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Volumn 91, Issue 1, 2017, Pages

Influenza A viruses of swine (IAV-S) in Vietnam from 2010 to 2015: Multiple introductions of A(H1N1)pdm09 viruses into the pig population and diversifying genetic constellations of enzootic IAV-S

Author keywords

Influenza; Phylogeny; Pig; Reassortment; Vietnam

Indexed keywords

ADAPTATION; ARTICLE; CONTROLLED STUDY; GENE SEQUENCE; GENETIC REASSORTMENT; GENETIC VARIABILITY; GENOTYPE; H3 GENE; INFLUENZA A (H1N1); INFLUENZA A VIRUS (H1N1); INFLUENZA A VIRUS (H1N2); INFLUENZA A VIRUS (H3N2); M GENE; N2 GENE; NONHUMAN; NORTH AMERICAN; PHYLOGENY; PRIORITY JOURNAL; SWINE DISEASE; URBAN AREA; VIET NAM; VIRAL GENETICS; VIRUS CELL INTERACTION; VIRUS CLASSIFICATION; VIRUS GENE; VIRUS GENOME; VIRUS ISOLATION; VIRUS STRAIN; VIRUS TRANSMISSION; ANIMAL; BAYES THEOREM; CLASSIFICATION; EPIDEMIOLOGICAL MONITORING; GENETIC VARIATION; GENETICS; HIGH THROUGHPUT SEQUENCING; HUMAN; MARKOV CHAIN; MONTE CARLO METHOD; ORTHOMYXOVIRIDAE INFECTIONS; PIG; SWINE DISEASES; TRANSMISSION; VETERINARY; VIROLOGY;

EID: 85008198155     PISSN: 0022538X     EISSN: 10985514     Source Type: Journal    
DOI: 10.1128/JVI.01490-16     Document Type: Article
Times cited : (30)

References (47)
  • 1
    • 0002542807 scopus 로고    scopus 로고
    • Swine influenza
    • Straw BE, D'Allaire S, Mengling WL, Taylor DJ (ed), Iowa State University Press, Ames, IA
    • Easterday BC, Van Reeth K. 1999. Swine influenza, p 277-290. In Straw BE, D'Allaire S, Mengling WL, Taylor DJ (ed), Diseases of swine, 8th ed. Iowa State University Press, Ames, IA.
    • (1999) Diseases of swine, 8th ed , pp. 277-290
    • Easterday, B.C.1    Van Reeth, K.2
  • 2
    • 0020520729 scopus 로고
    • Receptor determinants of human and animal influenza virus isolates: differences in receptor specificity of the H3 hemagglutinin based on species of origin
    • Rogers GN, Paulson JC. 1983. Receptor determinants of human and animal influenza virus isolates: differences in receptor specificity of the H3 hemagglutinin based on species of origin. Virology 127:361-373. https://doi.org/10.1016/0042-6822(83)90150-2.
    • (1983) Virology , vol.127 , pp. 361-373
    • Rogers, G.N.1    Paulson, J.C.2
  • 4
    • 33645278326 scopus 로고    scopus 로고
    • Avian flu: influenza virus receptors in the human airway
    • Shinya K, Ebina M, Yamada S, Ono M, Kasai N, Kawaoka Y. 2006. Avian flu: influenza virus receptors in the human airway. Nature 440:435-436. https://doi.org/10.1038/440435a.
    • (2006) Nature , vol.440 , pp. 435-436
    • Shinya, K.1    Ebina, M.2    Yamada, S.3    Ono, M.4    Kasai, N.5    Kawaoka, Y.6
  • 5
    • 79951787652 scopus 로고    scopus 로고
    • N-glycans from porcine trachea and lung: predominant NeuAcα2-6Gal could be a selective pressure for influenza variants in favor of human-type receptor
    • Sriwilaijaroen N, Kondo S, Yagi H, Takemae N, Saito T, Hiramatsu H, Kato K, Suzuki Y. 2011. N-glycans from porcine trachea and lung: predominant NeuAcα2-6Gal could be a selective pressure for influenza variants in favor of human-type receptor. PLoS One 6:e16302. https://doi.org/10.1371/journal.pone.0016302.
