Reassortant swine influenza viruses isolated in Japan contain genes from pandemic A(H1N1) 2009

Microbiology and Immunology

Volumn 58, Issue 6, 2014, Pages 327-341

  Kanehira, Katsushi ^a   Takemae, Nobuhiro ^a   Uchida, Yuko ^a   Hikono, Hirokazu ^a   Saito, Takehiko ^a  

^a NATIONAL INSTITUTE OF ANIMAL HEALTH   (Japan)

Author keywords

Pandemic A(H1N1) 2009; Reassortant influenza virus; Swine influenza virus

Indexed keywords

VIRUS HEMAGGLUTININ; VIRUS NUCLEOPROTEIN; VIRUS SIALIDASE; VIRUS ANTIBODY; VIRUS PROTEIN; VIRUS RNA;

AMINO ACID SEQUENCE; ANIMAL CELL; ARTICLE; GENE SEQUENCE; GENETIC LINE; GENETIC REASSORTMENT; GENOME ANALYSIS; GLYCOSYLATION; HEMAGGLUTININ GENE; INFLUENZA VIRUS A H1N1; JAPAN; MOLECULAR PHYLOGENY; NEURAMINIDASE GENE; NONHUMAN; NUCLEOPROTEIN GENE; PHYLOGENETIC TREE; VIRUS GENE; VIRUS ISOLATION; VIRUS STRAIN; ANIMAL; CLUSTER ANALYSIS; DNA SEQUENCE; GENETIC RECOMBINATION; GENETICS; HUMAN; IMMUNOLOGY; INFLUENZA VIRUS A H1N2; INFLUENZA VIRUS A H3N2; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; ORTHOMYXOVIRUS; ORTHOMYXOVIRUS INFECTION; PHYLOGENY; SWINE; SWINE DISEASE; VETERINARY; VIROLOGY;

ANIMALS; ANTIBODIES, VIRAL; CLUSTER ANALYSIS; HUMANS; INFLUENZA A VIRUS, H1N1 SUBTYPE; INFLUENZA A VIRUS, H1N2 SUBTYPE; INFLUENZA A VIRUS, H3N2 SUBTYPE; JAPAN; MOLECULAR SEQUENCE DATA; ORTHOMYXOVIRIDAE; ORTHOMYXOVIRIDAE INFECTIONS; PHYLOGENY; REASSORTANT VIRUSES; RECOMBINATION, GENETIC; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; SWINE; SWINE DISEASES; VIRAL PROTEINS;

EID: 84901985941     PISSN: 03855600     EISSN: 13480421     Source Type: Journal    
DOI: 10.1111/1348-0421.12152     Document Type: Article

References (40)

