Reassortment events among swine influenza a viruses in China: Implications for the origin of the 2009 influenza pandemic

Journal of Virology

Volumn 85, Issue 19, 2011, Pages 10279-10285

  Lam, Tommy Tsan Yuk ^a,b   Zhu, Huachen ^a,b   Wang, Jia ^a   Smith, David K ^a,b   Holmes, Edward C ^c,d   Webster, Robert G ^e   Webby, Richard ^e   Peiris, Joseph M ^b   Guan, Yi ^a,b  

^a SHANTOU UNIVERSITY MEDICAL COLLEGE   (China)

^b THE UNIVERSITY OF HONG KONG   (Hong Kong)

^c PENNSYLVANIA STATE UNIVERSITY   (United States)

^d NATIONAL INSTITUTES OF HEALTH   (United States)

^e ST JUDE CHILDREN S RESEARCH HOSPITAL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

2009 H1N1 INFLUENZA; ANIMAL CELL; ARTICLE; CHINA; CONTROLLED STUDY; EMBRYO; GENETIC REASSORTMENT; GENETIC VARIABILITY; GENOTYPE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SWINE INFLUENZA; SWINE INFLUENZA VIRUS; VIRUS GENOME; VIRUS IDENTIFICATION;

ANIMALS; CHINA; CLUSTER ANALYSIS; GENOTYPE; INFLUENZA A VIRUS; MOLECULAR SEQUENCE DATA; ORTHOMYXOVIRIDAE INFECTIONS; REASSORTANT VIRUSES; RECOMBINATION, GENETIC; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; SWINE; SWINE DISEASES;

AVES; INFLUENZA A VIRUS; SUIDAE; SWINE INFLUENZA VIRUS;

EID: 80053947748     PISSN: 0022538X     EISSN: 10985514     Source Type: Journal    
DOI: 10.1128/JVI.05262-11     Document Type: Article

References (27)

1. Bao, Y., et al. 2008. The influenza virus resource at the National Center for Biotechnology Information. J. Virol. 82:596-601.
2. Brown, I. H. 2000. The epidemiology and evolution of influenza viruses in pigs. Vet. Microbiol. 74:29-46.
3. Drummond, A. J., S. Y. Ho, M. J. Phillips, and A. Rambaut. 2006. Relaxed phylogenetics and dating with confidence. PLoS Biol. 4:e88.
4. Drummond, A. J., and A. Rambaut. 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 7:214.
5. Edgar, R. C. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32:1792-1797.
6. Garten, R. J., et al. 2009. Antigenic and genetic characteristics of swineorigin 2009 A(H1N1) influenza viruses circulating in humans. Science 325: 197-201.
7. Gibbs, A. J., J. S. Armstrong, and J. C. Downie. 2009. From where did the 2009 'swine-origin' influenza A virus (H1N1) emerge? Virol. J. 6:207.
8. Guindon, S., and O. Gascuel. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52:696-704.
9. Kawaoka, Y., S. Krauss, and R. G. Webster. 1989. Avian-to-human transmission of the PB1 gene of influenza A viruses in the 1957 and 1968 pandemics. J. Virol. 63:4603-4608.
10. Lam, T. Y., et al. 2008. Evolutionary analyses of European H1N2 swine influenza A virus by placing timestamps on the multiple reassortment events. Virus Res. 131:271-278.
11. Olsen, C. W. 2002. The emergence of novel swine influenza viruses in North America. Virus Res. 85:199-210.
12. Parrish, C. R., and Y. Kawaoka. 2005. The origins of new pandemic viruses: the acquisition of new host ranges by canine parvovirus and influenza A viruses. Annu. Rev. Microbiol. 59:553-586.
13. Peiris, J. S., et al. 2001. Cocirculation of avian H9N2 and contemporary "human" H3N2 influenza A viruses in pigs in southeastern China: potential for genetic reassortment? J. Virol. 75:9679-9686.
14. Poon, L. L., et al. 2010. Rapid detection of reassortment of pandemic H1N1/ 2009 influenza virus. Clin. Chem. 56:1340-1344.
15. Rambaut, A., and A. J. Drummond. 2009, posting date. Tracer v1.5. http://tree.bio.ed.ac.uk/software/tracer.
16. Ronquist, F., and J. P. Huelsenbeck. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574.
17. Scholtissek, C., V. S. Hinshaw, and C. W. Olsen. 1998. Influenza in pigs and their role as the intermediate host, p. 137-145. In K. G. Nicholson, R. G. Webster, and A. J. Hay (ed.), Textbook of influenza. Blackwell Science, Oxford, United Kingdom.
18. Shapiro, B., A. Rambaut, and A. J. Drummond. 2006. Choosing appropriate substitution models for the phylogenetic analysis of protein-coding sequences. Mol. Biol. Evol. 23:7-9.
19. Smith, G. J., et al. 2009. Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic. Nature 459:1122-1125.
20. Tamura, K., J. Dudley, M. Nei, and S. Kumar. 2007. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24:1596-1599.
21. Vijaykrishna, D., et al. 2010. Reassortment of pandemic H1N1/2009 influenza A virus in swine. Science 328:1529.
22. Vijaykrishna, D., et al. 2011. Long-term evolution and transmission dynamics of swine influenza A viruses. Nature 473:519-522.
23. Xu, M., et al. 2011. Isolation and genetic analysis of a novel triple-reassortant H1N1 influenza virus from a pig in China. Vet. Microbiol. 147:403-409.
24. Yu, H., et al. 2008. Genetic evolution of swine influenza A (H3N2) viruses in China from 1970 to 2006. J. Clin. Microbiol. 46:1067-1075.
25. Yu, H., et al. 2009. Isolation and genetic characterization of avian-like H1N1 and novel ressortant H1N2 influenza viruses from pigs in China. Biochem. Biophys. Res. Commun. 386:278-283.
26. Zhou, N. N., et al. 1999. Genetic reassortment of avian, swine, and human influenza A viruses in American pigs. J. Virol. 73:8851-8856.
27. Zhu, H., et al. Novel reassortment of Eurasian avian-like and pandemic/2009 influenza viruses in swine: infectious potential for humans. J. Virol., in press.