H.3
Busch, C.4
Schrenk, D.5
-
39
-
-
44349149886
-
Butyrate and Wnt signaling: a possible solution to the puzzle of dietary fiber and colon cancer risk?
-
Bordonaro M, Lazarova DL, Sartorelli AC, (2008) Butyrate and Wnt signaling: a possible solution to the puzzle of dietary fiber and colon cancer risk? Cell Cycle 7: 1178-1183.
-
(2008)
Cell Cycle
, vol.7
, pp. 1178-1183
-
-
Bordonaro, M.1
Lazarova, D.L.2
Sartorelli, A.C.3
-
40
-
-
79251584066
-
Bifidobacteria can protect from enteropathogenic infection through production of acetate
-
Fukuda S, Toh H, Hase K, Oshima K, Nakanishi Y, et al. (2011) Bifidobacteria can protect from enteropathogenic infection through production of acetate. Nature 469: 543-547.
-
(2011)
Nature
, vol.469
, pp. 543-547
-
-
Fukuda, S.1
Toh, H.2
Hase, K.3
Oshima, K.4
Nakanishi, Y.5
-
42
-
-
0027165564
-
Relationship of colonic luminal short-chain fatty acids and pH to in vivo cell proliferation in rats
-
Lupton JR, Kurtz PP, (1993) Relationship of colonic luminal short-chain fatty acids and pH to in vivo cell proliferation in rats. J Nutr 123: 1522-1530.
-
(1993)
J Nutr
, vol.123
, pp. 1522-1530
-
-
Lupton, J.R.1
Kurtz, P.P.2
-
43
-
-
0024593744
-
Characterization of the human colon carcinoma cell line (Caco-2) as a model system for intestinal epithelial permeability
-
Hidalgo IJ, Raub TJ, Borchardt RT, (1989) Characterization of the human colon carcinoma cell line (Caco-2) as a model system for intestinal epithelial permeability. Gastroenterology 96(3): 736-749.
-
(1989)
Gastroenterology
, vol.96
, Issue.3
, pp. 736-749
-
-
Hidalgo, I.J.1
Raub, T.J.2
Borchardt, R.T.3
-
44
-
-
77957307220
-
Effects of a probiotic fermented milk beverage containing Lactobacillus casei strain Shirota on defecation frequency, intestinal microbiota, and the intestinal environment of healthy individuals with soft stools
-
Matsumoto K, Takada T, Shimizu K, Moriyama K, Kawakami K, et al. (2006) Effects of a probiotic fermented milk beverage containing Lactobacillus casei strain Shirota on defecation frequency, intestinal microbiota, and the intestinal environment of healthy individuals with soft stools. J Biosci Bioeng 110: 547-552.
-
(2006)
J Biosci Bioeng
, vol.110
, pp. 547-552
-
-
Matsumoto, K.1
Takada, T.2
Shimizu, K.3
Moriyama, K.4
Kawakami, K.5
-
45
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, et al. (2003) Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4: 249-264.
-
(2003)
Biostatistics
, vol.4
, pp. 249-264
-
-
Irizarry, R.A.1
Hobbs, B.2
Collin, F.3
Beazer-Barclay, Y.D.4
Antonellis, K.J.5
-
46
-
-
0035793042
-
Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection
-
Li C, Wong WH, (2001) Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection. Proc Natl Acad Sci U S A 98: 31-36.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 31-36
-
-
Li, C.1
Wong, W.H.2
-
47
-
-
44949231424
-
Analyzing real-time PCR data by the comparative C(T) method
-
Schmittgen TD, Livak KJ, (2008) Analyzing real-time PCR data by the comparative C(T) method. Nat Protoc 3: 1101-1108.
-
(2008)
Nat Protoc
, vol.3
, pp. 1101-1108
-
-
Schmittgen, T.D.1
Livak, K.J.2
-
48
-
-
0014949207
-
Cleavage of structural proteins during the assembly of the head of bacteriophage T4
-
Laemmli UK, (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227: 680-685.
-
(1970)
Nature
, vol.227
, pp. 680-685
-
-
Laemmli, U.K.1
|