    • (2011) PLoS One , vol.6
    • Sriwilaijaroen, N.1    Kondo, S.2    Yagi, H.3    Takemae, N.4    Saito, T.5    Hiramatsu, H.6    Kato, K.7    Suzuki, Y.8
  • 6
    • 0000881511 scopus 로고
    • A practical method for field diagnosis of swine diseases
    • Koen JS. 1919. A practical method for field diagnosis of swine diseases. Am J Vet Med 14:468-470.
    • (1919) Am J Vet Med , vol.14 , pp. 468-470
    • Koen, J.S.1
  • 8
    • 84893059551 scopus 로고    scopus 로고
    • Genetics, evolution, and the zoonotic capacity of European swine influenza viruses
    • Zell R, Scholtissek C, Ludwig S. 2013. Genetics, evolution, and the zoonotic capacity of European swine influenza viruses. Curr Top Microbiol Immunol 370:29-55. https://doi.org/10.1007/82_2012_267.
    • (2013) Curr Top Microbiol Immunol , vol.370 , pp. 29-55
    • Zell, R.1    Scholtissek, C.2    Ludwig, S.3
  • 9
    • 0027319691 scopus 로고
    • Genetic reassortment between avian and human influenza A viruses in Italian pigs
    • Castrucci MR, Donatelli I, Sidoli L, Barigazzi G, Kawaoka Y, Webster RG. 1993 Genetic reassortment between avian and human influenza A viruses in Italian pigs. Virology 193:503-506. https://doi.org/10.1006/viro.1993.1155.
    • (1993) Virology , vol.193 , pp. 503-506
    • Castrucci, M.R.1    Donatelli, I.2    Sidoli, L.3    Barigazzi, G.4    Kawaoka, Y.5    Webster, R.G.6
  • 15
  • 16
    • 34547483403 scopus 로고    scopus 로고
    • Serologic and genetic characterization of North American H3N2 swine influenza A viruses
    • Gramer MR, Lee JH, Choi YK, Goyal SM, Joo HS. 2007. Serologic and genetic characterization of North American H3N2 swine influenza A viruses. Can J Vet Res 71:201-206.
    • (2007) Can J Vet Res , vol.71 , pp. 201-206
    • Gramer, M.R.1    Lee, J.H.2    Choi, Y.K.3    Goyal, S.M.4    Joo, H.S.5
  • 18
    • 72549084898 scopus 로고    scopus 로고
    • Characterization of a newly emerged genetic cluster of H1N1 and H1N2 swine influenza virus in the United States
    • Vincent A, Ma W, Lager K, Gramer M, Richt J, Janke B. 2009. Characterization of a newly emerged genetic cluster of H1N1 and H1N2 swine influenza virus in the United States. Virus Genes 39:176-185. https://doi.org/10.1007/s11262-009-0386-6.
    • (2009) Virus Genes , vol.39 , pp. 176-185
    • Vincent, A.1    Ma, W.2    Lager, K.3    Gramer, M.4    Richt, J.5    Janke, B.6
  • 19
    • 80053947748 scopus 로고    scopus 로고
    • Reassortment events among swine influenza A viruses in China: implications for the origin of the 2009 influenza pandemic
    • Lam TT-Y, Zhu H, Wang J, Smith DK, Holmes EC, Webster RG, Webby R, Peiris JM, Guan Y. 2011. Reassortment events among swine influenza A viruses in China: implications for the origin of the 2009 influenza pandemic. J Virol 85:10279-10285. https://doi.org/10.1128/JVI.05262-11.
    • (2011) J Virol , vol.85 , pp. 10279-10285
    • Lam, T.T.-Y.1    Zhu, H.2    Wang, J.3    Smith, D.K.4    Holmes, E.C.5    Webster, R.G.6    Webby, R.7    Peiris, J.M.8    Guan, Y.9
  • 23
    • 84866342594 scopus 로고    scopus 로고
    • Global transmission of influenza viruses from humans to swine
    • Nelson M, Gramer M, Vincent A, Holmes EC. 2012. Global transmission of influenza viruses from humans to swine. J Gen Virol 93:2195-2203. https://doi.org/10.1099/vir.0.044974-0.