1. Reeth V., Brown I., Olsen C. ( 2012) Influenza virus. In: Zimmerman J., Karriker L., Ramirez A., Schwartz K., Stevenson G. eds. Diseases of Swine. 10th edn. Chichester: Wiley, pp. 557-71.
2. Thacker E.L., Thacker B.J., Janke B.H. ( 2001) Interaction between Mycoplasma hyopneumoniae and swine influenza virus. J Clin Microbiol 39: 2525-30.
3. Bennett R., Ijpelaar J. ( 2005) Updated estimates of the costs associated with thirty four endemic livestock diseases in Great Britain: a note. J Agr Econ 56: 135-44.
4. Ito T., Couceiro J.N., Kelm S., Baum L.G., Krauss S., Castrucci M.R., Donatelli I., Kida H., Paulson J.C., Webster R.G., Kawaoka Y. ( 1998) Molecular basis for the generation in pigs of influenza A viruses with pandemic potential. J Virol 72: 7367-73.
5. Webster R.G., Bean W.J., Gorman O.T., Chambers T.M., Kawaoka Y. ( 1992) Evolution and ecology of influenza A viruses. Microbiol Rev 56: 152-79.
6. Brown I.H., Ludwig S., Olsen C.W., Hannoun C., Scholtissek C., Hinshaw V.S., Harris P.A., Mccauley J.W., Strong I., Alexander D.J. ( 1997) Antigenic and genetic analyses of H1N1 influenza A viruses from European pigs. J Gen Virol 78(Pt 3): 553-62.
7. Brown I.H., Harris P.A., Mccauley J.W., Alexander D.J. ( 1998) Multiple genetic reassortment of avian and human influenza A viruses in European pigs, resulting in the emergence of an H1N2 virus of novel genotype. J Gen Virol 79 79(Pt 12): 2947-55.
8. Zhou N.N., Senne D.A., Landgraf J.S., Swenson S.L., Erickson G., Rossow K., Liu L., Yoon K., Krauss S., Webster R.G. ( 1999) Genetic reassortment of avian, swine, and human influenza A viruses in American pigs. J Virol 73: 8851-6.
9. Karasin A.I., Schutten M.M., Cooper L.A., Smith C.B., Subbarao K., Anderson G.A., Carman S., Olsen C.W. ( 2000) Genetic characterization of H3N2 influenza viruses isolated from pigs in North America, 1977-1999: evidence for wholly human and reassortant virus genotypes. Virus Res 68: 71-85.
10. Schnitzler S.U., Schnitzler P. ( 2009) An update on swine-origin influenza virus A/H1N1: a review. Virus Genes 39: 279-92.
11. Forgie S.E., Keenliside J., Wilkinson C., Webby R., Lu P., Sorensen O., Fonseca K., Barman S., Rubrum A., Stigger E., Marrie T.J., Marshall F., Spady D.W., Hu J., Loeb M., Russell M.L., Babiuk L.A. ( 2011) Swine outbreak of pandemic influenza A virus on a Canadian research farm supports human-to-swine transmission. Clin Infect Dis 52: 10-8.
12. Howden K.J., Brockhoff E.J., Caya F.D., Mcleod L.J., Lavoie M., Ing J.D., Bystrom J.M., Alexandersen S., Pasick J.M., Berhane Y., Morrison M.E., Keenliside J.M., Laurendeau S., Rohonczy E.B. ( 2009) An investigation into human pandemic influenza virus (H1N1) 2009 on an Alberta swine farm. Can Vet J 50: 1153-61.
13. Fan X., Zhu H., Zhou B., Smith D.K., Chen X., Lam T.T., Poon L.L., Peiris M., Guan Y. ( 2012) Emergence and dissemination of a swine H3N2 reassortant influenza virus with 2009 pandemic H1N1 genes in pigs in China. J Virol 86: 2375-8.
14. Ducatez M.F., Hause B., Stigger-Rosser E., Darnell D., Corzo C., Juleen K., Simonson R., Brockwell-Staats C., Rubrum A., Wang D., Webb A., Crumpton J.C., Lowe J., Gramer M., Webby R.J. ( 2011) Multiple reassortment between pandemic (H1N1) 2009 and endemic influenza viruses in pigs, United States. Emerg Infect Dis 17: 1624-9.
15. Howard W.A., Essen S.C., Strugnell B.W., Russell C., Barass L., Reid S.M., Brown I.H. ( 2011) Reassortant pandemic (H1N1) 2009 virus in pigs, United Kingdom. Emerg Infect Dis 17: 1049-52.
16. Kitikoon P., Sreta D., Na Ayudhya S.N., Wongphatcharachai M., Lapkuntod J., Prakairungnamthip D., Bunpapong N., Suradhat S., Thanawongnuwech R., Amonsin A. ( 2011) Brief report: Molecular characterization of a novel reassorted pandemic H1N1 2009 in Thai pigs. Virus Genes 43: 1-5.
17. Moreno A., Di Trani L., Faccini S., Vaccari G., Nigrelli D., Boniotti M.B., Falcone E., Boni A., Chiapponi C., Sozzi E., Cordioli P. ( 2011) Novel H1N2 swine influenza reassortant strain in pigs derived from the pandemic H1N1/2009 virus. Vet Microbiol 149: 472-7.
18. Starick E., Lange E., Fereidouni S., Bunzenthal C., Höveler R., Kuczka A., Grosse Beilage E., Hamann H.P., Klingelhöfer I., Steinhauer D., Vahlenkamp T., Beer M., Harder T. ( 2011) Reassorted pandemic (H1N1) 2009 influenza A virus discovered from pigs in Germany. J Gen Virol 92: 1184-8.
19. Vijaykrishna D., Poon L.L., Zhu H.C., Ma S.K., Li O.T., Cheung C.L., Smith G.J., Peiris J.S., Guan Y. ( 2010) Reassortment of pandemic H1N1/2009 influenza A virus in swine. Science 328: 1529.
20. Zhu H., Zhou B., Fan X., Lam T.T., Wang J., Chen A., Chen X., Chen H., Webster R.G., Webby R., Peiris J.S., Smith D.K., Guan Y. ( 2011) Novel reassortment of Eurasian avian-like and pandemic/2009 influenza viruses in swine: Infectious potential for humans. J Virol 85: 10432-9.