    • (2012) J Gen Virol , vol.93 , pp. 2195-2203
    • Nelson, M.1    Gramer, M.2    Vincent, A.3    Holmes, E.C.4
  • 24
    • 84867204666 scopus 로고    scopus 로고
    • Isolation of the pandemic (H1N1) 2009 virus and its reassortant with an H3N2 swine influenza virus from healthy weaning pigs in Thailand in 2011
    • Hiromoto Y, Parchariyanon S, Ketusing N, Netrabukkana P, Hayashi T, Kobayashi T, Takemae N, Saito T. 2012. Isolation of the pandemic (H1N1) 2009 virus and its reassortant with an H3N2 swine influenza virus from healthy weaning pigs in Thailand in 2011. Virus Res 169:175-181. https://doi.org/10.1016/j.virusres.2012.07.025.
    • (2012) Virus Res , vol.169 , pp. 175-181
    • Hiromoto, Y.1    Parchariyanon, S.2    Ketusing, N.3    Netrabukkana, P.4    Hayashi, T.5    Kobayashi, T.6    Takemae, N.7    Saito, T.8
  • 25
    • 84901985941 scopus 로고    scopus 로고
    • Reassortant swine influenza viruses isolated in Japan contain genes from pandemic A(H1N1) 2009
    • Kanehira K, Takemae N, Uchida Y, Hikono H, Saito T. 2014. Reassortant swine influenza viruses isolated in Japan contain genes from pandemic A(H1N1) 2009. Microbiol Immunol 58:327-341. https://doi.org/10.1111/1348-0421.12152.
    • (2014) Microbiol Immunol , vol.58 , pp. 327-341
    • Kanehira, K.1    Takemae, N.2    Uchida, Y.3    Hikono, H.4    Saito, T.5
  • 26
    • 84863122315 scopus 로고    scopus 로고
    • Emergence and dissemination of a swine H3N2 reassortant influenza virus with 2009 pandemic H1N1 genes in pigs in China
    • Fan X, Zhu H, Zhou B, Smith DK, Chen X, Lam TTY, Poon LLM, Peiris M, Guan Y. 2012. Emergence and dissemination of a swine H3N2 reassortant influenza virus with 2009 pandemic H1N1 genes in pigs in China. J Virol 86:2375-2378. https://doi.org/10.1128/JVI.06824-11.
    • (2012) J Virol , vol.86 , pp. 2375-2378
    • Fan, X.1    Zhu, H.2    Zhou, B.3    Smith, D.K.4    Chen, X.5    Lam, T.T.Y.6    Poon, L.L.M.7    Peiris, M.8    Guan, Y.9
  • 29
    • 83555173527 scopus 로고    scopus 로고
    • Isolation of novel triple-reassortant swine H3N2 influenza viruses possessing the hemagglutinin and neuraminidase genes of a seasonal influenza virus in Vietnam in 2010
    • Ngo LT, Hiromoto Y, Pham VP, Le HT, Nguyen T, Le VT, Takemae N, Saito T. 2012. Isolation of novel triple-reassortant swine H3N2 influenza viruses possessing the hemagglutinin and neuraminidase genes of a seasonal influenza virus in Vietnam in 2010. Influenza Other Respir Viruses 6:6-10. https://doi.org/10.1111/j.1750-2659.2011.00267.x.
    • (2012) Influenza Other Respir Viruses , vol.6 , pp. 6-10
    • Ngo, L.T.1    Hiromoto, Y.2    Pham, V.P.3    Le, H.T.4    Nguyen, T.5    Le, V.T.6    Takemae, N.7    Saito, T.8
  • 30
    • 84938592431 scopus 로고    scopus 로고
    • Detection of novel reassortant influenza A (H3N2) and H1N1 2009 pandemic viruses in swine in Hanoi, Vietnam
    • Baudon E, Poon LL, Dao TD, Pham NT, Cowling BJ, Peyre M, Nguyen KV, Peiris M. 2015. Detection of novel reassortant influenza A (H3N2) and H1N1 2009 pandemic viruses in swine in Hanoi, Vietnam. Zoonoses Public Health 62:429-434. https://doi.org/10.1111/zph.12164.
    • (2015) Zoonoses Public Health , vol.62 , pp. 429-434
    • Baudon, E.1    Poon, L.L.2    Dao, T.D.3    Pham, N.T.4    Cowling, B.J.5    Peyre, M.6    Nguyen, K.V.7    Peiris, M.8
  • 31
    • 84926515875 scopus 로고    scopus 로고
    • Molecular epidemiology of influenza A virus infection among hospitalized children in Vietnam during post-pandemic period
    • Tran DN, Pham TMH, Ha MT, Hayakawa S, Mizuguchi M, Ushijima H. 2015 Molecular epidemiology of influenza A virus infection among hospitalized children in Vietnam during post-pandemic period. J Med Virol 87:904-912. https://doi.org/10.1002/jmv.24143.
    • (2015) J Med Virol , vol.87 , pp. 904-912
    • Tran, D.N.1    Pham, T.M.H.2    Ha, M.T.3    Hayakawa, S.4    Mizuguchi, M.5    Ushijima, H.6
  • 32
    • 85008195370 scopus 로고    scopus 로고
    • Epidemiological and clinical characteristics of patients who died from Influenza A(H1N1)pdm09 in Viet Nam
    • Tinh PH, Lan PT, Mahomed P, Nguyen TMN. 2012. Epidemiological and clinical characteristics of patients who died from Influenza A(H1N1)pdm09 in Viet Nam. Western Pac Surveill Response J 3:6-11. https://doi.org/10.5365/wpsar.2011.2.3.003.
    • (2012) Western Pac Surveill Response J , vol.3 , pp. 6-11
    • Tinh, P.H.1    Lan, P.T.2    Mahomed, P.3    Nguyen, T.M.N.4
  • 33
    • 84929591014 scopus 로고    scopus 로고
    • Continual reintroduction of human pandemic H1N1 influenza A viruses into swine in the United States, 2009 to 2014
    • Nelson MI, Stratton J, Killian ML, Janas-Martindale A, Vincent AL. 2015. Continual reintroduction of human pandemic H1N1 influenza A viruses into swine in the United States, 2009 to 2014. J Virol 89:6218-6226. https://doi.org/10.1128/JVI.00459-15.
    • (2015) J Virol , vol.89 , pp. 6218-6226
    • Nelson, M.I.1    Stratton, J.2    Killian, M.L.3    Janas-Martindale, A.4    Vincent, A.L.5
  • 34
    • 80055120822 scopus 로고    scopus 로고
    • The M segment of the 2009 new pandemic H1N1 influenza virus is critical for its high transmission efficiency in the guinea pig model
    • Chou YY, Albrecht RA, Pica N, Lowen AC, Richt JA, García-Sastre A, Palese P, Hai R. 2011. The M segment of the 2009 new pandemic H1N1 influenza virus is critical for its high transmission efficiency in the guinea pig model. J Virol 85:11235-11241. https://doi.org/10.1128/JVI.05794-11.
    • (2011) J Virol , vol.85 , pp. 11235-11241
    • Chou, Y.Y.1    Albrecht, R.A.2    Pica, N.3    Lowen, A.C.4    Richt, J.A.5    García-Sastre, A.6    Palese, P.7    Hai, R.8
  • 35
    • 84895460831 scopus 로고    scopus 로고
    • The M segment of the 2009 pandemic influenza virus confers increased neuraminidase activity, filamentous morphology, and efficient contact transmissibility to A/Puerto Rico/8/1934-based reassortant viruses
    • Campbell PJ, Danzy S, Kyriakis CS, Deymier MJ, Lowen AC, Steel J. 2014. The M segment of the 2009 pandemic influenza virus confers increased neuraminidase activity, filamentous morphology, and efficient contact transmissibility to A/Puerto Rico/8/1934-based reassortant viruses. J Virol 88:3802-3814. https://doi.org/10.1128/JVI.03607-13.
    • (2014) J Virol , vol.88 , pp. 3802-3814
    • Campbell, P.J.1    Danzy, S.2    Kyriakis, C.S.3    Deymier, M.J.4    Lowen, A.C.5    Steel, J.6
  • 36
    • 84862158424 scopus 로고    scopus 로고
    • In vitro reassortment between endemic H1N2 and 2009 H1N1 pandemic swine influenza viruses generates attenuated viruses
    • Hause BM, Collin EA, Ran Z, Zhu L, Webby RJ, Simonson RR, Li F. 2012. In vitro reassortment between endemic H1N2 and 2009 H1N1 pandemic swine influenza viruses generates attenuated viruses. PLoS One 7:e39177. https://doi.org/10.1371/journal.pone.0039177.