21. Starick E., Lange E., Grund C., Grosse Beilage E., Döhring S., Maas A., Noé T., Beer M., Harder T.C. ( 2012) Reassortants of pandemic influenza A virus H1N1/2009 and endemic porcine HxN2 viruses emerge in swine populations in Germany. J Gen Virol 93: 1658-63.
22. Pereda A., Rimondi A., Cappuccio J., Sanguinetti R., Angel M., Ye J., Sutton T., Dibárbora M., Olivera V., Craig M.I., Quiroga M., Machuca M., Ferrero A., Perfumo C., Perez D.R. ( 2011) Evidence of reassortment of pandemic H1N1 influenza virus in swine in Argentina: are we facing the expansion of potential epicenters of influenza emergence? Influenza Other Respir Viruses 5: 409-12.
23. Han J.Y., Park S.J., Kim H.K., Rho S., Nguyen G.V., Song D., Kang B.K., Moon H.J., Yeom M.J., Park B.K. ( 2012) Identification of reassortant pandemic H1N1 influenza virus in Korean pigs. J Microbiol Biotechnol 22: 699-707.
24. Ali A., Khatri M., Wang L., Saif Y.M., Lee C.W. ( 2012) Identification of swine H1N2/pandemic H1N1 reassortant influenza virus in pigs, United States. Vet Microbiol 158: 60-8.
25. Liu Q., Ma J., Liu H., Qi W., Anderson J., Henry S.C., Hesse R.A., Richt J.A., Ma W. ( 2012) Emergence of novel reassortant H3N2 swine influenza viruses with the 2009 pandemic H1N1 genes in the United States. Arch Virol 157: 555-62.
26. Tremblay D., Allard V., Doyon J.F., Bellehumeur C., Spearman J.G., Harel J., Gagnon C.A. ( 2011) Emergence of a new swine H3N2 and pandemic (H1N1) 2009 influenza A virus reassortant in two Canadian animal populations, mink and swine. J Clin Microbiol 49: 4386-90.
27. Hiromoto Y., Parchariyanon S., Ketusing N., Netrabukkana P., Hayashi T., Kobayashi T., Takemae N., Saito T. ( 2012) Isolation of the pandemic (H1N1) 2009 virus and its reassortant with an H3N2 swine influenza virus from healthy weaning pigs in Thailand in 2011. Virus Res 169: 175-81.
28. Sugimura T., Yonemochi H., Ogawa T., Tanaka Y., Kumagai T. ( 1980) Isolation of a recombinant influenza virus (Hsw 1 N2) from swine in Japan. Arch Virol 66: 271-4.
29. Nerome K., Sakamoto S., Yano N., Yamamoto T., Kobayashi S., Webster R.G., Oya A. ( 1983) Antigenic characteristics and genome composition of a naturally occurring recombinant influenza virus isolated from a pig in Japan. J Gen Virol 64(Pt 12): 2611-20.
30. Saito T., Suzuki H., Maeda K., Inai K., Takemae N., Uchida Y., Tsunemitsu H. ( 2008) Molecular characterization of an H1N2 swine influenza virus isolated in Miyazaki, Japan, in 2006. J Vet Med Sci 70: 423-7.
31. Saito T., Takemae N., Uchida Y., Hiromoto Y., Hayashi T. ( 2010) Evolutional analysis of swine influenza virus in Japan. In: Proceedings of the XIV International Conference on Negative Strand Viruses, 21-25 June 2010, Brugge, Belgium, p. 228.
32. Matsuu A., Uchida Y., Takemae N., Mawatari T., Yoneyama S.K., Kasai T., Nakamura R., Eto M., Saito T. ( 2012) ) Genetic characterization of swine influenza viruses isolated in Japan between 2009 and 2012. Microbiol Immunol 56: 792-803.
33. Kobayashi M., Takayama I., Kageyama T., Tsukagoshi H., Saitoh M., Ishioka T., Yokota Y., Kimura H., Tashiro M., Kozawa K. ( 2013) Novel reassortant influenza A(H1N2) virus derived from A(H1N1)pdm09 virus isolated from swine, Japan, 2012. Emerg Infect Dis 19: 1972-4.
34. Hall T.A. ( 1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41: 95-8.
35. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. ( 2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-9.
36. Ito T., Kawaoka Y., Vines A., Ishikawa H., Asai T., Kida H. ( 1998) Continued circulation of reassortant H1N2 influenza viruses in pigs in Japan. Arch Virol 143: 1773-82.
37. Romagosa A., Allerson M., Gramer M., Joo H.S., Deen J., Detmer S., Torremorell M. ( 2011) Vaccination of influenza a virus decreases transmission rates in pigs. Vet Res 42: 120.
38. Brookes S.M., Nunez A., Choudhury B., Matrosovich M., Essen S.C., Clifford D., Slomka M.J., Kuntz-Simon G., Garcon F., Nash B., Hanna A., Heegaard P.M., Queguiner S., Chiapponi C., Bublot M., Garcia J.M., Gardner R., Foni E., Loeffen W., Larsen L., Van Reeth K., Banks J., Irvine R.M., Brown I.H. ( 2010) Replication, pathogenesis and transmission of pandemic (H1N1) 2009 virus in non-immune pigs. PLoS One 5: e9068.
39. Lange E., Kalthoff D., Blohm U., Teifke J.P., Breithaupt A., Maresch C., Starick E., Fereidouni S., Hoffmann B., Mettenleiter T.C., Beer M., Vahlenkamp T.W. ( 2009) Pathogenesis and transmission of the novel swine-origin influenza virus A/H1N1 after experimental infection of pigs. J Gen Virol 90: 2119-23.
40. World Health Organization (2011) Influenza virus activity in the world. [Cited 2 December 2011] Available from URL: http://www.who.int/influenza/gisrs_laboratory/updates/summaryreport_20111202/en/.