    • (2012) PLoS One , vol.7
    • Hause, B.M.1    Collin, E.A.2    Ran, Z.3    Zhu, L.4    Webby, R.J.5    Simonson, R.R.6    Li, F.7
  • 37
    • 84942032612 scopus 로고    scopus 로고
    • Novel reassortant influenza viruses between pandemic (H1N1) 2009 and other influenza viruses pose a risk to public health
    • Kong W, Wang F, Dong B, Ou C, Meng D, Liu J, Fan Z-C. 2015. Novel reassortant influenza viruses between pandemic (H1N1) 2009 and other influenza viruses pose a risk to public health. Microb Pathog 89:62-72. https://doi.org/10.1016/j.micpath.2015.09.002.
    • (2015) Microb Pathog , vol.89 , pp. 62-72
    • Kong, W.1    Wang, F.2    Dong, B.3    Ou, C.4    Meng, D.5    Liu, J.6    Fan, Z.-C.7
  • 39
    • 84945905525 scopus 로고    scopus 로고
    • Novel reassortant human-like H3N2 and H3N1 influenza A viruses detected in pigs are virulent and antigenically distinct from swine viruses endemic to the United States
    • Rajão DS, Gauger PC, Anderson TK, Lewis NS, Abente EJ, Killian ML, Perez DR, Sutton TC, Zhang J, Vincent AL. 2015. Novel reassortant human-like H3N2 and H3N1 influenza A viruses detected in pigs are virulent and antigenically distinct from swine viruses endemic to the United States. J Virol 89:11213-11222. https://doi.org/10.1128/JVI.01675-15.
    • (2015) J Virol , vol.89 , pp. 11213-11222
    • Rajão, D.S.1    Gauger, P.C.2    Anderson, T.K.3    Lewis, N.S.4    Abente, E.J.5    Killian, M.L.6    Perez, D.R.7    Sutton, T.C.8    Zhang, J.9    Vincent, A.L.10
  • 43
    • 84870431038 scopus 로고    scopus 로고
    • CD-HIT: accelerated for clustering the next-generation sequencing data
    • Fu L, Niu B, Zhu Z, Wu S, Li W. 2012. CD-HIT: accelerated for clustering the next-generation sequencing data. Bioinformatics 28:3150-3152. https://doi.org/10.1093/bioinformatics/bts565.
    • (2012) Bioinformatics , vol.28 , pp. 3150-3152
    • Fu, L.1    Niu, B.2    Zhu, Z.3    Wu, S.4    Li, W.5
  • 44
    • 85008169266 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser (Oxf) 41:95-98.
    • (1999) Nucleic Acids Symp Ser (Oxf) , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 45
    • 85007153912 scopus 로고    scopus 로고
    • A simple method to control over-alignment in the MAFFT multiple sequence alignment program
    • Katoh K, Standley DM. 2016. A simple method to control over-alignment in the MAFFT multiple sequence alignment program. Bioinformatics 32:1933-1942. https://doi.org/10.1093/bioinformatics/btw108.
    • (2016) Bioinformatics , vol.32 , pp. 1933-1942
    • Katoh, K.1    Standley, D.M.2
  • 46
    • 84864530626 scopus 로고    scopus 로고
    • Bayesian phylogenetics with BEAUti and the BEAST 1.7
    • Drummond AJ, Suchard MA, Xie D, Rambaut A. 2012. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol Biol Evol 29:1969-1973. https://doi.org/10.1093/molbev/mss075.
    • (2012) Mol Biol Evol , vol.29 , pp. 1969-1973
    • Drummond, A.J.1    Suchard, M.A.2    Xie, D.3    Rambaut, A.4
  • 47
    • 28944450584 scopus 로고    scopus 로고
    • Choosing appropriate substitution models for the phylogenetic analysis of protein-coding sequences
    • Shapiro B, Rambaut A, Drummond AJ. 2006. Choosing appropriate substitution models for the phylogenetic analysis of protein-coding sequences. Mol Biol Evol 23:7-9.
    • (2006) Mol Biol Evol , vol.23 , pp. 7-9
    • Shapiro, B.1    Rambaut, A.2    Drummond, A.J.3


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